BAC Information

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BAC

Clone NameB6Ng01-126A09
Chromosome1 (Build37)
Map Location 155,632,760 - 155,813,104
singlet/doubletdoublet
Overlap geneRgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul
Upstream geneNcf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347
Downstream geneLOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126A09.bB6Ng01-126A09.g
ACCDH928500DH928501
length1,126369
definitionDH928500|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A09, 5' end.DH928501|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,811,961 - 155,813,104)(155,632,760 - 155,633,128)
sequence
ggaattcaataaaaacagctaaagagtttgttaaaaatccttttttcctt
cctactttgagattttaatcccattaagaggagagctggaaagacagacc
attagggtctttcccagctcctacaattaatccccttgtccttgtctgtc
agggagcttgtgggtgaagagaagtgcccttcaggaacttggctcctgtg
agtaccataacaagattggccaagagcaggtcctagcgtgcaccctcctg
tctagttttcttgatgttactgcatttttttgtcaggatcattctgggaa
tgtgacttatgtcacctcctagccctaagaacagatctcagtgcctgcta
gaaatggctaaccctttcctgccccacccgacttccaaaccttcttacaa
gccttcctagcttgctgaggaaggccttgaaggctcaggggagttctctt
gttgacattggtggtggtagtgatattgagttttgctttgtttttctcct
gattcaaaacagatggaacaaggaaagaacagttgaaaaattctaaaagc
cacttatctttggcatattgtgaagtgaaaacagaaaagactagaacatc
agttcagtaaacaagcttgcatacacacagcaagtgtctttgatgatcct
gaccagccctgtccagcataaatatttgatccatgtctaggatttaaaat
ctctaggagacacacttaaaacaattcttttaagttgttcttcttcatgt
ctataaaatcagatgtatgttttctttttatggcacatctcatttcaatt
tctttttatggcacgacacatttcaagctcttaatatctacacgtacttc
tctcattgtgggcagcaaagctctacccagcaatgtctcatgtagcaaga
gcatgctagccttggagggtgaaggctgggaggatcaaaagttcaaggtc
atcccttactactggatgagttgaatctactctaagcttcaagaagtcct
gtttcaatggcttaaaacatacacactgaactagtggagaagggttctag
gtgttagtgaacatggccaaactgggcttagttgcatgcaagctaaaaaa
aaaagaacaaaggcagctgggaagga
ttgcttgccctgcctgcccgtcactttgatttttcatttcctatctcagt
ctccactgtctcccgtagctaatctttgctgtcagtttgattgggtaatt
ctgtgaaggtgtttccagagatgcttagtccatgagacccacaggctagg
gtcctgggctgaatacaaatgaggaagtgagttgagagttactgttcaac
tccctctgtttcctgttgagcacgaatgtgtgattagcttcctgcacttc
tgctgacattccccttcaagaagggttgaacctccttgaaatgtaagtaa
aaacaaatatatctctctctttctctttctctctctctctctctctctct
ctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155811961_155813104
seq2: B6Ng01-126A09.b_47_1171 (reverse)

seq1  TCCTTCCCAGCATGCCCTTTTGTTCTTTTTTTTCTTTCTGCTCTTGCTAT  50
      ||||||||||| ||||  |||||||||||||||     |   ||||| ||
seq2  TCCTTCCCAGC-TGCC--TTTGTTCTTTTTTTT-----TTAGCTTGC-AT  41

seq1  GGCAACTATAGCCAAGTCTCTGCCATGGTTCACCTAACCACCTAGAACAC  100
       ||||||| |||| ||| |  ||||| ||||| |||| |||||||||| |
seq2  -GCAACTA-AGCCCAGT-TTGGCCAT-GTTCA-CTAA-CACCTAGAAC-C  84

seq1  CTTCTCCAACTAAGTTCAGTGTGTATGTTTTTAAGCATTGAAACAGGACT  150
      ||||||| ||| ||||||||||||||||||| |  |||||||||||||||
seq2  CTTCTCC-ACT-AGTTCAGTGTGTATGTTTTAAGCCATTGAAACAGGACT  132

seq1  TCTTGTAGCTTAGAGTAGATTCAAACTCATCATGTAGTTAAGGATGACCT  200
      ||||| |||||||||||||||| ||||||||  ||||| | |||||||||
seq2  TCTTGAAGCTTAGAGTAGATTC-AACTCATCCAGTAGTAAGGGATGACCT  181

seq1  TGAACTTTTGATCCT-CCAGCCTTCACCCTCCAAGGGCTAGCATGCTCTT  249
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TGAACTTTTGATCCTCCCAGCCTTCACCCTCCAA-GGCTAGCATGCTCTT  230

seq1  GCTAACATGAGACATTGCTGGGTAGAGCTTTGCTGCCCACAATGAGAGAA  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCT-ACATGAGACATTGCTGGGTAGAGCTTTGCTGCCCACAATGAGAGAA  279

seq1  GTACGTGTAGATATTAAGAGCTTGAAATGTGTCGTGCCATAAAAAGAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTGTAGATATTAAGAGCTTGAAATGTGTCGTGCCATAAAAAGAAAT  329

