BAC Information

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BAC

Clone NameB6Ng01-125L16
Chromosome1 (Build37)
Map Location 116,789,578 - 116,915,847
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L16.bB6Ng01-125L16.g
ACCDH928281DH928282
length1,0891,084
definitionDH928281|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L16, 5' end.DH928282|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,789,578 - 116,790,672)(116,914,735 - 116,915,847)
sequence
gaattcaagactgaagcctttctccaggaagactggaagaatatgaggaa
cttattacacattaaattccaaaccccaaaattaaatgagttctaatttt
gtcttattgagcttctttcagtttgagcagtcaacaaagtttaacttgct
tcatattaaacactttataatccatgcaatgaaggactccaacaatgtga
agtgaagttcacaaaaagatgtaattataaataaaaataaagttctattt
ggcagatctccttacacaaagagtgaaaattaatacactgaggaaacagg
tttgttctagtttcactgttgttattataataaatacattgacaaaagta
actctgaagaaaaaggaggttttttaacttaaaattccaaattttgtggt
gaagtcaaggcaaaaattttaaacagctagtcatgtcttctccatagaca
agataagaacataaataaatgaatagtcatgctcacatgatttcatgatt
atggtaaaattgatttatctgttcttatactgttaaggatcactgctggg
catggttgcacacgcctttaatcccagcactctggaggcagaggcaggtg
aatttctgagttcaaggccagcctggtctgcaaagtgagtttcaggacag
ccagggcttcacagagaaaaactgtctcaaaaaaccaaaataaaaaaaaa
aaaaaaaaaaaaaagatcactgattgtgggaattttgcaagctacagtgg
gctcagtcttctgaattcaatagacatgctcatagacaaacttgatttag
acagtctttcttggacattttcttccagagaattcttggtttgtgtttta
aagctaaccaccacaggcttttaggtctttggcttattaaatattatgaa
aactatagcagctataatgaggaataggttgttgtcattaaaaaaaatga
gaatggaaatgagtcagccagaacactagcaaataaaattcatcagttta
atagcgcagattatacttagattacatacactggagaaaagattcagagt
tgacccttgtttcagttgttttattgctgaaacatgaca
gaattctcttcaagtttttttttttatttctttatgactttcattttgaa
attgtggattgtcttcatcatttcaattagccttatatttttatttttga
tatttcttgtatttaatttcattcctttaagttgattgagatatttcttt
gtgtcttcatgtactatgctgtggttttaaattccatgttctacagttca
tctctgtaattatcattgatgaacatttttatagcatgtttggaaatgga
tgttggggggctattttcttgatcttcagattgttgttaatttgtgataa
tatatgggtttgtggactacttttgttatttctgtatctgatatgaacgg
agctggattgagaaaaacataggatatataaggccactttggcctaaatt
ttggacatggctttgttggaataaaggtcagatggacacaggatgttggc
gtatgtgagaaatgcatattattctaagtctgtagttttcaggaagctct
gtgttttgaaaaatctgtggaaaggagaaccaggtggacttacctatgta
aaaataagagaaattttaaaagaattaatatataagaattggcatttcaa
aatcgaaaacagtaaaacaagattggtaaagtctctgtcagtggggagaa
agagagggagagagagaaagagagaactagaaaactctgttctgcaattc
acatagaaacataaatgactcagaatgctgaacatactgtgaaccaaaat
ttaaattatttttcacatgaatagtaacaaaagacacatgatctaacttc
aaaaacacgtgtgtgtaatggaaccagacataaatccctcatatcaatag
ccacctaattttgacaaggtgatagcattttgaatgtaataagaaaatac
aaataaaaaatatatatttaaaaaagagttccctatctattagcccctac
aatttcaatgcaaacttatgtagatttatgtaaaaatgaaactttcaggg
aaacatttttaaattaacataggcacgtctttccaaagaaatagatgttc
gaaaaatactgagtggaagacatcggaatccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116789578_116790672
seq2: B6Ng01-125L16.b_50_1138

seq1  GAATTCAAGACTGAAGCCTTTCTCCAGGAAGACTGGAAGAATATGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTGAAGCCTTTCTCCAGGAAGACTGGAAGAATATGAGGAA  50

seq1  CTTATTACACATTAAATTCCAAACCCCAAAATTAAATGAGTTCTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACACATTAAATTCCAAACCCCAAAATTAAATGAGTTCTAATTTT  100

seq1  GTCTTATTGAGCTTCTTTCAGTTTGAGCAGTCAACAAAGTTTAACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTGAGCTTCTTTCAGTTTGAGCAGTCAACAAAGTTTAACTTGCT  150

seq1  TCATATTAAACACTTTATAATCCATGCAATGAAGGACTCCAACAATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAAACACTTTATAATCCATGCAATGAAGGACTCCAACAATGTGA  200

