BAC Information

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BAC

Clone NameB6Ng01-128C02
Chromosome1 (Build37)
Map Location 40,959,783 - 41,050,456
singlet/doubletdoublet
Overlap genePpia-ps1_352.1
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
Downstream geneLOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128C02.bB6Ng01-128C02.g
ACCDH930065DH930066
length6491,083
definitionDH930065|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C02, 5' end.DH930066|Mus musculus domesticus DNA, BAC clone: B6Ng01-128C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,959,783 - 40,960,431)(41,049,352 - 41,050,456)
sequence
gaattctcaatcttagtctttgaagctatgcctggaaaatatctgagaat
gatattactactccttggaatgtctccatgatgataatatatgacatata
tattccagtgtcagggacttcctacattcccttctatttgtaagtcctct
ggatttaatcctgcttcatgatcttgcgggctcatttctgatgagcattg
aaacggtggaggctactttggagattgtaccattgaacaacagtggcctt
cctgttttggattactcttctttcttttggtatgcacagcgcatgcatgt
ttgtatttacatgtgtgtggctgtatttacatatgtgttgaagtagaggt
caaggtcatctgccttcctcaatcactttctttcctctctctctctctct
ctctctctctctctctctctctctctcatattgagcacagccttttgaat
cagctaggctggctggtctacaaagtctaggaatctgtctctatcccctt
gatgctgaggtcacagatgagcattgtttggccagacctttgcttgggcc
ctggggatctgaactaagttctcctggctgtttgacagacaatttaagaa
caccaagctgtcttcctccttcccttcctcctcctcttcctcctcctcc
gaattccattcctcctttggatcatctttcatggttttaaggatgcttgg
agatgattcatttctatgcattcctgaaatagcccaccacgaggccacac
agattcagtgctaccatcctgcatgttcagagctgccccagctggctgag
cacactcatcctgacctgtaggatgggacaatctaatcatccttagggaa
tcccattctctagggtggcatggtcaattctgttcagtttcctctcaatc
ccgacgggtggccaggaggggactgtgacaccaaaggaagaaaaactttt
ctgagacctagatctcaactcagaggatttggaaaaggatttttttttct
tctctaaattaactgagattaatgaggaccacatatgtcaagtgcaaatt
tcattcctaatcattccctctttaaacatttgaggcacactgggttgaaa
agtagctctgggtttgatgtatcatctgccgtagaacagagctcatgtgg
cttcgatgctggtgcctggtgtgctttgtctggtcttacatctgcccacg
attttaataattcacttcattctgagtttgaggtacatgtgttcatcaag
gtttccttttgttcagaaggtcgttgtgtgacccaaatcacaggtctgtc
cttttactaggtccttctggctctgcaaatggtatgttctgtttttattt
atgtgaattagcttgttattcgccccccgcctccgccccgggataccaag
agaggtaaatcattttgtcttaaaatttttaatttctcagtattccactt
gtactgggaagatgtttttcagaccattacttagcatgaacattttactt
taagtcatctagaatccatttgctttgggctattaatcctatttagttaa
agcattgtttattatccatttcctttattctcacccagtctcagtctctg
attttatctctcagcatcgtgcctgatagctctgcatcttcactatttga
agacccaaaggactactacagatcccttctcaacaagtcagcctgcttga
aattcattgaataatggtacgctatctaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40959783_40960431
seq2: B6Ng01-128C02.b_42_690

seq1  GAATTCTCAATCTTAGTCTTTGAAGCTATGCCTGGAAAATATCTGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATCTTAGTCTTTGAAGCTATGCCTGGAAAATATCTGAGAAT  50

seq1  GATATTACTACTCCTTGGAATGTCTCCATGATGATAATATATGACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACTACTCCTTGGAATGTCTCCATGATGATAATATATGACATATA  100

seq1  TATTCCAGTGTCAGGGACTTCCTACATTCCCTTCTATTTGTAAGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGTGTCAGGGACTTCCTACATTCCCTTCTATTTGTAAGTCCTCT  150

seq1  GGATTTAATCCTGCTTCATGATCTTGCGGGCTCATTTCTGATGAGCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAATCCTGCTTCATGATCTTGCGGGCTCATTTCTGATGAGCATTG  200

seq1  AAACGGTGGAGGCTACTTTGGAGATTGTACCATTGAACAACAGTGGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTGGAGGCTACTTTGGAGATTGTACCATTGAACAACAGTGGCCTT  250

seq1  CCTGTTTTGGATTACTCTTCTTTCTTTTGGTATGCACAGCGCATGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGGATTACTCTTCTTTCTTTTGGTATGCACAGCGCATGCATGT  300

seq1  TTGTATTTACATGTGTGTGGCTGTATTTACATATGTGTTGAAGTAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTACATGTGTGTGGCTGTATTTACATATGTGTTGAAGTAGAGGT  350

seq1  CAAGGTCATCTGCCTTCCTCAATCACTTTCTTTCCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATCTGCCTTCCTCAATCACTTTCTTTCCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCATATTGAGCACAGCCTTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCATATTGAGCACAGCCTTTTGAAT  450

seq1  CAGCTAGGCTGGCTGGTCTACAAAGTCTAGGAATCTGTCTCTATCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGCTGGCTGGTCTACAAAGTCTAGGAATCTGTCTCTATCCCCTT  500

seq1  GATGCTGAGGTCACAGATGAGCATTGTTTGGCCAGACCTTTGCTTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGAGGTCACAGATGAGCATTGTTTGGCCAGACCTTTGCTTGGGCC  550

seq1  CTGGGGATCTGAACTAAGTTCTCCTGGCTGTTTGACAGACAATTTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCTGAACTAAGTTCTCCTGGCTGTTTGACAGACAATTTAAGAA  600

