BAC Information

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BAC

Clone NameB6Ng01-125I19
Chromosome1 (Build37)
Map Location 178,111,521 - 178,268,498
singlet/doubletdoublet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I19.bB6Ng01-125I19.g
ACCDH928156DH928157
length1,1781,048
definitionDH928156|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I19, 5' end.DH928157|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,111,521 - 178,112,716)(178,267,430 - 178,268,498)
sequence
gaattccatatgtcagttaacagagactatgcaaatgtagtacttctata
agagggctggatgtgagcaggatctggaaatactgtgtctataatcagta
cttggaaaggataagaatccaacacatttgactaatgacatgaactttaa
aatccagcaaaataaatataattatcctttaggaaatgattactgcagag
acctactgctaagaagttcaacatttggcttccaagttcgtgcttgaaaa
atgttattgtacctccagtgctgacttgcattattacatcacatggatgg
gtaccacaaagcatttcttgagttactgacactagcctgtatatttatct
aatgtaacttacacctttaacaaattaatttttgagccagggccttacta
tagagtctcagctgccctgtgaatccccatgtagaccaggctggcctact
actcacagagatctgcctgactcttgggtactggtataaaggtgtgcacc
tttgacagtttggtgctgaggctggagaaatgccagcactccccatcata
catctgacagcatgctatacccaaatgggacagaaagaaaaattaaacac
tcttctggaaaaactccaccccattcctggaatgccctgcatgttcccca
tcttaactaaaaactaatcctttgtttgaaaaatttcaggaaatggttct
ttctttcaaagcccacacccaactcttgagtgtttatctaagactttcac
caactttctcccaatccctttttttctcttctgggaattctttctctttt
agacataagaactaggaaacacttggcagagggctgaacctggtttacct
gtggaggttcactgggtaagacccagttggttagcagaagaatgggcaat
ctaacgatttctattctaaagactctgagggcagacacaggatgttgctg
tctctgtttaggggcaaacagaaaaaaatgttaagtaggacatcccacta
gaagttgtaaaaagttattaaaatttgaatatggtttgaaaacatctgta
tttatagacaggacctaaagtccaagagcaagatcagagtctactggagc
tcctgaagttttgacctacaactgaagaagagtttcactgagtgaaaaaa
tgcagtttaactctattgcagtaaagca
gaattcttaggtttgtagctggaaaaggaaagattgcctaagcaggtgtt
aatttgcttactttttatttttacattgtttgtttattgtgtgtatacat
gtgtgacacaagtgtgccagagcacacgtgtgaatgtatggaggtcagag
gacaattactggaagtcagttctctcctgtcatgtgacctctggagatag
aatccaggtggtcagggttgggagcaggcttttctttcctctgggaattt
ctgctttacatctgataagaggcaccaactcatcagtgaaagatgatcag
tgactcagaagtgaaagactcattttcctttcatgaccccataacttgct
gtctttctgttctgcctcgccttaatttggaaaaacaaaagtcttcctaa
ttgaactgtgacttagttccagacatggttggaacatttatcattttctt
ggcttaaaaaaaaaaaatcatgattctacacttgctcagtgccacatgca
attgtcaggttgtttccaggaagcaaactcaaatttatgtaatgtctggc
tcaggttttttctactccagccataattataactgattgattcgttttta
cttctctatagacttgaaccgtttgtagcatctcagaaggttggtggcct
ggattgtgtgtgtgcaaagtctctctgaagctgtaaaaagaaagtacacc
agtaaatattatcactgcttccagtaaagtctgggaggatttctctgtga
aattttaaatggaaatcggtattacctgagagtagcagccccagtctggg
caaacccagacataattcattactacagatgtttcaattatcccagattt
taaattatttttccttttctcttgtttggttttagagccattcaatattt
atgatgatgaggtgatgtgcataaatattagataatgttcttttgtctac
gatctccaatagtaggatgatttgaaactagagaagctttgccaccaaat
tctactaaggaaaattctggattagacaagaacgaaagacagataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178111521_178112716
seq2: B6Ng01-125I19.b_46_1223

seq1  GAATTCCATATGTCAGTTAACAGAGACTATGCAAATGTAGTACTTCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTCAGTTAACAGAGACTATGCAAATGTAGTACTTCTATA  50

seq1  AGAGGGCTGGATGTGAGCAGGATCTGGAAATACTGTGTCTATAATCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGGATGTGAGCAGGATCTGGAAATACTGTGTCTATAATCAGTA  100

seq1  CTTGGAAAGGATAAGAATCCAACACATTTGACTAATGACATGAACTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGGATAAGAATCCAACACATTTGACTAATGACATGAACTTTAA  150

seq1  AATCCAGCAAAATAAATATAATTATCCTTTAGGAAATGATTACTGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAAAATAAATATAATTATCCTTTAGGAAATGATTACTGCAGAG  200

seq1  ACCTACTGCTAAGAAGTTCAACATTTGGCTTCCAAGTTCGTGCTTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGCTAAGAAGTTCAACATTTGGCTTCCAAGTTCGTGCTTGAAAA  250

