BAC Information

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BAC

Clone NameB6Ng01-124N01
Chromosome7 (Build37)1 (Build37)
Map Location 36,259,981 - 36,261,129148,747,871 - 148,748,124
singlet/doubletsingletsinglet
Overlap gene2410004F06Rik
Upstream geneLOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9
Downstream geneNudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124N01.bB6Ng01-124N01.g
ACCDH927622DH927623
length1,139287
definitionDH927622|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N01, 5' end.DH927623|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,259,981 - 36,261,129)(148,747,871 - 148,748,124)
sequence
gaattcctacagcagactgcatgggaaacacctttacacgcttctgcaaa
atgtgatttgccgccattttcagggatcccagaatggatttgaccaaagg
ccatcatcctagccagtatttaattaaagtttacttcaaatttatagtag
tgtttttttttattctccaacagtgggattaacacttctcagagtgactt
cactatatatggttgtttttaagattgctcaatttctaaccctaagagct
gcccctggggtcatgagagcaggagagctggccctgctccttgccagctc
tggctctctagagcatgggctccacaccttgcccgggcagcagtggagct
ggccccagggtccccagagaggggaaagatggccctgcccttccacagct
gcagccctgggtaagctggctgcagcggtgctggagagctcaccctggag
gtgtggctgtgggtctgtggaagcctccttcccagcggcacacaagatga
gcctgaggacatgttcagagggacactgagagtgcatccttagatcagca
gctccacacacagtacacaccaatcctatgctcagtgtgtgataatgtag
ccaggaatcgggcagaaaagcgcacgtgttttccactcaaatgagtgcac
agccagggagccccatctgtgttcttcccctggtgtcctcagtgtactgt
actttgagtatacccgagtgtactatcaaactgcacactgtgttgtctgc
aaataagatgtcaacaaagtcctttctgtagaagaaacaatgaaaacagt
gtgcccgagacttgcttttatcactccagcaacactagaggggtaagctg
tgtgtaggacaacaaggcgccctgaaccctgaaagctcttaaagctgagg
gttagaacatggagactccttaaacttaaccctgtgttatgttttccaaa
gggagacagaatgcacttacgagtcttggcacggaaggtcctcaaaggcc
tggcagtttagcttctttgtatagtttcttcagttgttctagttgttctg
aatatcatacccattcccatggataaatttcagctcgacattatatcatg
atagaagttttaatttgcaggtttgaccatgtaccttca
ttttcttgcttgctttatctttctttctttttaaaaatatttaattctct
ctctctctctctctctctctctctctctctctctctctctctctgtgtgt
atgtgtgtgtatatgtctatgtcactctctgtaacgcgaggcacacacga
gagcgcgcctccgattgttatttaaaaaagaaaaagagtgagtgctcccc
gccactccctcttattctgtttgatagacatatgtatgtgtgtgagtaaa
attgattatgtaaatatttttttgttttgttttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_36259981_36261129
seq2: B6Ng01-124N01.b_48_1186

seq1  GAATTCCTACAGCAGACTGCATGGGAAACACCTTTACACGCTTCTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGCAGACTGCATGGGAAACACCTTTACACGCTTCTGCAAA  50

seq1  ATGTGATTTGCCGCCATTTTCAGGGATCCCAGAATGGATTTGACCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTGCCGCCATTTTCAGGGATCCCAGAATGGATTTGACCAAAGG  100

seq1  CCATCATCCTAGCCAGTATTTAATTAAAGTTTACTTCAAATTTATAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCCTAGCCAGTATTTAATTAAAGTTTACTTCAAATTTATAGTAG  150

seq1  TGTTTTTTTTTATTCTCCAACAGTGGGATTAACACTTCTCAGAGTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTATTCTCCAACAGTGGGATTAACACTTCTCAGAGTGACTT  200

seq1  CACTATATATGGTTGTTTTTAAGATTGCTCAATTTCTAACCCTAAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATATGGTTGTTTTTAAGATTGCTCAATTTCTAACCCTAAGAGCT  250

seq1  GCCCCTGGGGTCATGAGAGCAGGAGAGCTGGCCCTGCTCCTTGCCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGGTCATGAGAGCAGGAGAGCTGGCCCTGCTCCTTGCCAGCTC  300

seq1  TGGCTCTCTAGAGCATGGGCTCCACACCTTGCCCGGGCAGCAGTGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTAGAGCATGGGCTCCACACCTTGCCCGGGCAGCAGTGGAGCT  350

seq1  GGCCCCAGGGTCCCCAGAGAGGGGAAAGATGGCCCTGCCCTTCCACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGGGTCCCCAGAGAGGGGAAAGATGGCCCTGCCCTTCCACAGCT  400

seq1  GCAGCCCTGGGTAAGCTGGCTGCAGCGGTGCTGGAGAGCTCACCCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGGGTAAGCTGGCTGCAGCGGTGCTGGAGAGCTCACCCTGGAG  450