seq1  AGTGAAGTTCACAAAAAGATGTAATTATAAATAAAAATAAAGTTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTTCACAAAAAGATGTAATTATAAATAAAAATAAAGTTCTATTT  250

seq1  GGCAGATCTCCTTACACAAAGAGTGAAAATTAATACACTGAGGAAACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCCTTACACAAAGAGTGAAAATTAATACACTGAGGAAACAGG  300

seq1  TTTGTTCTAGTTTCACTGTTGTTATTATAATAAATACATTGACAAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAGTTTCACTGTTGTTATTATAATAAATACATTGACAAAAGTA  350

seq1  ACTCTGAAGAAAAAGGAGGTTTTTTAACTTAAAATTCCAAATTTTGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGAAAAAGGAGGTTTTTTAACTTAAAATTCCAAATTTTGTGGT  400

seq1  GAAGTCAAGGCAAAAATTTTAAACAGCTAGTCATGTCTTCTCCATAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGGCAAAAATTTTAAACAGCTAGTCATGTCTTCTCCATAGACA  450

seq1  AGATAAGAACATAAATAAATGAATAGTCATGCTCACATGATTTCATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAACATAAATAAATGAATAGTCATGCTCACATGATTTCATGATT  500

seq1  ATGGTAAAATTGATTTATCTGTTCTTATACTGTTAAGGATCACTGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAATTGATTTATCTGTTCTTATACTGTTAAGGATCACTGCTGGG  550

seq1  CATGGTTGCACACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGCACACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGTG  600

seq1  AATTTCTGAGTTCAAGGCCAGCCTGGTCTGCAAAGTGAGTTTCAGGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAGTTCAAGGCCAGCCTGGTCTGCAAAGTGAGTTTCAGGACAG  650

seq1  CCAGGGCTTCACAGAGAAAAACTGTCTCAAAAAACCAAAAAAAAAAAAAA  700
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  CCAGGGCTTCACAGAGAAAAACTGTCTCAAAAAACC-AAAATAAAAAAAA  699

seq1  AAAAAAAAAAAAAAAGATCACTGATTGTGGGAATTTTGCAAGCTACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGATCACTGATTGTGGGAATTTTGCAAGCTACAGTG  749

seq1  GGCTCAGTCTTCTGAATTCAATAGACATGCTCATAGACAAACTTGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTCTTCTGAATTCAATAGACATGCTCATAGACAAACTTGATTTA  799

seq1  GACAGTCTTTCCTGGACATTTTCTTCCCAGAGAATTCTTGG-TTGTGTCT  849
      ||||||||||| ||||||||||||| ||||||||||||||| |||||| |
seq2  GACAGTCTTTCTTGGACATTTTCTT-CCAGAGAATTCTTGGTTTGTGTTT  848

seq1  TAAAGCTAACCACCACAGGCTTTAAGGTCTTTGGC-TATTAAATA-TATG  897
      ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
seq2  TAAAGCTAACCACCACAGGCTTTTAGGTCTTTGGCTTATTAAATATTATG  898

seq1  AAAACTATAGCAGCTATAATGAGGAATAGGTTG-TGTCA-TAAAAAAAAT  945
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  AAAACTATAGCAGCTATAATGAGGAATAGGTTGTTGTCATTAAAAAAAAT  948

seq1  GAGAAATGGAAATGAGTCAGCCAGAACACTAGCAAATAAAAATCCATCAG  995
      ||| ||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  GAG-AATGGAAATGAGTCAGCCAGAACACTAGCAAAT-AAAATTCATCAG  996

seq1  TTAAATAGCGCAGA-TATACTTTAGATTACATACACCTGAGAAAAAGATT  1044
      || ||||||||||| ||||| |||||||||||||||  ||| ||||||||
seq2  TTTAATAGCGCAGATTATAC-TTAGATTACATACACTGGAG-AAAAGATT  1044

seq1  CAAGAGTTGACCACTTGTTTCAAGGTTGTTTTAATAGCTGAAAACATGAC  1094
      | |||||||||| |||||||||  |||||||| || |||| |||||||||
seq2  C-AGAGTTGACC-CTTGTTTCA--GTTGTTTT-ATTGCTG-AAACATGAC  1088

seq1  A  1095
      |
seq2  A  1089

seq1: chr1_116914735_116915847
seq2: B6Ng01-125L16.g_67_1150 (reverse)

seq1  TGTGGATTTCGATTTGTCTTCTCATCCAGTTATTTTCTGAACCATCTATT  50
      |||||||| |||  ||||||| ||  ||| ||||||  ||| |||||| |
seq2  TGTGGATTCCGA--TGTCTTC-CACTCAG-TATTTTTCGAA-CATCTA-T  44

seq1  TTCTTTTGAGAAAGACGTTGCCTATGTTTATATCTAAAAATGTTTTCCCC  100
      ||||||   |||||||| ||||||||||   || |||||||||||  |||
seq2  TTCTTT--GGAAAGACG-TGCCTATGTT--AATTTAAAAATGTTT--CCC  87