seq1  ATGTTATTGTACCTCCAGTGCTGACTTGCATTATTACATCACATGGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGTACCTCCAGTGCTGACTTGCATTATTACATCACATGGATGG  300

seq1  GTACCACAAAGCATTTCTTGAGTTACTGACACTAGCCTGTATATTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACAAAGCATTTCTTGAGTTACTGACACTAGCCTGTATATTTATCT  350

seq1  AATGTAACTTACACCTTTAACAAATTAATTTTTGAGCCAGGGCCTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACTTACACCTTTAACAAATTAATTTTTGAGCCAGGGCCTTACTA  400

seq1  TAGAGTCTCAGCTGCCCTGTGAATCCCCATGTAGACCAGGCTGGCCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTCAGCTGCCCTGTGAATCCCCATGTAGACCAGGCTGGCCTACT  450

seq1  ACTCACAGAGATCTGCCTGACTCTTGGGTACTGGTATAAAGGTGTGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGATCTGCCTGACTCTTGGGTACTGGTATAAAGGTGTGCACC  500

seq1  TTTGACAGTTTGGTGCTGAGGCTGGAGAAATGCCAGCACTCCCCATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGTTTGGTGCTGAGGCTGGAGAAATGCCAGCACTCCCCATCATA  550

seq1  CATCTGACAGCATGCTATACCCAAATGGGACAGAAAGAAAAATTAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACAGCATGCTATACCCAAATGGGACAGAAAGAAAAATTAAACAC  600

seq1  TCTTCTGGAAAAACTCCACCCCATTCCTGGAATGCCCTGCATGTTCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAAAAACTCCACCCCATTCCTGGAATGCCCTGCATGTTCCCCA  650

seq1  TCTTAACTAAAAACTAATCCTTTGTTTGAAAAATTTCAGGAAATGGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTAAAAACTAATCCTTTGTTTGAAAAATTTCAGGAAATGGTTCT  700

seq1  TTCTTTCAAAGCCCACACCCAACTCTTGAGTGTTTATCTAAGACTTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAAAGCCCACACCCAACTCTTGAGTGTTTATCTAAGACTTTCAC  750

seq1  CAACTTTCTCCCAATCCCTTTTTTTCTCTTCTGGGAATTCTTTCTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTCCCAATCCCTTTTTTTCTCTTCTGGGAATTCTTTCTCTTTT  800

seq1  AGACATAAGAACTAGGAAACACTTGGCAGAGGGCTGAACCTGGTTTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGAACTAGGAAACACTTGGCAGAGGGCTGAACCTGGTTTACCT  850

seq1  GTGGAGGTTCACTGGGTAAAGACCCAGTTGGTTAGCAGAAGAATGGGCAA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGGAGGTTCACTGGGT-AAGACCCAGTTGGTTAGCAGAAGAATGGGCAA  899

seq1  TCTAACGATTTCTATTCTAAAGACTCTGAGGGCAGACACAGGATGTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGATTTCTATTCTAAAGACTCTGAGGGCAGACACAGGATGTTGCT  949

seq1  GTCTCTGTTTAGGGGGCAAACAGAAAAAAAATGTTAAGGTAGGACATCCC  1000
      ||||||||||| ||||||||||| ||||||||||||| ||||||||||||
seq2  GTCTCTGTTTA-GGGGCAAACAG-AAAAAAATGTTAA-GTAGGACATCCC  996

seq1  ACTAGAAGTTGTAAAAAAGTTATTAAAATTTGAATATGGTTTGAAAACAT  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTTGT-AAAAAGTTATTAAAATTTGAATATGGTTTGAAAACAT  1045

seq1  CTGTATTTATAGACAAGGACCTAAAGTCCAAGAGCAGAGATCAGAGTCAA  1100
      |||||||||||||| ||||||||||||||||||||| ||||||||||| |
seq2  CTGTATTTATAGAC-AGGACCTAAAGTCCAAGAGCA-AGATCAGAGTCTA  1093

seq1  CTGGAGCT-CTGAAGTTTTTGACCTTAACAACTGAAAGAAGAAGGTTTCC  1149
      |||||||| |||||| |||||||||  ||||||| |||||||  |||| |
seq2  CTGGAGCTCCTGAAG-TTTTGACCT--ACAACTG-AAGAAGA--GTTT-C  1136

seq1  ACTGATGAGAAACAATGCAGTTTAACCTCATTGCAGGGTAAAAAGCA  1196
      ||||| | |||| |||||||||||||   |||||||     ||||||
seq2  ACTGA-GTGAAAAAATGCAGTTTAACTCTATTGCAG----TAAAGCA  1178

seq1: chr1_178267430_178268498
seq2: B6Ng01-125I19.g_66_1113 (reverse)