seq1  GTGTGGCTGTGGGTCTGTGGAAGCCTCCTTCCCAGCGGCACACAAGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGTGGGTCTGTGGAAGCCTCCTTCCCAGCGGCACACAAGATGA  500

seq1  GCCTGAGGACATGTTCAGAGGGACACTGAGAGTGCATCCTTAGATCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGACATGTTCAGAGGGACACTGAGAGTGCATCCTTAGATCAGCA  550

seq1  GCTCCACACACAGTACACACCAATCCTATGCTCAGTGTGTGATAATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACACACAGTACACACCAATCCTATGCTCAGTGTGTGATAATGTAG  600

seq1  CCAGGAATCGGGCAGAAAAGCGCACGTGTTTTCCACTCAAATGAGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATCGGGCAGAAAAGCGCACGTGTTTTCCACTCAAATGAGTGCAC  650

seq1  AGCCAGGGAGCCCCATCTGTGTTCTTCCCCTGGTGTCCTCAGTGTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAGCCCCATCTGTGTTCTTCCCCTGGTGTCCTCAGTGTACTGT  700

seq1  ACTTTGAGTATACCCGAGTGTACTATCAAACTGCACACTGTGTTGTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTATACCCGAGTGTACTATCAAACTGCACACTGTGTTGTCTGC  750

seq1  AAATAAGATGTCAACAAAGTCCTTTCTGTAGAAGAAACAATGAAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATGTCAACAAAGTCCTTTCTGTAGAAGAAACAATGAAAACAGT  800

seq1  GTGCCCGAGACTTGCTTTTATCACTCCAGCAACACTAGAGGGGTAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGAGACTTGCTTTTATCACTCCAGCAACACTAGAGGGGTAAGCTG  850

seq1  TGTGTAGGACAACAAGGCGCCCTGAACCCTGAAAGCTCTTAAAGCTGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGACAACAAGGCGCCCTGAACCCTGAAAGCTCTTAAAGCTGAGG  900

seq1  GTTAGAACATGGAGACTCCTTAAACTTAACCCTGTGTTATGTTTTCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACATGGAGACTCCTTAAACTTAACCCTGTGTTATGTTTTCCAAA  950

seq1  GGGAGACAGAAATGCACTTACGAGGTCTGGCACGGAAGGTCCTCAAAGG-  999
      ||||||||| ||||||||||||||   |||||||||||||||||||||| 
seq2  GGGAGACAG-AATGCACTTACGAGTCTTGGCACGGAAGGTCCTCAAAGGC  999

seq1  CTGGCAGTTTAGCTTCTTTGTATAGTTTCTTCAGTTGTTCTAGGTGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGCAGTTTAGCTTCTTTGTATAGTTTCTTCAGTTGTTCTAGTTGTTCT  1049

seq1  GAATTATCAATACCCATTCCCATGGATAAAATTTCAGCTCGAACATTATA  1099
      ||| |||| |||||||||||||||||| ||||||||||||| ||||||| 
seq2  GAA-TATC-ATACCCATTCCCATGGAT-AAATTTCAGCTCG-ACATTAT-  1094

seq1  ATCAATGATAGAAGTTTTTAGATTTGAAAGTTTTGTAACATGTACCTTCA  1149
      ||| ||||||||||||||   ||||| | ||||   | ||||||||||||
seq2  ATC-ATGATAGAAGTTTT--AATTTGCAGGTTT--GACCATGTACCTTCA  1139

seq1: chr1_148747871_148748124
seq2: B6Ng01-124N01.g_121_362

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTATCTCTCTCTCTG  50
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  50

seq1  TGTGTATGTGTGTGTATGAGTGTGCATGTATAATTGATCATCTTTATATT  100
      |||||||||||||||||        |||| ||  || ||| || |     
seq2  TGTGTATGTGTGTGTAT--------ATGTCTA--TG-TCA-CTCT-----  83

seq1  ATTACTGTATGTAGATCTGGCAATACATG-CAGGGAGTAGTAAGCTGGTA  149
          |||||    ||   ||| | ||| |  || | |        || ||
seq2  ----CTGTAACGCGA---GGC-ACACACGAGAGCGCGCCTCCGATTGTTA  125

seq1  TTTACTTTTG-------GTCAGTAGACACATGTACACACACACAAACACA  192
      ||||     |       || |||   | |    || | | |  |  |   
seq2  TTTAAAAAAGAAAAAGAGTGAGTGCTCCCCGCCACTCCCTCTTATTCTGT  175

seq1  CACATACACAAACACA--------AACACACAGGATCTAAGTATTCATAT  234
         ||| ||| |   |        |  | |   ||| || |||   ||||
seq2  TTGATAGACATATGTATGTGTGTGAGTAAAATTGAT-TATGTA--AATAT  222

seq1  AGATTTGTTTTGTTTTATAT  254
         ||||||||||||||| |
seq2  TTTTTTGTTTTGTTTTATGT  242