BAC Information

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BAC

Clone NameB6Ng01-126C11
Chromosome1 (Build37)
Map Location 97,622,357 - 97,623,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126C11.bB6Ng01-126C11.g
ACCDH928599DH928600
length1,2421,027
definitionDH928599|Mus musculus domesticus DNA, BAC clone: B6Ng01-126C11, 5' end.DH928600|Mus musculus domesticus DNA, BAC clone: B6Ng01-126C11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccaagatatttatattattt
gtgactattgagaaggtgttgtttccctaatttctttctcagcctgttta
ttctttgtatagagaaggcattgacttggtttgagttattttatatcagc
tacttcacgaagctgttttatcaggttaggagtcctctggtaattttagg
gtcacttattatactatctatcattgcaaaaggaaaatggacttcctttc
aattggattccctggattcctgttgccatggtctgcctaaacttcaaggt
actatgttgaaaggataggaggaaaagagtgggcagacgctg
gaattcacttgcagagttactggtgtgtcattgaacttgtttaggccact
gtattaactttagtttattccacttttatgtgactaaatgatcagcaaag
gtcttcaagattcagcaactcaatgcaaattttaaagaatggctcagaat
aattgtattcttatctctatgtgtgttttctgagtgaaggacaaataata
caaacccattcaccctaatcctagaaattctatgaaattgaaatgacatc
aatttcaaagcattattagtaaacaaaactaaattatcttaacaagattg
tgttttgtactttgttggcaatttattgaagttgcactgatgtatatttt
cacaatcactttagaataaagcacctagctttgtttgctttgtttatttg
ttttgtttagcaaatgcttaaattggtcatagtggcaaacacctacccta
tccattgatgagtccaaggtaagatgaccctatgtttgagagtgacagcc
agtgtgataaactgggcaagattctctttaaaaaaaaaaaatcaaagaaa
aaggaaacaacccacacccagagaaccttcaacacaaaatttgtcccacc
tacaaaatgtgcatgaacagagatggggcagaaactgatggaatagccaa
ccaatgactggcccaactttagacccattccaagggagagagacaacccc
tgacactaatactctgctatgcttgcagacaggaacctagcataactgtc
tcctgagtggatgcatccacaagcagcagatggaaacagatgcagagatc
tagtgaagcttgggggagtatgtagaagagtgggggacaggattggacag
cctagactcaagacatgaacagaagactacagagacactgtctgggctac
tgaggtaacagagactggaataccacaaagatcatgcagggctggactag
gtccctaatatttgtgaagatgtgtgctgtcctcctgtgtgtgcctacat
ttaagcagggcttatgtgctctgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97622357_97623405
seq2: B6Ng01-126C11.g_70_1096

seq1  GAATTCACTTGCAGAGTTACTGGTGTGTCATTGAACTTGTTTAGGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCAGAGTTACTGGTGTGTCATTGAACTTGTTTAGGCCACT  50

seq1  GTATTAACTTTAGTTTATTCCACTTTTATGTGACTAAATGATCAGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACTTTAGTTTATTCCACTTTTATGTGACTAAATGATCAGCAAAG  100

seq1  GTCTTCAAGATTCAGCAACTCAATGCAAATTTTAAAGAATGGCTCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGATTCAGCAACTCAATGCAAATTTTAAAGAATGGCTCAGAAT  150

seq1  AATTGTATTCTTATCTCTATGTGTGTTTTCTGAGTGAAGGACAAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATTCTTATCTCTATGTGTGTTTTCTGAGTGAAGGACAAATAATA  200

seq1  CAAACCCATTCACCCTAATCCTAGAAATTCTATGAAATTGAAATGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCATTCACCCTAATCCTAGAAATTCTATGAAATTGAAATGACATC  250

seq1  AATTTCAAAGCATTATTAGTAAACAAAACTAAATTATCTTAACAAGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGCATTATTAGTAAACAAAACTAAATTATCTTAACAAGATTG  300

