BAC Information

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BAC

Clone NameB6Ng01-128E17
Chromosome1 (Build37)
Map Location 45,959,811 - 46,105,376
singlet/doubletdoublet
Overlap geneSlc40a1, LOC670603, EG227054, LOC100042453, EG212225
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644
Downstream geneDnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128E17.bB6Ng01-128E17.g
ACCDH930183DH930184
length1,1461,114
definitionDH930183|Mus musculus domesticus DNA, BAC clone: B6Ng01-128E17, 5' end.DH930184|Mus musculus domesticus DNA, BAC clone: B6Ng01-128E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,959,811 - 45,960,993)(46,104,253 - 46,105,376)
sequence
gaattcacctgtgctttgatatcccatttgtctactccttagaaaaaaaa
tacgtgctcccttgtagatctggaaagtgtgagcaagtctacatacaaag
aagaatgtatactttttaatttttaaagtatggggaagatgaacagttca
tacctgtcaggtaaaatatgcacttgctgtcacaagactcaagcatttct
actctagtcttgagctaccatcttgcacaagagaaatattctgatagtaa
ggattattctgaagggtggatcaaagggaagaaagaaggcaccctggatg
aagttgtaatgctttgaagtacgaataatttatggaaaaaggtgaaactc
agggttttttctttattttctttggacattttagtttagtttttggtctt
atctactatcttaggctaagtttatttttaaaatttgtatgtatttttat
tcatgtggtcagtgtgtgctccacatgtgtgcatgtgctcccagaggcct
gaagactcaggtggatctgtgtcatgcatgtgactgctgggaagtgaatc
agactcctctgcaagaacagcaagtgttcctaactgctgaatcatctcta
tagtcccctaaatttatttcttaatcatggtaaaatatactaggaaattt
gtatatctacttactcatgtagtagatctttataatgcttgataaatata
ctaaccgtcaaggtgaacttgactttttgtctttcttcaaactctggata
tattcacagattgatcagtagagaaaaaaccttggcaaacaaactatggt
tatacaacaaggacgtatctctttcacttcatcaaaaaaaaataatatat
atatatgaataaacaaaatgtttaccgtggttactcccaaaaattcagaa
caggtgggaagtgagcatttcagtcaaaccctacacggtttctttttgtc
caagaggatgattatcatgacatttttaaagttgttttaaacatcactgt
tacccacagtgcagtagcacatgaataaggatgagatgccaaatctacct
gacatgataggtagtaatacttctagtttgattgcatcacaaatgtttgc
agtttcctggttccagacttgaatttcgtgtattcatttttcaatc
gaattctctcagaaggtaacataaatgaagatactgaagtgttgtttacc
agaaaagctctaggatctgtggaaaaggttactgggtccttatcagaggg
catatgggggagggtacagggactttgccctaggaacaaagcaattcagt
tttccactggaacaggaagtgtattagtactaggttagatatggctaaat
cttttctacttgaggtagtattagctctgaagccttgcttcaattgtggg
gtgtgaatatcaagtcccccacttcctgctgccaatctcttgaggctctt
atgtagatggactgagtatgaagtgagtgaatgtcagatatgaaacttaa
agatgctcttgctctcaaggtgctgacagagtacacctcctcaaattttc
atcttggatgcctcatgcctcgtccttgtctccattctgctctccttctg
gagaaatttgaagacagagatcacttgtaaataataccagtgtaagttat
gtaagtcctggtgcctgatatatttcagtgtgcctgacaattacaaaaaa
gatctgtcaaatcagcttctttgagatttcctttatattactaccactgt
ctacttaacttcccaaacataaaagcaatgcttcacatgtgtaggtctgt
gtgattgaagtaaactcagtcatctctgtaagttggctcactacatggtt
gtcaataaaaatcacagccaggcgtggtggtgcacgcctttaatcccagc
actcgggaggcagaggcaggtggatttctgagttcaaggccagcctggtc
tacaaagtgagtgccaggacagccagggctacacagagaaaccctgtctt
gaaaactaaaaaataaaaaataaaaatctctctgaggagtcgcaaatacc
aagtaggcattttgatgctttagagaatggagaaatgtatcttcacaaat
gagtaaatgagggcaatctctaaatgatacatggtgatactcttcacaga
ttcaagtgttgatttccctttataggtgtcttcgtctaagttcattcctg
aggccttccagtttgtgtcgtccttgagccatcctctgcacaaggctcat
agccaccaagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45959811_45960993
seq2: B6Ng01-128E17.b_47_1192

seq1  GAATTCACCTGTGCTTTGATATCCCATTTGTCTACTCCTTAGAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTGCTTTGATATCCCATTTGTCTACTCCTTAGAAAAAAAA  50

seq1  TACGTGCTCCCTTGTAGATCTGGAAAGTGTGAGCAAGTCTACATACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCTCCCTTGTAGATCTGGAAAGTGTGAGCAAGTCTACATACAAAG  100

seq1  AAGAATGTATACTTTTTAATTTTTAAAGTATGGGGAAGATGAACAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTATACTTTTTAATTTTTAAAGTATGGGGAAGATGAACAGTTCA  150