seq1  TGAATTGAGATGTGCCATAAAAAGAAAACATACATCTGATTTTATAGACA  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGATGTGCCATAAAAAGAAAACATACATCTGATTTTATAGACA  379

seq1  TGAAGAAGAACAACTTAAAAGAATTGTTTTAAGTGTGTCTCCTAGAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAACAACTTAAAAGAATTGTTTTAAGTGTGTCTCCTAGAGATT  429

seq1  TTAAATCCTAGACATGGATC-AATATTTATGCTGGACAGGGCTGGTCAGG  498
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAATCCTAGACATGGATCAAATATTTATGCTGGACAGGGCTGGTCAGG  479

seq1  ATCATCAAAGACACTTGCTGTGTGTATGCAAGCTTGTTTACTGAACTGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAAGACACTTGCTGTGTGTATGCAAGCTTGTTTACTGAACTGAT  529

seq1  GTTCTAGTCTTTTCTGTTTTCACTTCACAATATGCCAAAGATAAGTGGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTCTTTTCTGTTTTCACTTCACAATATGCCAAAGATAAGTGGCT  579

seq1  TTTAGAATTTTTCAACTGTTCTTTCCTTGTTCCATCTGTTTTGAATCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTTTTCAACTGTTCTTTCCTTGTTCCATCTGTTTTGAATCAGG  629

seq1  AGAAAAACAAAGCAAAACTCAATATCACTACCACCACCAATGTCAACAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAAAGCAAAACTCAATATCACTACCACCACCAATGTCAACAAG  679

seq1  AGAACTCCCCTGAGCCTTCAAGGCCTTCCTCAGCAAGCTAGGAAGGCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCCCTGAGCCTTCAAGGCCTTCCTCAGCAAGCTAGGAAGGCTTG  729

seq1  TAAGAAGGTTTGGAAGTCGGGTGGGGCAGGAAAGGGTTAGCCATTTCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGTTTGGAAGTCGGGTGGGGCAGGAAAGGGTTAGCCATTTCTAG  779

seq1  CAGGCACTGAGATCTGTTCTTAGGGCTAGGAGGTGACATAAGTCACATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGAGATCTGTTCTTAGGGCTAGGAGGTGACATAAGTCACATTC  829

seq1  CCAGAATGATCCTGACAAAAAAATGCAGTAACATCAAGAAAACTAGACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGATCCTGACAAAAAAATGCAGTAACATCAAGAAAACTAGACAG  879

seq1  GAGGGTGCACGCTAGGACCTGCTCTTGGCCAATCTTGTTATGGTACTCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCACGCTAGGACCTGCTCTTGGCCAATCTTGTTATGGTACTCAC  929

seq1  AGGAGCCAAGTTCCTGAAGGGCACTTCTCTTCACCCACAAGCTCCCTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAAGTTCCTGAAGGGCACTTCTCTTCACCCACAAGCTCCCTGAC  979

seq1  AGACAAGGACAAGGGGATTAATTGTAGGAGCTGGGAAAGACCCTAATGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGACAAGGGGATTAATTGTAGGAGCTGGGAAAGACCCTAATGGT  1029

seq1  CTGTCTTTCCAGCTCTCCTCTTAATGGGATTAAAATCTCAAAGTAGGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCCAGCTCTCCTCTTAATGGGATTAAAATCTCAAAGTAGGAAG  1079

seq1  GAAAAAAGGATTATTAACAAACTCTTTAGCTGTTTTTATTGAATTC  1144
      |||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGATTTTTAACAAACTCTTTAGCTGTTTTTATTGAATTC  1125

seq1: chr1_155632760_155633128
seq2: B6Ng01-126A09.g_77_445

seq1  TTGCTTGCCCTGCCTGCCCGTCACTTTGATTTTTCATTTCCTATCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCCCTGCCTGCCCGTCACTTTGATTTTTCATTTCCTATCTCAGT  50

seq1  CTCCACTGTCTCCCGTAGCTAATCTTTGCTGTCAGTTTGATTGGGTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTCTCCCGTAGCTAATCTTTGCTGTCAGTTTGATTGGGTAATT  100

seq1  CTGTGAAGGTGTTTCCAGAGATGCTTAGTCCATGAGACCCACAGGCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGTGTTTCCAGAGATGCTTAGTCCATGAGACCCACAGGCTAGG  150

seq1  GTCCTGGGCTGAATACAAATGAGGAAGTGAGTTGAGAGTTACTGTTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCTGAATACAAATGAGGAAGTGAGTTGAGAGTTACTGTTCAAC  200

seq1  TCCCTCTGTTTCCTGTTGAGCACGAATGTGTGATTAGCTTCCTGCACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTTTCCTGTTGAGCACGAATGTGTGATTAGCTTCCTGCACTTC  250

seq1  TGCTGACATTCCCCTTCAAGAAGGGTTGAACCTCCTTGAAATGTAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATTCCCCTTCAAGAAGGGTTGAACCTCCTTGAAATGTAAGTAA  300

seq1  AAACAAATATATCTCTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATATATCTCTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  CTCTCTCTCTCTCTCTCTC  369
      |||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTC  369