BAC Information

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BAC

Clone NameB6Ng01-127K12
Chromosome1 (Build37)
Map Location 116,775,782 - 116,940,429
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127K12.bB6Ng01-127K12.g
ACCDH929714DH929715
length496565
definitionDH929714|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K12, 5' end.DH929715|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,939,928 - 116,940,429)(116,775,782 - 116,776,351)
sequence
cttcccattgaaagggccttcaatctaattagagttattggttatctcca
aaatatgtcagtaaatgtttgacttgtatctccattttatgtacctacat
aaatggaatcatggaaaaagttcttggagcaaagaggttatgaatggaag
agtttaagaatcacattcattgcaatgtgcattcaagtttcttgtgacta
cagttgcatttcagagtgggatagaatgagactggcattttacagaccta
acactggccttaccagctgtcagaaatctctaggcattatattttctatg
gtccattttttctttctattatgtctcatagtccatcttatctctggtat
ttgtcagaatcagtaggcaacattctctcatttgatcttatttattcagc
agtaacatatatgggtgctattgtgtttctttaagtagttttattacctt
ctaaattttactttatatgtataaggtggggtgaggatgggtggga
catgtaaacagaaaagaatttgggttgtgtaaagtaggcatggatgataa
tgcctaggcttttctgatacatctggttattcccagagtactgctgaaag
tgatgatttctactcttccctaaatacagcctagttaacactgaaatttg
gttgatgttctctatgtatctcagtgatttatccctatccttgtccttta
ttttattgtatggatgtgaggtattaaattccattcaagatcaccttttt
ctatttttacttgtatatctgcatgtaagtacacatttatgtctctaatt
gtttctatttctgttgatatatatatatatatatatatatatatatatat
ctttccctgttaattttcctctttggttatatgtctgtggaaatatttac
atgtagctacactgtaacactgattttgaagacctaatccacagaaatga
gaaagtaaaccaataattgagtgaaattaaactcacatcaaaatctataa
aaatgtggttcatgtacatatatgtgtgtgtgtatgtctgtgtgtgtgtg
tgtgtgtgtatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116939928_116940429
seq2: B6Ng01-127K12.b_44_545 (reverse)

seq1  TCCCACCCATCCTCACCCCACCTTATACATATAAAGTAAAATTTAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCATCCTCACCCCACCTTATACATATAAAGTAAAATTTAGAAGG  50

seq1  TAATAAAACTACTTAAAGAAACACAATAGCACCCATATATGTTACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACTACTTAAAGAAACACAATAGCACCCATATATGTTACTGCTG  100

seq1  AATAAATAAGATCAAATGAGAGAATGTTGCCTACTGATTCTGACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGATCAAATGAGAGAATGTTGCCTACTGATTCTGACAAATAC  150

seq1  CAGAGATAAGATGGACTATGAGACATAATAGAAAGAAAAAATGGACCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAAGATGGACTATGAGACATAATAGAAAGAAAAAATGGACCATA  200

seq1  GAAAATATAATGCCTAGAGATTTCTGACAGCTGGTAAGGCCAGTGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATAATGCCTAGAGATTTCTGACAGCTGGTAAGGCCAGTGTTAGG  250

seq1  TCTGTAAAATGCCAGTCTCATTCTATCCCACTCTGAAATGCAACTGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAATGCCAGTCTCATTCTATCCCACTCTGAAATGCAACTGTAGT  300

seq1  CACAAGAAACTTGAATGCACATTGCAATGAATGTGATTCTTAAACTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAACTTGAATGCACATTGCAATGAATGTGATTCTTAAACTCTTC  350

seq1  CATTCATAACCTCTTTGCTCCAAGAACTTTTTCCATGATTCCATTTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAACCTCTTTGCTCCAAGAACTTTTTCCATGATTCCATTTATGT  400

seq1  AGGTACATAAAATGGAGATACAAGTCAAACATTTACTGACATATTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATAAAATGGAGATACAAGTCAAACATTTACTGACATATTTTGGA  450

seq1  GATAACCAATAACTCTAATTAGATTGAAGGCCCTTTCAATGGGAAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCAATAACTCTAATTAGATTGAAGGCCCTTTCAATGGGAAGGAAT  500

seq1  TC  502
      ||
seq2  TC  502

seq1: chr1_116775782_116776351
seq2: B6Ng01-127K12.g_70_640

seq1  GAATTCCATGTAAACAGAAAAGAATTTGGGTTGTGTAAAGTAGGCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAAACAGAAAAGAATTTGGGTTGTGTAAAGTAGGCATGGA  50

seq1  TGATAATGCCTAGGCTTTTCTGATACATCTGGTTATTCCCAGAGTACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGCCTAGGCTTTTCTGATACATCTGGTTATTCCCAGAGTACTGC  100

seq1  TGAAAGTGATGATTTCTACTCTTCCCTAAATACAGCCTAGTTAACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGATGATTTCTACTCTTCCCTAAATACAGCCTAGTTAACACTGA  150

seq1  AATTTGGTTGATGTTCTCTATGTATCTCAGTGATTTATCCCTATCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTGATGTTCTCTATGTATCTCAGTGATTTATCCCTATCCTTGT  200

seq1  CCTTTATTTTATTGTATGGATGTGAGGTATTAAATTCCATTCAAGATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTTATTGTATGGATGTGAGGTATTAAATTCCATTCAAGATCAC  250

seq1  CTTTTTCTATTTTTACTTGTATATCTGCATGTAAGTACACATTTATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTATTTTTACTTGTATATCTGCATGTAAGTACACATTTATGTCT  300

seq1  CTAATTGTTTCTATTTCTGTTGATATATATATATATATATATATATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTTCTATTTCTGTTGATATATATATATATATATATATATATAT  350

seq1  ATATATCTTTCCCTGTTAATTTTCCTCTTTGGTTATATGTCTGTGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTTCCCTGTTAATTTTCCTCTTTGGTTATATGTCTGTGGAAAT  400

seq1  ATTTACATGTAGCTACACTGTAACACTGATTTTGAAGACCTAATCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGTAGCTACACTGTAACACTGATTTTGAAGACCTAATCCACAG  450

seq1  AAATGAGAAAGTAAACCAATAATTGAGTGAAATTAAACTCACATCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAAGTAAACCAATAATTGAGTGAAATTAAACTCACATCAAAAT  500

seq1  CTAT-AAAATGTGGTTCATGTACATATATGTGTGTGTGTATGTCTGTGTG  549
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATGTGGTTCATGTACATATATGTGTGTGTGTATGTCTGTGTG  550

seq1  TGTGTGTGTGTGTGTATGTGT  570
      |||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATGTGT  571