seq1  TGTTTTGTACTTTGTTGGCAATTTATTGAAGTTGCACTGATGTATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTACTTTGTTGGCAATTTATTGAAGTTGCACTGATGTATATTTT  350

seq1  CACAATCACTTTAGAATAAAGCACCTAGCTTTGTTTGCTTTGTTTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCACTTTAGAATAAAGCACCTAGCTTTGTTTGCTTTGTTTATTTG  400

seq1  TTTTGTTTAGCAAATGCTTAAATTGGTCATAGTGGCAAACACCTACCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAGCAAATGCTTAAATTGGTCATAGTGGCAAACACCTACCCTA  450

seq1  TCCATTGATGAGTCCAAGGTAAGATGACCCTATGTTTGAGAGTGACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGATGAGTCCAAGGTAAGATGACCCTATGTTTGAGAGTGACAGCC  500

seq1  AGTGTGATAAACTGGGCAAGATTCTCTTTAAAAAAAAAAAATCAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATAAACTGGGCAAGATTCTCTTTAAAAAAAAAAAATCAAAGAAA  550

seq1  AAGGAAACAACCCACACCCAGAGAACCTTCAACACAAAATTTGTCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAACCCACACCCAGAGAACCTTCAACACAAAATTTGTCCCACC  600

seq1  TACAAAATGTGCATGAACAGAGATGGGGCAGAAACTGATGGAATAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGTGCATGAACAGAGATGGGGCAGAAACTGATGGAATAGCCAA  650

seq1  CCAATGACTGGCCCAACTTTAGACCCATTCCAAGGGAGAGAGACAACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACTGGCCCAACTTTAGACCCATTCCAAGGGAGAGAGACAACCCC  700

seq1  TGACACTAATACTCTGCTATGCTTGCAGACAGGAACCTAGCATAACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTAATACTCTGCTATGCTTGCAGACAGGAACCTAGCATAACTGTC  750

seq1  TCCTGAGTGGATGCATCCACAAGCAGCAGATGGAAACAGATGCAGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGGATGCATCCACAAGCAGCAGATGGAAACAGATGCAGAGATC  800

seq1  TAGTGAAGCTT-GGGGAGTAATGTAGAAGAGTGGGGGACAGGATTGGACA  849
      ||||||||||| ||||||| ||||||||||||||||||||||||||||| 
seq2  TAGTGAAGCTTGGGGGAGT-ATGTAGAAGAGTGGGGGACAGGATTGGAC-  848

seq1  AGCCTAGGACTCAAGGACATGAACAGAAGACCTACAGAGACCACTGTTCT  899
      |||||| ||||||| ||||||||||||||| ||||||||| ||||| |||
seq2  AGCCTA-GACTCAA-GACATGAACAGAAGA-CTACAGAGA-CACTG-TCT  893

seq1  GGGCCTACTGAGGTACACAGAGACTGGAATACCAACCAAAGATCATGCAG  949
      ||| ||||||||||| ||||||||||||||||||  ||||||||||||| 
seq2  GGG-CTACTGAGGTA-ACAGAGACTGGAATACCA--CAAAGATCATGCA-  938

seq1  GGGCTGGACTAGGTTCCCTAAATATTTGTGACAGATGTGTGCTTGTTCCT  999
      ||||||||||||| ||||| ||||||||||| |||||||||||   ||||
seq2  GGGCTGGACTAGG-TCCCT-AATATTTGTGA-AGATGTGTGCT--GTCCT  983

seq1  CCTGTGTGTTGCCTAACAATTAAAGCAGGGGCTGTATGTGACTCTGTTGC  1049
      |||||||| ||||||   ||| ||||| ||||| |||||| |||||||||
seq2  CCTGTGTG-TGCCTA--CATTTAAGCA-GGGCT-TATGTG-CTCTGTTGC  1027