BAC Information

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BAC

Clone NameB6Ng01-126I11
Chromosome1 (Build37)
Map Location 112,885,961 - 112,886,855
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126I11.bB6Ng01-126I11.g
ACCDH928876DH928877
length1,252912
definitionDH928876|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I11, 5' end.DH928877|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttttggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgccttggcctt
tttgtcttattgattgtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaatcctcgatcttacagcacaagccattgcttttc
tattcaggaattcttcccctgtgcccattacttctaggcttttccccaca
ttctcctctataagttttagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatggattcgaa
ttcttctacatgataacaaccagttgtatcagcacagtttgttgaaaatg
ctgtctttcttccactggatgattttagctcccttgtgaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctatttcattggt
ctacttgtctgtcactataccagtaccatgcagttttgatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactttt
atccttgagaagagtttttgctctcctaggttttttgttattccagatga
atctgctgattgccctttctaattttttgaagaattgagttgtaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactctattgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttatttaatttctttcttcagagacttgaagttcctatcatac
agatctttcacttccttagagtcacaccaaggtattttatattatttgtg
actattgataaggtgttgattccctaatttctttcttagcctgtatcctt
tgtgtacagaaagggcattgacttttttgaggttattttatatcagctag
atagaataaccattggcaagactcactagaaggcaagggaagcatcctat
taacaaaatcagaaatgaaagggagcataacaacgatcctgaagaattca
aaaccatcgatcttctccagcctatatgcaaacctggtacctgtataaag
ggccagttctagacgaatacaggaaccagagtgataaagaccgggggtag
ag
gaattcaaaacatatgggtgggtgtaaaggaagtgttcatatacacttgg
gagttcagagcatattaacaatttactacatcagatggcattcaatgtat
taggcttttattcactttgaaacttaattggagatcccaaatggaaatca
tgcaccatgatgtgagattaggatgtggggagaattggtttctctgcaat
ctgagccaagcagagccacacagggcaggttcagaactaaagcaaaaggc
atacagctaccagcagtgatttgccccagacactcatcaaaggcctctgg
ctgcttcagagagtttaaacttggaagtactgagaacacctgctgtgcaa
acatacagactgctcagaagggagacagaggcagacagtagagatcactc
ccctccaacaagaagataatcaaaggatagagataaatgaaacttgattt
aattgtttttaaagatagaaaggagtacagtggtaattgttttaatgttt
ttaagtatacatggagtgaagaaatctaggtcttttttctcaaatataga
aaacaaaaacatggagaataaaatgaatagaatagaatgaatgagaataa
tgctttaaaggaaatttgaaatagtttgtggtagagtagcaattgtcttc
tttgaacctggtgtactcaggaatcctgggattgcttagcctgatatgac
aaacttggagcctggaaataggcttaaatggtaagtagaatggaatttga
tagaggttaaatacacaggaatggataggaagtgaaataggaaaggatat
taatctccatagaaaggagaatttagtacaaataaatgcgtaactaaact
gaggcttagatctaaattgcagacaaggaagagattggagatatcttatc
tcaaagatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112885961_112886855
seq2: B6Ng01-126I11.g_68_979 (reverse)

seq1  -----------------------TCCTATCTTCTTCCCTTGTCCTGCAAT  27
                             ||| ||| |||| |||||| |||||||
seq2  TCCTATCTTTGAGATAAGATATCTCCAATC-TCTT-CCTTGT-CTGCAAT  47

seq1  TTAAGATCTAAAGCCTCAGTTTAGTTACGCATTTATTTGTACTTAAATTC  77
      || |||||| |||||||||||||||||||||||||||||||| |||||||
seq2  TT-AGATCT-AAGCCTCAGTTTAGTTACGCATTTATTTGTAC-TAAATTC  94

seq1  TCCTTTCTATGGAGATTAATATCCTTTCCTATTTCACTTCCTATCCATTC  127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTATGGAGATTAATATCCTTTCCTATTTCACTTCCTATCCATTC  144

seq1  CTGTGTATTTAACTTCTATCAAATTCCATTCTACTTACCATTTAAGCCTA  177
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTTAACCTCTATCAAATTCCATTCTACTTACCATTTAAGCCTA  194

seq1  TTTCCAGGCTCCAAGTTTGTCATATCAGGCTAAGCAATCCCAGGATTCCT  227
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCTCCAAGTTTGTCATATCAGGCTAAGCAATCCCAGGATTCCT  244

seq1  GAGTACACCAGGTTCAAAGAAGACAATTGCTACTCTACCACAAACTATTT  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACCAGGTTCAAAGAAGACAATTGCTACTCTACCACAAACTATTT  294

seq1  CAAATTTCCTTTAAAGCATTATTCTCATTCATTCTATTCTATTCATTTTA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCCTTTAAAGCATTATTCTCATTCATTCTATTCTATTCATTTTA  344

seq1  TTCTCCATGTTTTTGTTTTCTATATTTGAGAAAAAAGACCTAGATTTCTT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGTTTTTGTTTTCTATATTTGAGAAAAAAGACCTAGATTTCTT  394

seq1  CACTCCATGTATACTTAAAAACATTAAAACAATTACCACTGTACTCCTTT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATGTATACTTAAAAACATTAAAACAATTACCACTGTACTCCTTT  444

seq1  CTATCTTTAAAAACAATTAAATCAAGTTTCATTTATCTCTATCCTTTGAT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTAAAAACAATTAAATCAAGTTTCATTTATCTCTATCCTTTGAT  494

seq1  TATCTTCTTGTTGGAGGGGAGTGATCTCTACTGTCTGCCTCTGTCTCCCT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTGTTGGAGGGGAGTGATCTCTACTGTCTGCCTCTGTCTCCCT  544

seq1  TCTGAGCAGTCTGTATGTTTGCACAGCAGGTGTTCTCAGTACTTCCAAGT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGTCTGTATGTTTGCACAGCAGGTGTTCTCAGTACTTCCAAGT  594

seq1  TTAAACTCTCTGAAGCAGCCAGAGGCCTTTGATGAGTGTCTGGGGCAAAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTCTGAAGCAGCCAGAGGCCTTTGATGAGTGTCTGGGGCAAAT  644

seq1  CACTGCTGGTAGCTGTATGCCTTTTGCTTTAGTTCTGAACCTGCCCTGTG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGGTAGCTGTATGCCTTTTGCTTTAGTTCTGAACCTGCCCTGTG  694

seq1  TGGCTCTGCTTGGCTCAGATTGCAGAGAAACCAATTCTCCCCACATCCTA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGCTTGGCTCAGATTGCAGAGAAACCAATTCTCCCCACATCCTA  744

seq1  ATCTCACATCATGGTGCATGATTTCCATTTGGGATCTCCAATTAAGTTTC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATCATGGTGCATGATTTCCATTTGGGATCTCCAATTAAGTTTC  794

seq1  AAAGTGAATAAAAGCCTAATACATTGAATGCCATCTGATGTAGTAAATTG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAATAAAAGCCTAATACATTGAATGCCATCTGATGTAGTAAATTG  844

seq1  TTAATATGCTCTGAACTCCCAAGTGTATATGAACACTTCCTTTACACCCA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGCTCTGAACTCCCAAGTGTATATGAACACTTCCTTTACACCCA  894

seq1  CCCATATGTTTTGAATTC  895
      ||||||||||||||||||
seq2  CCCATATGTTTTGAATTC  912