BAC Information

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BAC

Clone NameB6Ng01-127O15
Chromosome1 (Build37)
Map Location 28,488,303 - 28,594,686
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O15.bB6Ng01-127O15.g
ACCDH929904DH929905
length689621
definitionDH929904|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O15, 5' end.DH929905|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,488,303 - 28,488,991)(28,594,075 - 28,594,686)
sequence
gaattcacttgaagacccagaaataaatccacataattatggacacttga
ttttcgaggaaaaacaaaacaaaacaaaacaaacaaacaaacaaaaaaaa
cccaaaaaaaacaaaaaacaaacaaacaaaaaaaaaccaaaaaacttaaa
ccaaagaaagcctcacagaagtggaagctaagttcttatttctgaagacc
atgtgagttaaagatacttcccagaggttcctggccaagaatagatttgc
ctgtcagcgtactacccgaagattttctttttttctttcttttttttttt
ttttatgttgatagtgtgtgcagaagacgtccgccatcctttttcccatc
ttgatatttactgcctgaagactactatcctacagagattacccaaaccc
acagctgtataccataaaccccacctccttgtttaactgtaatagccccc
tttcccttgtcagctgtatacagtagcctcgcctcgctagtcaattcttt
tttttttctttttgaatattttatttcatagtaccagattgtttaatgga
agcctccaaaggagggataccactaaaagtcccacagatgacacctatga
actacaacaatggtgatcctggcacaactcaatagttcagtagtggcatg
catatatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaagggactataattctgttaaaatgtgaaaatgagatggacacg
atagcagaggatacagaagcagatagatctctatgagttcaagggcaccc
aggtttacatagtgagctctaggccatcaagagcttcataatgagacctg
ccttcaaatagcataatgacacataagaaaattatctacaaaatcccatt
aatttttatagtagaggtgattttcttatgatattactaaaacaattgaa
aactccacccctgtcactacccagccagaatattgtcaccatgaaatatg
gtgaggcttaacttttcctattcaattgagtagatcaagaggaaagatac
agattaaccctttacttgtgccaccagtacaagctataaaatctgaatac
ataaagaaatggtggtagaaacccctgtatccatttcatattgtagtgta
ggacaattaaatctaaaaaaatatatagaaaggatatggggggatatttt
agagggataaataaagacagatgtgttcaagttagaaaagagatgggggg
agagaaaaataataaaatactttacgtctggtcactttttctatgagtta
tgtctatatttatttcaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28488303_28488991
seq2: B6Ng01-127O15.b_50_738

seq1  GAATTCACTTGAAGACCCAGAAATAAATCCACATAATTATGGACACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAGACCCAGAAATAAATCCACATAATTATGGACACTTGA  50

seq1  TTTTCGAGGAAAAACAAAACAAAACAAAACAAACAAACAAACAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGGAAAAACAAAACAAAACAAAACAAACAAACAAACAAAAAAAA  100

seq1  CCCAAAAAAAACAAAAAACAAACAAACAAAAAAAAACCAAAAAACTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAAAACAAAAAACAAACAAACAAAAAAAAACCAAAAAACTTAAA  150

seq1  CCAAAGAAAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACC  200

seq1  ATGTGAGTTAAAGATACTTCCCAGAGGTTCCTGGCCAAGAATAGATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTTAAAGATACTTCCCAGAGGTTCCTGGCCAAGAATAGATTTGC  250

seq1  CTGTCAGCGTACTACCCGAAGATTTTCTTTTTTTCTTTCTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGTACTACCCGAAGATTTTCTTTTTTTCTTTCTTTTTTTTTTT  300

seq1  TTTTATGTTGATAGTGTGTGCAGAAGACGTCCGCCATCCTTTTTCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGATAGTGTGTGCAGAAGACGTCCGCCATCCTTTTTCCCATC  350

seq1  TTGATATTTACTGCCTGAAGACTACTATCCTACAGAGATTACCCAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTACTGCCTGAAGACTACTATCCTACAGAGATTACCCAAACCC  400