seq1  CACCAAGCTGTCTTCCTCCTTCCCTTCCTCCTCCTCTTCCTCCTCCTCC  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCTGTCTTCCTCCTTCCCTTCCTCCTCCTCTTCCTCCTCCTCC  649

seq1: chr1_41049352_41050456
seq2: B6Ng01-128C02.g_65_1147 (reverse)

seq1  TCTCATAGATAGCGTACATTTAATCAATGGAATATCCAAAGCAAGCTGAA  50
      |||| ||||||||||||  ||| ||||| |||| ||  ||||| |||| |
seq2  TCTCCTAGATAGCGTACCATTATTCAAT-GAATTTC--AAGCAGGCTG-A  46

seq1  CTTTGTTTGAG-AGGGATCCTGTAGTAAGTCCCTTTGGGTTCTTTCAAAT  99
      |||   ||||| |||||| ||||||| ||| |||||||||   |||||||
seq2  CTT--GTTGAGAAGGGAT-CTGTAGT-AGT-CCTTTGGGT--CTTCAAAT  89

seq1  AGTGAAGATGCAGGAGCTAATCCAGGGCACGATGCTGAGAGATAAAATCA  149
      |||||||||||| ||||| |||   |||||||||||||||||||||||||
seq2  AGTGAAGATGCA-GAGCT-ATC--AGGCACGATGCTGAGAGATAAAATCA  135

seq1  GAGGACTGGAGGACTTGGGTGAGAAATAAAGGAAATGGATAATTAAACAT  199
      || |||||   ||| |||||||| ||||||||||||||||||| ||  ||
seq2  GA-GACTG--AGAC-TGGGTGAG-AATAAAGGAAATGGATAATAAACAAT  180

seq1  GCCTTTAAACTAAATAGGATTAATAGCCCAAAGCAATTGGATTCTAGATG  249
      ||  || ||||||||||||||||||||||||||||| |||||||||||||
seq2  GC--TTTAACTAAATAGGATTAATAGCCCAAAGCAAATGGATTCTAGATG  228

seq1  ACTTAAAGTAAAATGTTCATGCCTAAGTAATGGTCTGAAAAACATCTTCC  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTAAAGTAAAATGTTCATG-CTAAGTAATGGTCTGAAAAACATCTTCC  277

seq1  CAGTACAAGTGGAATACTGAGAAATTAAAAATTTTAAGACAAAATGATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAGTGGAATACTGAGAAATTAAAAATTTTAAGACAAAATGATTT  327

seq1  ACCTCTCTTGGTATCCCGGGGCGGAGGCGGGGGGCGAATAACAAGCTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTGGTATCCCGGGGCGGAGGCGGGGGGCGAATAACAAGCTAAT  377

seq1  TCACATAAATAAAAACAGAACATACCATTTGCAGAGCCAGAAGGACCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAATAAAAACAGAACATACCATTTGCAGAGCCAGAAGGACCTAG  427

seq1  TAAAAGGACAGACCTGTGATTTGGGTCACACAACGACCTTCTGAACAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGACAGACCTGTGATTTGGGTCACACAACGACCTTCTGAACAAAA  477

seq1  GGAAACCTTGATGAACACATGTACCTCAAACTCAGAATGAAGTGAATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTGATGAACACATGTACCTCAAACTCAGAATGAAGTGAATTAT  527

seq1  TAAAATCGTGGGCAGATGTAAGACCAGACAAAGCACACCAGGCACCAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCGTGGGCAGATGTAAGACCAGACAAAGCACACCAGGCACCAGCA  577

seq1  TCGAAGCCACATGAGCTCTGTTCTACGGCAGATGATACATCAAACCCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCCACATGAGCTCTGTTCTACGGCAGATGATACATCAAACCCAGA  627

seq1  GCTACTTTTCAACCCAGTGTGCCTCAAATGTTTAAAGAGGGAATGATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTTCAACCCAGTGTGCCTCAAATGTTTAAAGAGGGAATGATTAG  677

seq1  GAATGAAATTTGCACTTGACATATGTGGTCCTCATTAATCTCAGTTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAATTTGCACTTGACATATGTGGTCCTCATTAATCTCAGTTAATT  727

seq1  TAGAGAAGAAAAAAAAATCCTTTTCCAAATCCTCTGAGTTGAGATCTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAAAAAAAAATCCTTTTCCAAATCCTCTGAGTTGAGATCTAGG  777

seq1  TCTCAGAAAAGTTTTTCTTCCTTTGGTGTCACAGTCCCCTCCTGGCCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAAGTTTTTCTTCCTTTGGTGTCACAGTCCCCTCCTGGCCACC  827

seq1  CGTCGGGATTGAGAGGAAACTGAACAGAATTGACCATGCCACCCTAGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGGGATTGAGAGGAAACTGAACAGAATTGACCATGCCACCCTAGAGA  877

seq1  ATGGGATTCCCTAAGGATGATTAGATTGTCCCATCCTACAGGTCAGGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTCCCTAAGGATGATTAGATTGTCCCATCCTACAGGTCAGGATG  927

seq1  AGTGTGCTCAGCCAGCTGGGGCAGCTCTGAACATGCAGGATGGTAGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCAGCCAGCTGGGGCAGCTCTGAACATGCAGGATGGTAGCACT  977

seq1  GAATCTGTGTGGCCTCGTGGTGGGCTATTTCAGGAATGCATAGAAATGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGTGGCCTCGTGGTGGGCTATTTCAGGAATGCATAGAAATGAA  1027

seq1  TCATCTCCAAGCATCCTTAAAACCATGAAAGATGATCCAAAGGAGGAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCAAGCATCCTTAAAACCATGAAAGATGATCCAAAGGAGGAATG  1077

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1083