BAC Information

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BAC

Clone NameB6Ng01-128D18
Chromosome4 (Build37)1 (Build37)
Map Location 5,703,915 - 5,705,03448,554,284 - 48,554,811
singlet/doubletsingletsinglet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D18.bB6Ng01-128D18.g
ACCDH930143DH930144
length1,1051,080
definitionDH930143|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D18, 5' end.DH930144|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,703,915 - 5,705,034)(48,554,284 - 48,554,811)
sequence
gaattccatactacactgtacatgtatgtatgtatgtatgtatgaaagaa
caccacgaattccatactacactgtatgtgtacaaatgaacagtaaagct
tcagatccttcgttccacagcccagtcatatccgtcccctgggctctctg
aggcaaatgagcagttccttggtagtacccttgccttcagtgctagttac
agaatgcattccttaccataccaaatcctgacccacagtaacagaaagga
tttccccaatgacaacaacaaccacaaagtttctttttagagctttggag
tcatttagtaaacacagccccaccttcctgatttgggcaaatttatccat
ttcttctttgttccctggctgacactttgtgtgtcctctctgaggatgtc
tcatttaatgttggtcctataaatactctccctttttttctttttgtctc
agaaaacatttctgtttccgattgactacatgtgaaattggctcttctga
gttaatttggatgtggcgtgaggtgctgaggtctttcatggtttgaccca
tggaactcaggtactccagcactgtttgtgcaggagtctgcccctcccag
gaattcgctttgcacattagctgcaggtgaggtggccgtgccaatgtgga
gctgtttctgtgttcttccttctgttcctgccatctgtgtgtctgtcctt
ccagtgtaccatgcagtgtgcactgtcgctggatgtctctgatgtgcagg
aggtaaagtaccaccaaccttctctccttgccagaatccttttagctctt
ttggcttcttctcttttcatataagttttagatgatattttgtacgtttg
caaataagtgatggaaagtttgcttgctcctcatctgtcttctcattcat
tcagcctacttttattatgttttattgtatttaaatagcacacaattagc
ttcattaggatatgtcctacatcactgcactttgtgttgacctcccgtta
ctgcccttgtcaccctctttcctgattctttcttgctagaatgtgccctt
ctactgtagtataggtaataaggtagaagaccgacagaccgaaagatatg
tataa
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttggtgaatttgcttccttttttttctagg
gcttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttctt
cttggagcactcagagctatgagttccctcttagaaatgctttcattggt
gtcccataggttggggtacgtgtggcttcattttcataaacttctaaaag
gttttaatttctttctttattcttccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5703915_5705034
seq2: B6Ng01-128D18.b_43_1147

seq1  GAATTCCATACTACACTGTACATGTATGTATGTATGTATGTATGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTACACTGTACATGTATGTATGTATGTATGTATGAAAGAA  50

seq1  CACCACGAATTCCATACTACACTGTATGTGTACAAATGAACAGTAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGAATTCCATACTACACTGTATGTGTACAAATGAACAGTAAAGCT  100

seq1  TCAGATCCTTCGTTCCACAGCCCAGTCATATCCGTCCCCTGGGCTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCTTCGTTCCACAGCCCAGTCATATCCGTCCCCTGGGCTCTCTG  150

seq1  AGGCAAATGAGCAGTTCCTTGGTAGTACCCTTGCCTTCAGTGCTAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATGAGCAGTTCCTTGGTAGTACCCTTGCCTTCAGTGCTAGTTAC  200

seq1  AGAATGCATTCCTTACCATACCAAATCCTGACCCACAGTAACAGAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATTCCTTACCATACCAAATCCTGACCCACAGTAACAGAAAGGA  250

seq1  TTTCCCCAATGACAACAACAACCACAAAGTTTCTTTTTAGAGCTTTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAATGACAACAACAACCACAAAGTTTCTTTTTAGAGCTTTGGAG  300

seq1  TCATTTAGTAAACACAGCCCCACCTTCCTGATTTGGGCAAATTTATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTAAACACAGCCCCACCTTCCTGATTTGGGCAAATTTATCCAT  350

seq1  TTCTTCTTTGTTCCCTGGCTGACACTTTGTGTGTCCTCTCTGAGGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGTTCCCTGGCTGACACTTTGTGTGTCCTCTCTGAGGATGTC  400

seq1  TCATTTAATGTTGGTCCTATAAATACTCTCCCTTTTTTTCTTTTTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATGTTGGTCCTATAAATACTCTCCCTTTTTTTCTTTTTGTCTC  450

seq1  AGAAAACATTTCTGTTTCCGATTGACTACATGTGAAATTGGCTCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATTTCTGTTTCCGATTGACTACATGTGAAATTGGCTCTTCTGA  500