seq1  ACAGCTGTATACCATAAACCCCACCTCCTTGTTTAACTGTAATAGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTATACCATAAACCCCACCTCCTTGTTTAACTGTAATAGCCCCC  450

seq1  TTTCCCTTGTCAGCTGTATACAGTAGCCTCGCCTCGCTAGTCAATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTGTCAGCTGTATACAGTAGCCTCGCCTCGCTAGTCAATTCTTT  500

seq1  TTTTTTTCTTTTTGAATATTTTATTTCATAGTACCAGATTGTTTAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTGAATATTTTATTTCATAGTACCAGATTGTTTAATGGA  550

seq1  AGCCTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGA  600

seq1  ACTACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATG  650

seq1  CATATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  689
      |||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  689

seq1: chr1_28594075_28594686
seq2: B6Ng01-127O15.g_69_689 (reverse)

seq1  CTCCTGAA--TAATATAGACATTAACTCATAGAAAAAGTGACCAGACGT-  47
      ||||||||   |||||||||| ||||||||||||||||||||||||||| 
seq2  CTCCTGAAATAAATATAGACA-TAACTCATAGAAAAAGTGACCAGACGTA  49

seq1  AAGTA-TTTATT-GTTTTCTCT-CCCCCATCTCTTTTCTAACTTG-ACAC  93
      ||||| ||||||  |||||||| |||||||||||||||||||||| ||||
seq2  AAGTATTTTATTATTTTTCTCTCCCCCCATCTCTTTTCTAACTTGAACAC  99

seq1  ATCTGTCTTTATTTATCCCTCT-AAATAT-CCCCCATATCCTTTCTATAT  141
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  ATCTGTCTTTATTTATCCCTCTAAAATATCCCCCCATATCCTTTCTATAT  149

seq1  A-TTTTTTAGATTTAATTGTCCTACACTACAATATGAAATGGATACAGGG  190
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAGATTTAATTGTCCTACACTACAATATGAAATGGATACAGGG  199

seq1  GTTTCTACCACCATTTCTTTATGTATTCAGATTTTATAGCTTGTACTGGT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCACCATTTCTTTATGTATTCAGATTTTATAGCTTGTACTGGT  249

seq1  GGCACAAGTAAAGGGTTAATCTGTATCTTTCCTCTTGATCTACTCAATTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAGTAAAGGGTTAATCTGTATCTTTCCTCTTGATCTACTCAATTG  299

seq1  AATAGGAAAAGTTAAGCCTCACCATATTTCATGGTGACAATATTCTGGCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAAGTTAAGCCTCACCATATTTCATGGTGACAATATTCTGGCT  349

seq1  GGGTAGTGACAGGGGTGGAGTTTTCAATTGTTTTAGTAATATCATAAGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGACAGGGGTGGAGTTTTCAATTGTTTTAGTAATATCATAAGAA  399

seq1  AATCACCTCTACTATAAAAATTAATGGGATTTTGTAGATAATTTTCTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTCTACTATAAAAATTAATGGGATTTTGTAGATAATTTTCTTAT  449

seq1  GTGTCATTATGCTATTTGAAGGCAGGTCTCATTATGAAGCTCTTGATGGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTATGCTATTTGAAGGCAGGTCTCATTATGAAGCTCTTGATGGC  499

seq1  CTAGAGCTCACTATGTAAACCTGGGTGCCCTTGAACTCATAGAGATCTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTCACTATGTAAACCTGGGTGCCCTTGAACTCATAGAGATCTAT  549

seq1  CTGCTTCTGTATCCTCTGCTATCGTGTCCATCTCATTTTCACATTTTAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTATCCTCTGCTATCGTGTCCATCTCATTTTCACATTTTAAC  599

seq1  AGAATTATTGTCCCTTGAATTC  612
      |||||||| |||||||||||||
seq2  AGAATTATAGTCCCTTGAATTC  621