BAC Information

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BAC

Clone NameB6Ng01-126P07
Chromosome12 (Build37)1 (Build37)
Map Location 74,917,511 - 74,917,898191,635,483 - 191,635,976
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSix6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385
Downstream geneLOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P07.bB6Ng01-126P07.g
ACCDH929196DH929197
length168488
definitionDH929196|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P07, 5' end.DH929197|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,917,511 - 74,917,898)(191,635,483 - 191,635,976)
sequence
ctcagatttatcagtattcttttcctattttaaaacatttatttattggt
gtgtgtgcgtgcatgtgaatatgtgtgtttctgtgtatatgtgtatatat
gtgtatttgagtgtattgtgtgtatgtatgtttttgtgtatgagtgtgtg
tatgtgtgtatatgtgtg
tccgacaggggacagacccctttaagcagtgatgttgctttttgttaaaa
attctagataaggaattttaggccagttccctgactctgctgtcgttttt
ccctacaccgggggccggggggatggggtgggtattgctaacggtcccct
tctctctccatctgctaaccacatttttaggcatttctgctgacttcttg
ccatatacctggttgtaaccagaaagacaactccttgggtccttgggcgg
ttgactcacgcttccaaggggtaatttaagctcctgttcccacagtgcat
gggagctcatattgtggacacatgatttgcagggcaggcaggtgtgtatt
tcaagcagatgagtcaagtcatatttattactagcctaagagggatgaag
gctccctgctctgcagctgcagttcagaggaggagccagagctggctaat
gagtaggctaccttgtgtcttgatctatttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74917511_74917898
seq2: B6Ng01-126P07.b_113_222 (reverse)

seq1  CACACATATTCTCTCTCACACACACATACACACACACATTCTCTCTCACA  50
      |||||||||          |||||||||||||||| ||| | |    |||
seq2  CACACATAT----------ACACACATACACACACTCATACACAAAAACA  40

seq1  TATGTATTCTCTCTCAC-ATACTCTCAGAT----ATATATACACTCACAC  95
      ||  ||      | ||| |||| |||| ||    ||||||||||  | ||
seq2  TACATA------CACACAATACACTCAAATACACATATATACACATATAC  84

seq1  AGACATTCTCTCTGTCTCTCTCATACACAGTCTCCCTCTTTCTTTCTCTC  145
      | | |  | | |  | | || ||| |||                      
seq2  ACAGAAACACAC-ATAT-TCACATGCAC----------------------  110

seq1  ACACACTTTCTCTGTCTCTCTTGCTCTATGTGTGTCTTTCTGTCTCTCTC  195
                                                        
seq2  --------------------------------------------------  110

seq1  TCTCACACACACATTTTCATACACAGAATCTGTCTCTCTCATACATACAC  245
                                                        
seq2  --------------------------------------------------  110

seq1  ACAATATCTCTCACTCTCTCTCTGTCTCTCTCACACTCACTGCCTCTCAT  295
                                                        
seq2  --------------------------------------------------  110

seq1  CTCTTACTGTCTCTCTATGTGTCTCTGTATCTCTGTTTGTCTGTCTGTCT  345
                                                        
seq2  --------------------------------------------------  110

seq1  CTCATACACACACATTCTCTTTCTCACATATTCTCACATGCAC  388
                                                 
seq2  -------------------------------------------  110

seq1: chr1_191635483_191635976
seq2: B6Ng01-126P07.g_68_561

seq1  GAATTCTCCGACAGGGGACAGACCCCTTTAAGCAGTGATGTTGCTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGACAGGGGACAGACCCCTTTAAGCAGTGATGTTGCTTTTTG  50

seq1  TTAAAAATTCTAGATAAGGAATTTTAGGCCAGTTCCCTGACTCTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTCTAGATAAGGAATTTTAGGCCAGTTCCCTGACTCTGCTGTC  100

seq1  GTTTTTCCCTACACCGGGGGCCGGGGGGATGGGGTGGGTATTGCTAACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCTACACCGGGGGCCGGGGGGATGGGGTGGGTATTGCTAACGG  150

seq1  TCCCCTTCTCTCTCCATCTGCTAACCACATTTTTAGGCATTTCTGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTCTCTCCATCTGCTAACCACATTTTTAGGCATTTCTGCTGAC  200

seq1  TTCTTGCCATATACCTGGTTGTAACCAGAAAGACAACTCCTTGGGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCATATACCTGGTTGTAACCAGAAAGACAACTCCTTGGGTCCTT  250

seq1  GGGCGGTTGACTCACGCTTCCAAGGGGTAATTTAAGCTCCTGTTCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGTTGACTCACGCTTCCAAGGGGTAATTTAAGCTCCTGTTCCCACA  300

seq1  GTGCATGGGAGCTCATATTGTGGACACATGATTTGCAGGGCAGGCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGGAGCTCATATTGTGGACACATGATTTGCAGGGCAGGCAGGTG  350

seq1  TGTATTTCAAGCAGATGAGTCAAGTCATATTTATTACTAGCCTAAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCAAGCAGATGAGTCAAGTCATATTTATTACTAGCCTAAGAGGG  400

seq1  ATGAAGGCTCCCTGCTCTGCAGCTGCAGTTCAGAGGAGGAGCCAGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTCCCTGCTCTGCAGCTGCAGTTCAGAGGAGGAGCCAGAGCTG  450

seq1  GCTAATGAGTAGGCTACCTTGTGTCTTGATCTATTTCCTTCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAGTAGGCTACCTTGTGTCTTGATCTATTTCCTTCCTT  494