BAC Information

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BAC

Clone NameB6Ng01-127H20
Chromosome1 (Build37)
Map Location 62,735,078 - 62,892,924
singlet/doubletdoublet
Overlap geneNrp2, LOC100043070
Upstream genePard3b, LOC667592
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127H20.bB6Ng01-127H20.g
ACCDH929595DH929596
length1,183932
definitionDH929595|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H20, 5' end.DH929596|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,735,078 - 62,736,273)(62,891,987 - 62,892,924)
sequence
gaattcattcatggaccttatcagcatcctctacctctcccctcttctgc
tgcaggatttccctcatgattgacatgattgcatttctgtgttcttgcct
ctcacacagcttgctgttgttcctccatactggttagatggagcattagg
ctgaagcacaacattttgatgttcactctcttacttattggaccccagtt
tgtatctgtgatgatgtgatgtggcttacaggcaaaaatgggacatttgg
gtttagggcttaactctacccgtttcatcttttctttgcatttcaggcct
aattgtacttatttgccctaattaagtcagttttgacatttttaatgtca
cgggccataatgcgaaataataaatattaattgatttttgttggaagagc
ctgagaggtcatctagcctacctcccacccagttcaactcctaacatccc
cgttcctggaaacagtttggcacctccacatcaactctgaaaggagctcc
tgagaggctgcctggatttcctccatgaacgggtccatgagatgccctta
tagagaataagttcattgagtttcctggtaggcaaggaaaagctcaagtg
tctaggcagactccccccattacctgggacattccccactgacagcatca
aaagacaaagttatttccttaggcgagatctgaggtatttccagctgctc
tttcagcttgtctctacgcaaggcagcagcagcaggagttcatgctctga
acccccgttttacaccacttccctacctttggatgaagacctcctcattc
tgtgtcactctgagtcagtggaaatttctagactctttccacagaattcc
ctacccttaagcttcctttttgccatctattcttacttatttctgctttt
aacatcaagtgaataaggtcacaaagaacctgctcttgggtccctaggag
ttgactgctacctcccttgcagagaggagagatgtgtgtgccaattgcta
gatcaggatgactggctcagaggatcccatcacgaggccggtttactcaa
agagtagtcggcaaggttcacctgcaggcaagctgcattgggcatctcag
cctggcagtgccattcttgtgtgggagaacgcagagcaataactagactc
atatggacctccggtgcccaccacagggggcat
gaattctggggtgctcatctcaacagaggaaggagaatgtggttgtattg
agaatgatgccacgtcctcctgatagattttattaattggcatcaaagaa
gatcattaattatttttcactgtggctttcagttggagaaggctgaggtt
tgcatgctaagcaaaatgagcccttcaaaaacctcaacaagccttgtcta
aaaagtcattagaatttgaaagcatcttggttaacctgtaggctcaattt
gttgtttgtgactctttctccatattcagtccttgttgggttcagaacag
aaccaatggtgatagcagcagtctccatgtgaagtagtgatgaactgaag
cctccacgggcttccatcattgcgctgaggaagtttgtttcttcatcatt
ctgcctctccttggtcttgttgctaaagaggtgaagatatttaatcaaac
tcacctaccacatgactacttgcgggtgccaagatggcagcctcttttct
tttgagaccttcacagagcagggcaagcataaggatttgccaagtcacac
ctgatgactggcaggtggtgttgctgggacccttaatgaatgaagcagat
gcatcatgaagctggggcctgaggtaaaaagcaaaagccagaaatggagc
cacatcactggtccctctgctctctccggagttaactgttttgagaaaga
catagtaagaaagcccatgtttcatcaagaccttttatgtctcattttaa
agcttgcctaagttaatcatctactttgtttcatatgccagcattggcat
ttgattaacggcaatagctgatttatggggggagactcaagtgaataatt
tattcctcccatgtaaaggatagctatttctactttaatgaattcattgc
aggtgtttaatggatttttagatggattgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_62735078_62736273
seq2: B6Ng01-127H20.b_43_1225

seq1  GAATTCATTCATGGACCTTATCAGCATCCTCTACCTCTCCCCTCTTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATGGACCTTATCAGCATCCTCTACCTCTCCCCTCTTCTGC  50

seq1  TGCAGGATTTCCCTCATGATTGACATGATTGCATTTCTGTGTTCTTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTTCCCTCATGATTGACATGATTGCATTTCTGTGTTCTTGCCT  100

seq1  CTCACACAGCTTGCTGTTGTTCCTCCATACTGGTTAGATGGAGCATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGCTTGCTGTTGTTCCTCCATACTGGTTAGATGGAGCATTAGG  150

seq1  CTGAAGCACAACATTTTGATGTTCACTCTCTTACTTATTGGACCCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACAACATTTTGATGTTCACTCTCTTACTTATTGGACCCCAGTT  200