seq1  GTTAATTTGGATGTGGCGTGAGGTGCTGAGGTCTTTCATGGTTTGACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTGGATGTGGCGTGAGGTGCTGAGGTCTTTCATGGTTTGACCCA  550

seq1  TGGAACTCAGGTACTCCAGCACTGTTTGTGCAGGAGTCTGCCCCTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAGGTACTCCAGCACTGTTTGTGCAGGAGTCTGCCCCTCCCAG  600

seq1  GAATTCGCTTTGCACATTAGCTGCAGGTGAGGTGGCCGTGCCAATGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGCTTTGCACATTAGCTGCAGGTGAGGTGGCCGTGCCAATGTGGA  650

seq1  GCTGTTTCTGTGTTCTTCCTTCTGTTCCTGCCATCTGTGTGTCTGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTGTGTTCTTCCTTCTGTTCCTGCCATCTGTGTGTCTGTCCTT  700

seq1  CCAGTGTACCATGCAGTGTGCACTGTCGCTGGATGTCTCTGATGTGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTACCATGCAGTGTGCACTGTCGCTGGATGTCTCTGATGTGCAGG  750

seq1  AGGTAAAGTACCACCAACCTTCTCTCCTTGCCAGAATCCTTTTAGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGTACCACCAACCTTCTCTCCTTGCCAGAATCCTTTTAGCTCTT  800

seq1  TTGGCTTCTTCTCTTTTCCATATAAGTTTTAGATGATATTTTGTACGTTT  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGGCTTCTTCTCTTTT-CATATAAGTTTTAGATGATATTTTGTACGTTT  849

seq1  GCAAATAAGTGATGGGAAGGTTTGCTTGCTCCTCATCTGTCTTCTCATTC  900
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GCAAATAAGTGAT-GGAAAGTTTGCTTGCTCCTCATCTGTCTTCTCATTC  898

seq1  ATTCAGCCTACTTTTATTATGTTTTAATTGTATTTAAATAGCACACAAAT  950
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  ATTCAGCCTACTTTTATTATGTTTT-ATTGTATTTAAATAGCACAC-AAT  946

seq1  TAGCTTCATTAGGATATGTTCCTACATCACTGCACTTTGTGTTGACCTCC  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCTTCATTAGGATATG-TCCTACATCACTGCACTTTGTGTTGACCTCC  995

seq1  CGTTACCTGCCCTTGTCACCCTCCTTTGCTGATTCCTTTCCTGCCTAGAA  1050
      ||||| |||||||||||||||| |||| |||||| ||||| || ||||||
seq2  CGTTA-CTGCCCTTGTCACCCT-CTTTCCTGATT-CTTTCTTG-CTAGAA  1041

seq1  TAGTGCCCTTCCTACTGTAAGTATAGGTAAATAGGTAGGAAGACAGACAG  1100
      | |||||||| ||||||| |||||||||||  ||||| |||||| |||||
seq2  T-GTGCCCTT-CTACTGT-AGTATAGGTAATAAGGTA-GAAGACCGACAG  1087

seq1  ACAGAAAGATATGGTTATAA  1120
      || ||||||||||  |||||
seq2  ACCGAAAGATATG--TATAA  1105

seq1: chr1_48554284_48554811
seq2: B6Ng01-128D18.g_622_1146 (reverse)

seq1  TCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAA  50
      |||||||| |||||||||||||||||||| || |||||||  || |||||
seq2  TCAAGGAA-GAATAAAGAAAGAAATTAAA-ACCTTTTAGAAGTTTATGAA  48

seq1  AATGAAGCCACAACGTACCCAAACCTATGGGACA-CAATGAAAGCATTTC  99
      ||||||||||| |||||||| ||||||||||||| |||||||||||||||
seq2  AATGAAGCCAC-ACGTACCCCAACCTATGGGACACCAATGAAAGCATTTC  97

seq1  TAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACA  149
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TAAGAGGG-AACTCATAGCTCTGAGTG-CTCCAAGAAGAAACGGGAGACA  145

seq1  GCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAG-AAAAAAAGG  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAAGG  195

seq1  AAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGG  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTCA-CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGG  244

seq1  GGTGAAATCAA-CCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATCAACCCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC  294

seq1  AAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTA  344

seq1  GCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAG  394

seq1  AAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCA  444

seq1  TCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGAC  494

seq1  GAAATGGACAAATTTCTGGACAGATACCAGG  528
      |||||||||||||||||||||||||||||||
seq2  GAAATGGACAAATTTCTGGACAGATACCAGG  525