seq1  TACCTGTCAGGTAAAATATGCACTTGCTGTCACAAGACTCAAGCATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCAGGTAAAATATGCACTTGCTGTCACAAGACTCAAGCATTTCT  200

seq1  ACTCTAGTCTTGAGCTACCATCTTGCACAAGAGAAATATTCTGATAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTCTTGAGCTACCATCTTGCACAAGAGAAATATTCTGATAGTAA  250

seq1  GGATTATTCTGAAGGGTGGATCAAAGGGAAGAAAGAAGGCACCCTGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTCTGAAGGGTGGATCAAAGGGAAGAAAGAAGGCACCCTGGATG  300

seq1  AAGTTGTAATGCTTTGAAGTACGAATAATTTATGGAAAAAGGTGAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAATGCTTTGAAGTACGAATAATTTATGGAAAAAGGTGAAACTC  350

seq1  AGGGTTTTTTCTTTATTTTCTTTGGACATTTTAGTTTAGTTTTTGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTTCTTTATTTTCTTTGGACATTTTAGTTTAGTTTTTGGTCTT  400

seq1  ATCTACTATCTTAGGCTAAGTTTATTTTTAAAATTTGTATGTATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTATCTTAGGCTAAGTTTATTTTTAAAATTTGTATGTATTTTTAT  450

seq1  TCATGTGGTCAGTGTGTGCTCCACATGTGTGCATGTGCTCCCAGAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTCAGTGTGTGCTCCACATGTGTGCATGTGCTCCCAGAGGCCT  500

seq1  GAAGACTCAGGTGGATCTGTGTCATGCATGTGACTGCTGGGAAGTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCAGGTGGATCTGTGTCATGCATGTGACTGCTGGGAAGTGAATC  550

seq1  AGACTCCTCTGCAAGAACAGCAAGTGTTCCTAACTGCTGAATCATCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTCTGCAAGAACAGCAAGTGTTCCTAACTGCTGAATCATCTCTA  600

seq1  TAGTCCCCTAAATTTATTTCTTAATCATGGTAAAATATACTAGGAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCTAAATTTATTTCTTAATCATGGTAAAATATACTAGGAAATTT  650

seq1  GTATATCTACTTACTCATGTAGTAGATCTTTATAATGCTTGATAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTACTTACTCATGTAGTAGATCTTTATAATGCTTGATAAATATA  700

seq1  CTAACCGTCAAGGTGAACTTGACTTTTTGTCTTTCTTCAAACTCTGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCGTCAAGGTGAACTTGACTTTTTGTCTTTCTTCAAACTCTGGATA  750

seq1  TATTCACAGATTGATCAGTAGAGAAAAAACCTTGGCAAACAAACTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGATTGATCAGTAGAGAAAAAACCTTGGCAAACAAACTATGGT  800

seq1  TATACAACAAGGACGTATCTCTTTCACTTCATCAAAAAAAAATAATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACAAGGACGTATCTCTTTCACTTCATCAAAAAAAAATAATATAT  850

seq1  ATATATGAATAAACAAAATGTTTACCGTGGTTACTCCCAAAAATTCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAATAAACAAAATGTTTACCGTGGTTACTCCCAAAAATTCAGAA  900

seq1  CAGGTTGGGAAGTGAGCATTTCAGTCAAACCCTACACGGTTTTCTTTTTG  950
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGG-TGGGAAGTGAGCATTTCAGTCAAACCCTACACGG-TTTCTTTTTG  948

seq1  TCCAAGAGGAATGAATTATCATGACAATTTTTTAAAAGTTGTTTTAAAAC  1000
      ||||||||| ||| ||||||||||||   |||| ||||||||||| ||||
seq2  TCCAAGAGG-ATG-ATTATCATGACA---TTTTTAAAGTTGTTTT-AAAC  992

seq1  ATCACTGTTTAACCCAACAGTGCAGGTAGCACATGAAATAAAGAAATGAG  1050
      |||||||||  |||| |||||||| |||||||||| ||||| |  |||||
seq2  ATCACTGTT--ACCC-ACAGTGCA-GTAGCACATG-AATAAGG--ATGAG  1035

seq1  ATGCCCAAATCCTTAACATTGACATGATAGGTAGTAAATACTTTCTAGTT  1100
      ||| |||||||  || |  |||||||||||||||| ||||| ||||||||
seq2  ATG-CCAAATC--TACC--TGACATGATAGGTAGT-AATAC-TTCTAGTT  1078

seq1  TGAAATTTGCATCACAAATGTTTGCCAAGTTTTCCCTGGTTCTCCAGACT  1150
      |||   |||||||||||||||||||  |||||  ||||||  ||||||||
seq2  TGA---TTGCATCACAAATGTTTGC--AGTTT--CCTGGT--TCCAGACT  1119

seq1  TTGTAATTTCTGTGTAAATTTCATTTCTCAATC  1183
      |   |||||| |||||   ||||||| ||||||
seq2  T--GAATTTC-GTGTA---TTCATTTTTCAATC  1146