seq1  TGTATCTGTGATGATGTGATGTGGCTTACAGGCAAAAATGGGACATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTGATGATGTGATGTGGCTTACAGGCAAAAATGGGACATTTGG  250

seq1  GTTTAGGGCTTAACTCTACCCGTTTCATCTTTTCTTTGCATTTCAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGCTTAACTCTACCCGTTTCATCTTTTCTTTGCATTTCAGGCCT  300

seq1  AATTGTACTTATTTGCCCTAATTAAGTCAGTTTTGACATTTTTAATGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACTTATTTGCCCTAATTAAGTCAGTTTTGACATTTTTAATGTCA  350

seq1  CGGGCCATAATGCGAAATAATAAATATTAATTGATTTTTGTTGGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCATAATGCGAAATAATAAATATTAATTGATTTTTGTTGGAAGAGC  400

seq1  CTGAGAGGTCATCTAGCCTACCTCCCACCCAGTTCAACTCCTAACATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGTCATCTAGCCTACCTCCCACCCAGTTCAACTCCTAACATCCC  450

seq1  CGTTCCTGGAAACAGTTTGGCACCTCCACATCAACTCTGAAAGGAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTGGAAACAGTTTGGCACCTCCACATCAACTCTGAAAGGAGCTCC  500

seq1  TGAGAGGCTGCCTGGATTTCCTCCATGAACGGGTCCATGAGATGCCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCTGCCTGGATTTCCTCCATGAACGGGTCCATGAGATGCCCTTA  550

seq1  TAGAGAATAAGTTCATTGAGTTTCCTGGTAGGCAAGGAAAAGCTCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATAAGTTCATTGAGTTTCCTGGTAGGCAAGGAAAAGCTCAAGTG  600

seq1  TCTAGGCAGACTCCCCCCATTACCTGGGACATTCCCCACTGACAGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAGACTCCCCCCATTACCTGGGACATTCCCCACTGACAGCATCA  650

seq1  AAAGACAAAGTTATTTCCTTAGGCGAGATCTGAGGTATTTCCAGCTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAGTTATTTCCTTAGGCGAGATCTGAGGTATTTCCAGCTGCTC  700

seq1  TTTCAGCTTGTCTCTACGCAAGGCAGCAGCAGCAGGAGTTCATGCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTGTCTCTACGCAAGGCAGCAGCAGCAGGAGTTCATGCTCTGA  750

seq1  ACCCCCGTTTTACACCACTTCCCTACCTTTGGATGAAGACCTCCTCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGTTTTACACCACTTCCCTACCTTTGGATGAAGACCTCCTCATTC  800

seq1  TGTGTCACTCTGAGTCAGTGGAAATTTCTAGACTCTTTCCACAGAATTCC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTGTCACTCTGAGTCAGTGGAAATTTCTAGACTCTTTCCACAGAATT-C  849

seq1  CCTACCCTTAAGCTTCCTTTTTGCCATCTATTCTTACTTATTTCTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTTAAGCTTCCTTTTTGCCATCTATTCTTACTTATTTCTGCTTT  899

seq1  TTAAACATCAAGTGAATAAGGTCACAAAGAACCTGCTCTTGGGTCCCTAG  950
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  T--AACATCAAGTGAATAAGGTCACAAAGAACCTGCTCTTGGGTCCCTAG  947

seq1  GAGTTGACTGCTACCTCCCTTGCAGAGAGGAGAGATGTGTGTGCCAATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACTGCTACCTCCCTTGCAGAGAGGAGAGATGTGTGTGCCAATTG  997

seq1  CTAGATCAGGATGACTGGCTCAGAGGATCCCATCACAGAGGCCGGTTTTA  1050
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  CTAGATCAGGATGACTGGCTCAGAGGATCCCATCAC-GAGGCCGG-TTTA  1045

seq1  CTCAAAGAGTAGGTCGGCATGGTTCACCTGCAGCCAGGCCTGCATTTGGG  1100
      ||||||||||| ||||||| ||||||||||||| || | ||||| |||||
seq2  CTCAAAGAGTA-GTCGGCAAGGTTCACCTGCAGGCAAG-CTGCA-TTGGG  1092

seq1  CATCCTCAGCCTGGCAAGTGCCATTCTTGTG-GAGACAGCACAGAGCAAT  1149
      ||| ||||||||||| ||||||||||||||| | || | | |||||||||
seq2  CAT-CTCAGCCTGGC-AGTGCCATTCTTGTGTGGGAGAACGCAGAGCAAT  1140

seq1  AACTAGACTTCATAATGGACCTTCGCGTGCCCACCAACAGGTGGCAT  1196
      |||||||| |||| |||||||| || ||||||||| ||||| |||||
seq2  AACTAGAC-TCAT-ATGGACCTCCG-GTGCCCACC-ACAGGGGGCAT  1183

