BAC Information

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BAC

Clone NameB6Ng01-126P14
Chromosome1 (Build37)
Map Location 87,795,265 - 87,933,652
singlet/doubletdoublet
Overlap geneItm2c, 4933407L21Rik, Gpr55, Spata3
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39
Downstream gene2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P14.bB6Ng01-126P14.g
ACCDH929210DH929211
length1,111162
definitionDH929210|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P14, 5' end.DH929211|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,795,265 - 87,796,373)(87,933,491 - 87,933,652)
sequence
gaattctgggtgcagccaaatgcagtgatctgcatagctacaacctgtcc
ccaggatgcctcaggctggtgccgggaaggtgggagggatcactaatggg
acacccttggctcatgtgtggcacgaactcaggtgaggtgatgtcattgc
tttttggccactgtacactgtcgttctgggacagaaagcatttgccagcc
ttccacccccagcaaggtcttactcagtctgtaggtctaacatacacaca
cacacaaacacacacgcgcgcacagacaccctttggcatccttgcctatg
tgaattgcatcctgcagcctaggaaagaaaagatgccaaggataggaatg
gggtggggagcacttcaaagtctgcctgtgtctgtctttgtccttccctg
cctcctactgagtagcctgtaattgtagcataatccgagctttttttttt
ttttttttttcctttttctctttctttctttttggcattgttactgagga
acggtagctaaagagctgtcatcctttgggctgtatctcagcgagctgtg
tttcagttggtggtttcctatgcattctgtccctggctttgctaactatc
tcgtgcgcaccactgagagccctaggaaaacctgaaggctgagacccagg
gccctttcaggtccccagatgtctgccttgcgtgcttaacttgagtgtgc
agagaggcagtttgctcagagggcctgttgccttagaaacagtatgcacc
atcctcccactttctaaagggggaaagttctcccaatccctgggctgttg
gtaaccatttccatggggggaggggggagccaatatttctcttggtctcc
agcaggatgggtgagtagccaagagtggagggttatccccctcaggaagg
cagactagctaatccacccaccttcactgctgccccacaatcctcggacc
ccaaaggtcttcaattgcaataggtccaagccttggatggccccctaggt
ggagacagtaaggaaaggagtaagctttggctttgaccattgctccagca
agcatgttagggctctgtcctcaagaggtacatcctgagtttcttgcaac
ctcacattcca
agctgctgtgtgtaaagaggcgctggtcactgtggagagaagccacaagg
ctgagagacaaccctgggttcttgtgggaaataacacattgttgctttaa
gttgctaggttgctgggggtgactttttattgattggttggttggttggt
tgattggttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87795265_87796373
seq2: B6Ng01-126P14.b_49_1159

seq1  GAATTCTGGGTGCAGCCAAATGCAGTGATCTGCATAGCTACAACCTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTGCAGCCAAATGCAGTGATCTGCATAGCTACAACCTGTCC  50

seq1  CCAGGATGCCTCAGGCTGGTGCCGGGAAGGTGGGAGGGATCACTAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGCCTCAGGCTGGTGCCGGGAAGGTGGGAGGGATCACTAATGGG  100

seq1  ACACCCTTGGCTCATGTGTGGCACGAACTCAGGTGAGGTGATGTCATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTGGCTCATGTGTGGCACGAACTCAGGTGAGGTGATGTCATTGC  150

seq1  TTTTTGGCCACTGTACACTGTCGTTCTGGGACAGAAAGCATTTGCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCCACTGTACACTGTCGTTCTGGGACAGAAAGCATTTGCCAGCC  200

seq1  TTCCACCCCCAGCAAGGTCTTACTCAGTCTGTAGGTCTAACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCCCAGCAAGGTCTTACTCAGTCTGTAGGTCTAACATACACACA  250

seq1  CACACAAACACACACGCGCGCACAGACACCCTTTGGCATCCTTGCCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACACACGCGCGCACAGACACCCTTTGGCATCCTTGCCTATG  300

seq1  TGAATTGCATCCTGCAGCCTAGGAAAGAAAAGATGCCAAGGATAGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCATCCTGCAGCCTAGGAAAGAAAAGATGCCAAGGATAGGAATG  350

seq1  GGGTGGGGAGCACTTCAAAGTCTGCCTGTGTCTGTCTTTGTCCTTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGAGCACTTCAAAGTCTGCCTGTGTCTGTCTTTGTCCTTCCCTG  400

seq1  CCTCCTACTGAGTAGCCTGTAATTGTAGCATAATCCGAGCTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTGAGTAGCCTGTAATTGTAGCATAATCCGAGCTTTTTTTTTT  450