seq1  TTTTATCTGTTTCTTTCTGTCTTGTCTATATTCAGTAATTTTTCCTTTAG  50
      |||||||||  ||||||  ||||||||| || ||| ||||||  | ||||
seq2  TTTTATCTG--TCTTTCGTTCTTGTCTA-ATCCAG-AATTTT--CCTTAG  44

seq1  TTAGAAATTTGGTGGCAAAAAGCTTCTCTAGTTTCAAAATCATCCTACTA  100
       ||| |||||||||||  ||||||||||||||||| ||||||||||||||
seq2  -TAG-AATTTGGTGGC--AAAGCTTCTCTAGTTTC-AAATCATCCTACTA  89

seq1  TATGAGATCGTAGACAAAAGAAACATTATCTAAATTATTTATGCAACAAT  150
      |  ||||||||||||||||| ||||||||||||  ||||||||| |||  
seq2  TTGGAGATCGTAGACAAAAG-AACATTATCTAA--TATTTATGC-ACA--  133

seq1  TCA-CTCATTCAATCAATAAATATTGAATGGCTCTAAAAACCAAACAAGA  199
      ||| |||||   ||| ||||||||||||||||||| ||||||||||||||
seq2  TCACCTCAT--CATC-ATAAATATTGAATGGCTCT-AAAACCAAACAAGA  179

seq1  GAAAAAGGAAAAATAATTTAAAATCTGGGATAATTGAAACATCTGTAGTA  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAGGAAAAATAATTTAAAATCTGGGATAATTGAAACATCTGTAGTA  228

seq1  ATGAATTATGTCTGGGTTTGCCCAGACTGGGGCTGCTACTCTCAGGTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATGTCTGGGTTTGCCCAGACTGGGGCTGCTACTCTCAGGTAAT  278

seq1  ACCGATTTCCATTTAAAATTTCACAGAGAAATCCTCCCAGACTTTACTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATTTCCATTTAAAATTTCACAGAGAAATCCTCCCAGACTTTACTGG  328

seq1  AAGCAGTGATAATATTTACTGGTGTACTTTCTTTTTACAGCTTCAGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGATAATATTTACTGGTGTACTTTCTTTTTACAGCTTCAGAGAG  378

seq1  ACTTTGCACACACACAATCCAGGCCACCAACCTTCTGAGATGCTACAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCACACACACAATCCAGGCCACCAACCTTCTGAGATGCTACAAAC  428

seq1  GGTTCAAGTCTATAGAGAAGTAAAAACGAATCAATCAGTTATAATTATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGTCTATAGAGAAGTAAAAACGAATCAATCAGTTATAATTATGG  478

seq1  CTGGAGTAGAAAAAACCTGAGCCAGACATTACATAAATTTGAGTTTGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAGAAAAAACCTGAGCCAGACATTACATAAATTTGAGTTTGCTT  528

seq1  CCTGGAAACAACCTGACAATTGCATGTGGCACTGAGCAAGTGTAGAATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACAACCTGACAATTGCATGTGGCACTGAGCAAGTGTAGAATCA  578

seq1  TGATTTTTTTTTTTTAAGCCAAGAAAATGATAAATGTTCCAACCATGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTTTTAAGCCAAGAAAATGATAAATGTTCCAACCATGTCT  628

seq1  GGAACTAAGTCACAGTTCAATTAGGAAGACTTTTGTTTTTCCAAATTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAGTCACAGTTCAATTAGGAAGACTTTTGTTTTTCCAAATTAAG  678

seq1  GCGAGGCAGAACAGAAAGACAGCAAGTTATGGGGTCATGAAAGGAAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCAGAACAGAAAGACAGCAAGTTATGGGGTCATGAAAGGAAAATG  728

seq1  AGTCTTTCACTTCTGAGTCACTGATCATCTTTCACTGATGAGTTGGTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCACTTCTGAGTCACTGATCATCTTTCACTGATGAGTTGGTGCC  778

seq1  TCTTATCAGATGTAAAGCAGAAATTCCCAGAGGAAAGAAAAGCCTGCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAGATGTAAAGCAGAAATTCCCAGAGGAAAGAAAAGCCTGCTCC  828

seq1  CAACCCTGACCACCTGGATTCTATCTCCAGAGGTCACATGACAGGAGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGACCACCTGGATTCTATCTCCAGAGGTCACATGACAGGAGAGA  878

seq1  ACTGACTTCCAGTAATTGTCCTCTGACCTCCATACATTCACACGTGTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCCAGTAATTGTCCTCTGACCTCCATACATTCACACGTGTGCT  928

seq1  CTGGCACACTTGTGTCACACATGTATACACACAATAAACAAACAATGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACACTTGTGTCACACATGTATACACACAATAAACAAACAATGTAA  978

seq1  AAATAAAAAGTAAGCAAATTAACACCTGCTTAGGCAATCTTTCCTTTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGTAAGCAAATTAACACCTGCTTAGGCAATCTTTCCTTTTCC  1028

seq1  AGCTACAAACCTAAGAATTC  1069
      ||||||||||||||||||||
seq2  AGCTACAAACCTAAGAATTC  1048