seq1  TGAAAAGTTTCATTTTTTACATTAAATTCTACCATTAAGTTTGCATTGAA  150
      || ||||||||| |||||||||  || |||||   |||||||||||||||
seq2  TG-AAAGTTTCA-TTTTTACAT--AAATCTAC--ATAAGTTTGCATTGAA  131

seq1  ATTGTAAGGGGCTATATAGATAGGGAACTCTTTTTTTTTAAATATATATT  200
      ||||| |||||||| |||||||||||||||   |||||||||||||||||
seq2  ATTGT-AGGGGCTA-ATAGATAGGGAACTC---TTTTTTAAATATATATT  176

seq1  TTTTATTTGGTATTTTCTTTATTTACATTCAAAATGCTATCACCTTTGTC  250
      |||||||| ||||||||||   |||||||||||||||||||||| |||||
seq2  TTTTATTT-GTATTTTCTT--ATTACATTCAAAATGCTATCACC-TTGTC  222

seq1  AAAATTAGGTGGCTATTGATATGA-GGATTTATGTCTGGTTCCATTAACA  299
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AAAATTAGGTGGCTATTGATATGAGGGATTTATGTCTGGTTCCATT-ACA  271

seq1  CACACGTGTATTTTGAAGTTAGATCATGTGTCTTTTGTTACTATTCATGT  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGT-TTTTGAAGTTAGATCATGTGTCTTTTGTTACTATTCATGT  320

seq1  GAAAAATAATTTAAATTTTGGTTCACAGTATGTTCAGCATTCTGAGTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATTTAAATTTTGGTTCACAGTATGTTCAGCATTCTGAGTCAT  370

seq1  TTATGTTTCTATGTGAATTGCAGAACAGAGTTTTCTAGTTCTCTCTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTCTATGTGAATTGCAGAACAGAGTTTTCTAGTTCTCTCTTTCT  420

seq1  CTCTCTCCCTCTCTTTCTCCCCACTGACAGAGACTTTACCAATCTTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCTCTCTTTCTCCCCACTGACAGAGACTTTACCAATCTTGTTT  470

seq1  TACTGTTTTCGATTTTGAAATGCCAATTCTTATTTATTAATTCTTTTAAA  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTGTTTTCGATTTTGAAATGCCAATTCTTATATATTAATTCTTTTAAA  520

seq1  ATTTCTCTTATTTTTACATAGGTAAGTCCACCTGGTTCTCCTTTCCACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTATTTTTACATAGGTAAGTCCACCTGGTTCTCCTTTCCACAG  570

seq1  ATTTTTCAAAACACAGAGCTTCCTGAAAACTACAGACTTAGAATAATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAACACAGAGCTTCCTGAAAACTACAGACTTAGAATAATATG  620

seq1  CATTTCTCACATACGCCAACATCCTGTGTCCATCTGACCTTTATTCCAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCACATACGCCAACATCCTGTGTCCATCTGACCTTTATTCCAAC  670

seq1  AAAGCCATGTCCAAAATTTAGGCCAAAGTGGCCTTATATATCCTATGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATGTCCAAAATTTAGGCCAAAGTGGCCTTATATATCCTATGTTT  720

seq1  TTCTCAATCCAGCTCCGTTCATATCAGATACAGAAATAACAAAAGTAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATCCAGCTCCGTTCATATCAGATACAGAAATAACAAAAGTAGTC  770

seq1  CACAAACCCATATATTATCACAAATTAACAACAATCTGAAGATCAAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCCATATATTATCACAAATTAACAACAATCTGAAGATCAAGAAA  820

seq1  ATAGCCCCCCAACATCCATTTCCAAACATGCTATAAAAATGTTCATCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCCCAACATCCATTTCCAAACATGCTATAAAAATGTTCATCAAT  870

seq1  GATAATTACAGAGATGAACTGTAGAACATGGAATTTAAAACCACAGCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTACAGAGATGAACTGTAGAACATGGAATTTAAAACCACAGCATA  920

seq1  GTACATGAAGACACAAAGAAATATCTCAATCAACTTAAAGGAATGAAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGAAGACACAAAGAAATATCTCAATCAACTTAAAGGAATGAAATT  970

seq1  AAATACAAGAAATATCAAAAATAAAAATATAAGGCTAATTGAAATGATGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGAAATATCAAAAATAAAAATATAAGGCTAATTGAAATGATGA  1020

seq1  AGACAATCCACAATTTCAAAATGAAAGTCATAAAGAAATAAAAAAAAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCCACAATTTCAAAATGAAAGTCATAAAGAAATAAAAAAAAAAA  1070

seq1  CTTGAAGAGAATTC  1113
      ||||||||||||||
seq2  CTTGAAGAGAATTC  1084