seq1  TTTTTTTTTTCCTTTTTCTCTTTCTTTCTTTTTGGCATTGTTACTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCTTTTTCTCTTTCTTTCTTTTTGGCATTGTTACTGAGGA  500

seq1  ACGGTAGCTAAAGAGCTGTCATCCTTTGGGCTGTATCTCAGCGAGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCTAAAGAGCTGTCATCCTTTGGGCTGTATCTCAGCGAGCTGTG  550

seq1  TTTCAGTTGGTGGTTTCCTATGCATTCTGTCCCTGGCTTTGCTAACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGGTGGTTTCCTATGCATTCTGTCCCTGGCTTTGCTAACTATC  600

seq1  TCGTGCGCACCACTGAGAGCCCTAGGAAAACCTGAAGGCTGAGACCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCGCACCACTGAGAGCCCTAGGAAAACCTGAAGGCTGAGACCCAGG  650

seq1  GCCCTTTCAGGTCCCCAGATGTCTGCCTTGCGTGCTTAACTTGAGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCAGGTCCCCAGATGTCTGCCTTGCGTGCTTAACTTGAGTGTGC  700

seq1  AGAGAGGCAGTTTGCTCAGAGGGCCTGTTGCCTTAGAAACAGTATGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGTTTGCTCAGAGGGCCTGTTGCCTTAGAAACAGTATGCACC  750

seq1  ATCCTCCCACTTTCTAAAGGGGG-AAGTTCTCCCAATCCCT-GGCTGTTG  798
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  ATCCTCCCACTTTCTAAAGGGGGAAAGTTCTCCCAATCCCTGGGCTGTTG  800

seq1  GTAACCA-TTCCATGGGGG--AGGGGGAG-CAATATTTCTC-TGGTCTCC  843
      ||||||| |||||||||||   ||||||| ||||||||||| ||||||||
seq2  GTAACCATTTCCATGGGGGGAGGGGGGAGCCAATATTTCTCTTGGTCTCC  850

seq1  AGCAGGAT-GGTGAGTAGCC-AGAGTGGA-GGTTAT-CCCCTCAGGAAGG  889
      |||||||| ||||||||||| |||||||| |||||| |||||||||||||
seq2  AGCAGGATGGGTGAGTAGCCAAGAGTGGAGGGTTATCCCCCTCAGGAAGG  900

seq1  CAGACTAGCT-ATCCACCCACCTTCACTGCTGCCCCACAATCCTCAGACC  938
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CAGACTAGCTAATCCACCCACCTTCACTGCTGCCCCACAATCCTCGGACC  950

seq1  CCAAAGGTCTCAGATTGCAAGAGGTCAGAGCCTGTGATGGCCCCCTAGTG  988
      ||||||||||   ||||||| |||||  |||||  |||||||||||||  
seq2  CCAAAGGTCTTCAATTGCAATAGGTCCAAGCCTTGGATGGCCCCCTAGGT  1000

seq1  GGAGACAGTAAGGAAAGGAAGGTAAGCTTTGGCTTTGACTATGTCTCACA  1038
      |||||||||||||||||||  |||||||||||||||||| ||  ||| ||
seq2  GGAGACAGTAAGGAAAGGA--GTAAGCTTTGGCTTTGACCATTGCTC-CA  1047

seq1  GGCAAAAGCAGTGCTAGGGCCTCTGTCCTCAAGAGGGGACATCCTAGATT  1088
      |    ||||| || ||||| |||||||||||||| || ||||||| || |
seq2  G---CAAGCA-TGTTAGGG-CTCTGTCCTCAAGA-GGTACATCCT-GAGT  1090

seq1  TCCTTGCCAACCTCAC-TTCCA  1109
      | |||| ||||||||| |||||
seq2  TTCTTG-CAACCTCACATTCCA  1111

seq1: chr1_87933491_87933652
seq2: B6Ng01-126P14.g_72_233 (reverse)

seq1  ACCAACCAATCAACCAACCAACCAACCAATCAATAAAAAGTCACCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAATCAACCAACCAACCAACCAATCAATAAAAAGTCACCCCCAG  50

seq1  CAACCTAGCAACTTAAAGCAACAATGTGTTATTTCCCACAAGAACCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGCAACTTAAAGCAACAATGTGTTATTTCCCACAAGAACCCAGG  100

seq1  GTTGTCTCTCAGCCTTGTGGCTTCTCTCCACAGTGACCAGCGCCTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCTCAGCCTTGTGGCTTCTCTCCACAGTGACCAGCGCCTCTTTA  150

seq1  CACACAGCAGCT  162
      ||||||||||||
seq2  CACACAGCAGCT  162