seq1: chr1_46104253_46105376
seq2: B6Ng01-128E17.g_68_1181 (reverse)

seq1  GGAGCTATGTGGCTATGGAGCCCTGTGGCAGAGGATTGGCTCCAGGGACA  50
      ||||||  |||||||| ||||| ||| |||||||| ||||| || |||| 
seq2  GGAGCTTGGTGGCTAT-GAGCCTTGT-GCAGAGGA-TGGCT-CAAGGAC-  45

seq1  GACAAAAACTGGAAGGCCTAAGGAATTGAACTTAGAACGAGACACTCTAT  100
      |||| |||||||||||||| ||||| ||||||||||   |||||| ||||
seq2  GACACAAACTGGAAGGCCTCAGGAA-TGAACTTAGACGAAGACAC-CTAT  93

seq1  AAA-GGAAATCACCACTTGAATCTGTGAAGAGTTATCACCATGTATCATT  149
      ||| |||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AAAGGGAAATCAACACTTGAATCTGTGAAGAG-TATCACCATGTATCATT  142

seq1  TAGAGATTGCCCTCATTTACTCATTTGTGAAGATACATTTCTCCATTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTGCCCTCATTTACTCATTTGTGAAGATACATTTCTCCATTCTC  192

seq1  TAAAAGCATCAAAATGCCTACTTGGTATTTGCGACTCCTCAGAGAGATTT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAGCATCAAAATGCCTACTTGGTATTTGCGACTCCTCAGAGAGATTT  241

seq1  TTATTTTTTATTTTTTTAGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCC  299
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TTATTTTTTA-TTTTTTAG-TTTTCAAGACAGGGTTTCTCTGTGTAGCCC  289

seq1  TGGCTGTCCTGGCACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGCACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAA  339

seq1  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACC  389

seq1  ACGCCTGGCTGTGATTTTTATTGACAACCATGTAGTGAGCCAACTTACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGCTGTGATTTTTATTGACAACCATGTAGTGAGCCAACTTACAG  439

seq1  AGATGACTGAGTTTACTTCAATCACACAGACCTACACATGTGAAGCATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTGAGTTTACTTCAATCACACAGACCTACACATGTGAAGCATTG  489

seq1  CTTTTATGTTTGGGAAGTTAAGTAGACAGTGGTAGTAATATAAAGGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGTTTGGGAAGTTAAGTAGACAGTGGTAGTAATATAAAGGAAAT  539

seq1  CTCAAAGAAGCTGATTTGACAGATCTTTTTTGTAATTGTCAGGCACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAGCTGATTTGACAGATCTTTTTTGTAATTGTCAGGCACACTG  589

seq1  AAATATATCAGGCACCAGGACTTACATAACTTACACTGGTATTATTTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCAGGCACCAGGACTTACATAACTTACACTGGTATTATTTACA  639

seq1  AGTGATCTCTGTCTTCAAATTTCTCCAGAAGGAGAGCAGAATGGAGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTCTGTCTTCAAATTTCTCCAGAAGGAGAGCAGAATGGAGACAA  689

seq1  GGACGAGGCATGAGGCATCCAAGATGAAAATTTGAGGAGGTGTACTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGGCATGAGGCATCCAAGATGAAAATTTGAGGAGGTGTACTCTGT  739

seq1  CAGCACCTTGAGAGCAAGAGCATCTTTAAGTTTCATATCTGACATTCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTGAGAGCAAGAGCATCTTTAAGTTTCATATCTGACATTCACT  789

seq1  CACTTCATACTCAGTCCATCTACATAAGAGCCTCAAGAGATTGGCAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATACTCAGTCCATCTACATAAGAGCCTCAAGAGATTGGCAGCAG  839

seq1  GAAGTGGGGGACTTGATATTCACACCCCACAATTGAAGCAAGGCTTCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGGGACTTGATATTCACACCCCACAATTGAAGCAAGGCTTCAGA  889

seq1  GCTAATACTACCTCAAGTAGAAAAGATTTAGCCATATCTAACCTAGTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATACTACCTCAAGTAGAAAAGATTTAGCCATATCTAACCTAGTACT  939

seq1  AATACACTTCCTGTTCCAGTGGAAAACTGAATTGCTTTGTTCCTAGGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTCCTGTTCCAGTGGAAAACTGAATTGCTTTGTTCCTAGGGCA  989

seq1  AAGTCCCTGTACCCTCCCCCATATGCCCTCTGATAAGGACCCAGTAACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGTACCCTCCCCCATATGCCCTCTGATAAGGACCCAGTAACCT  1039

seq1  TTTCCACAGATCCTAGAGCTTTTCTGGTAAACAACACTTCAGTATCTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGATCCTAGAGCTTTTCTGGTAAACAACACTTCAGTATCTTCA  1089

seq1  TTTATGTTACCTTCTGAGAGAATTC  1124
      |||||||||||||||||||||||||
seq2  TTTATGTTACCTTCTGAGAGAATTC  1114