seq1: chr1_62891987_62892924
seq2: B6Ng01-127H20.g_66_997 (reverse)

seq1  TTTCAATCCATCTAAAAATACA-TAAACACACTGCAATGAAAATCCATTA  49
      ||||||||||||||||||| || ||||||| ||||||||  ||| |||||
seq2  TTTCAATCCATCTAAAAATCCATTAAACAC-CTGCAATG--AATTCATTA  47

seq1  AAGTAGAAATAGCTAATCCTTTACATGGGGAGAATAAATAATTCACCCTG  99
      |||||||||||||| ||||||||||||||  |||||||| ||||| | ||
seq2  AAGTAGAAATAGCT-ATCCTTTACATGGGAGGAATAAATTATTCA-CTTG  95

seq1  AGGTCTCCCCCCATAAATCAGCTA-TGCCGTT-ATCAAATGCCAATGCTG  147
      | |||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  A-GTCTCCCCCCATAAATCAGCTATTGCCGTTAATCAAATGCCAATGCTG  144

seq1  GCATATGAAAACAAAGTAGATGAATTAAACTTAGGCAAGCTTTAAAATGA  197
      ||||||| |||||||||||||||  | |||||||||||||||||||||||
seq2  GCATATG-AAACAAAGTAGATGA--TTAACTTAGGCAAGCTTTAAAATGA  191

seq1  GACATAAAAGGTCTTGATGAAACATTGGCTTTCTTACTATGTCTTTCTCA  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACATAAAAGGTCTTGATGAAACATGGGCTTTCTTACTATGTCTTTCTCA  241

seq1  AAACAGTTAACTCCGGAGAGAGCAGAGGGACCAGTGATGTGGCTCCATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTAACTCCGGAGAGAGCAGAGGGACCAGTGATGTGGCTCCATTT  291

seq1  CTGGCTTTTGCTTTTTACCTCAGGCCCCAGCTTCATGATGCATCTGCTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTTGCTTTTTACCTCAGGCCCCAGCTTCATGATGCATCTGCTTC  341

seq1  ATTCATTAAGGGTCCCAGCAACACCACCTGCCAGTCATCAGGTGTGACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAAGGGTCCCAGCAACACCACCTGCCAGTCATCAGGTGTGACTT  391

seq1  GGCAAATCCTTATGCTTGCCCTGCTCTGTGAAGGTCTCAAAAGAAAAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATCCTTATGCTTGCCCTGCTCTGTGAAGGTCTCAAAAGAAAAGAG  441

seq1  GCTGCCATCTTGGCACCCGCAAGTAGTCATGTGGTAGGTGAGTTTGATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATCTTGGCACCCGCAAGTAGTCATGTGGTAGGTGAGTTTGATTA  491

seq1  AATATCTTCACCTCTTTAGCAACAAGACCAAGGAGAGGCAGAATGATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCACCTCTTTAGCAACAAGACCAAGGAGAGGCAGAATGATGAA  541

seq1  GAAACAAACTTCCTCAGCGCAATGATGGAAGCCCGTGGAGGCTTCAGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACTTCCTCAGCGCAATGATGGAAGCCCGTGGAGGCTTCAGTTC  591

seq1  ATCACTACTTCACATGGAGACTGCTGCTATCACCATTGGTTCTGTTCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACTTCACATGGAGACTGCTGCTATCACCATTGGTTCTGTTCTGA  641

seq1  ACCCAACAAGGACTGAATATGGAGAAAGAGTCACAAACAACAAATTGAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAAGGACTGAATATGGAGAAAGAGTCACAAACAACAAATTGAGC  691

seq1  CTACAGGTTAACCAAGATGCTTTCAAATTCTAATGACTTTTTAGACAAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTTAACCAAGATGCTTTCAAATTCTAATGACTTTTTAGACAAGG  741

seq1  CTTGTTGAGGTTTTTGAAGGGCTCATTTTGCTTAGCATGCAAACCTCAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGAGGTTTTTGAAGGGCTCATTTTGCTTAGCATGCAAACCTCAGC  791

seq1  CTTCTCCAACTGAAAGCCACAGTGAAAAATAATTAATGATCTTCTTTGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAACTGAAAGCCACAGTGAAAAATAATTAATGATCTTCTTTGAT  841

seq1  GCCAATTAATAAAATCTATCAGGAGGACGTGGCATCATTCTCAATACAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTAATAAAATCTATCAGGAGGACGTGGCATCATTCTCAATACAAC  891

seq1  CACATTCTCCTTCCTCTGTTGAGATGAGCACCCCAGAATTC  938
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCCTTCCTCTGTTGAGATGAGCACCCCAGAATTC  932