BAC Information

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BAC

Clone NameB6Ng01-128J16
Chromosome1 (Build37)
Map Location 81,996,853 - 81,997,922
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128J16.bB6Ng01-128J16.g
ACCDH930411DH930412
length8811,055
definitionDH930411|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J16, 5' end.DH930412|Mus musculus domesticus DNA, BAC clone: B6Ng01-128J16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcctttcaaatttgtatccccttgaccttcttttgttgcctaa
ttgctctggctaggacttcaagtactatattgaataggtagggagaaagt
ggggagccttgtctagtccctgattttagtggaattgcttcgagtttctc
tctatttagtttgattttggctactggtttgctgtagattacttttatta
tgtttaggtatgggccttgaattcctgatctttccaatacttttatcatg
aactggtgttgggttttgtcaaatgctttctcagcatctaacgagatggt
catgtggttttgtctttgagtttgtttatatagtggattatgttgaagga
ttttcatatatttaaccatccctgcatccctggaatgaaagctacttggt
cacgatggatgatcgttttgatgtgttcttggattcggttagcgagaatt
ttattgagtattttgcattgatattcataagggaaattggtctgaagttc
tctatctttgttgggtctttctgtggtttaggtattagagtaattgtggc
ttcatagaatgaattggggtagagtaccttctgtttctattttgtggaat
agtttgcgaaaaactatattccttaccttctaaaggtctgatagaactct
gcactaaaaccctgagcttttgtttggttggggagactattaatgactgc
ttctattttttttaggggatataggactgtttaggtcattaatctgatcc
tgattttaactttttgtacctggtatctgtctagaaaatttgttcatttc
attcatgttttcaggtttccagttttgttgagatggcctttgtagaagat
ctgaggggttttggattccccagtttagttg
gaattcaacggttaacaaggacatatggaatcattcaagggaaaaaaaaa
tatttgaaagggatttctgagatgtgatatataggcacagggaggaagac
acctcagtgtgcctctctctgcttccacaaacgactcagaggtgggtgac
tatagaggctggactcttgtttgtcttgaaaggatttctgatctctattt
tatcgacaactgtgttttatacatctgttattccattgcctctctactgg
agcctggcttctgccattgaagaagagttgttttgaggctggttctgttg
atcctatttgttcctgtacttgttcctgccaatcaacccaagactcttgg
tatccctcgagagatgctggcagcccactaagacagaaccaccccagtaa
ggagctcacaaacacagggatgtactacctgtaagtgatctgtgttcctt
tgctcatgtgaatttgtataacttcattagaatgaaactttattttggac
ccaccaaagacaagcaatcccacaatgtgttgggagtgagtggctatgaa
agttgacatgtaagcgcactagagcaggagaatcacgtatttgtgggtca
gtggaacccaagtaatgtcactgcagaatttcgaacagaaaagcaagact
gttggaaatgacattccggtggatacaatctgaggaggtgttggaaggaa
gatgtttatcaaagaatgctcttgtgttaacaaccatggaaagaaaagaa
ggaaaaggcctgggaggaaagaggggatataagatacagcctaatgggac
actctttgaatgtagacctcccctggggcaagagggttctctgcaggtaa
ggtaatacttaagtgctaacatcacttccagactctgaacatgtatttct
cagaggcaaatctaagtggtacacttgggtctgctacagtaacttacctt
cagtaaaaaaaaaatactcatgcctttcctagactagtgaagagtgtgga
gtacatatattttaaatatagcccttctttttgccctgtaatctggattt
atgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81996853_81997922
seq2: B6Ng01-128J16.g_68_1122 (reverse)

seq1  TCCATAAATCCAGATATACAAGTGACAAAAAAGAAAGGGCTATATTTTAA  50
      | ||||||||||||| ||||   | ||||||   |||||||||| |||||
seq2  TTCATAAATCCAGAT-TACA--GGGCAAAAA--GAAGGGCTATA-TTTAA  44

seq1  AATATATGTTCTCCACACCTCTCACTTAGTCTAGGAAAGGCATGAGTATT  100
      ||||||||| ||||||||   |||| ||||||||||||||||||||||||
seq2  AATATATGTACTCCACACTCTTCAC-TAGTCTAGGAAAGGCATGAGTATT  93

seq1  TTTTTTTTTAACTGAAGGTAAGGTTACTGTAGCAGACCCCAAGTTGTACC  150
      ||||||||  ||||||||||| |||||||||||||| |||||| ||||||
seq2  TTTTTTTT--ACTGAAGGTAA-GTTACTGTAGCAGA-CCCAAG-TGTACC  138

seq1  ACTTAGATTTTGCCTCTTGAG-AATACATGTTCAGAGTCTGGAAGTGATG  199
      ||||||| |||||||| |||| ||||||||||||||||||||||||||||
seq2  ACTTAGA-TTTGCCTC-TGAGAAATACATGTTCAGAGTCTGGAAGTGATG  186

seq1  TTAGCACTTTAGTATTACCTTAACCTGCAGAGAACCCTCTTGCCCCAGGG  249
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGCACTTAAGTATTACCTT-ACCTGCAGAGAACCCTCTTGCCCCAGGG  235

seq1  GAGGTCTACATTCAAAGAGTGTCCCATTAGGCCTGTATCTTATATCCCCT  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGGTCTACATTCAAAGAGTGTCCCATTAGG-CTGTATCTTATATCCCCT  284

seq1  CTTTCCTCCCAGGCCTTTTTCCTTCTTTTCTTTCCATGGTTGTTAACACA  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCCAGGCC-TTTTCCTTCTTTTCTTTCCATGGTTGTTAACACA  333

seq1  AGAGCATTCTTTGATAAACATCTTCCTTCCAACACCTCCTCAGATTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTCTTTGATAAACATCTTCCTTCCAACACCTCCTCAGATTGTAT  383

seq1  CCACCGGAATGTCATTTCCAACAGTCTTGCTTTTCTGTTCGAAATTCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGGAATGTCATTTCCAACAGTCTTGCTTTTCTGTTCGAAATTCTGC  433

seq1  AGTGACATTACTTGGGTTCCACTGACCCACAAATACGTGATTCTCCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATTACTTGGGTTCCACTGACCCACAAATACGTGATTCTCCTGCT  483

seq1  CTAGTGCGCTTACATGTCAACTTTCATAGCCACTCACTCCCAACACATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCGCTTACATGTCAACTTTCATAGCCACTCACTCCCAACACATTG  533

seq1  TGGGATTGCTTGTCTTTGGTGGGTCCAAAATAAAGTTTCATTCTAATGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCTTGTCTTTGGTGGGTCCAAAATAAAGTTTCATTCTAATGAA  583

seq1  GTTATACAAATTCACATGAGCAAAGGAACACAGATCACTTACAGGTAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAAATTCACATGAGCAAAGGAACACAGATCACTTACAGGTAGTA  633

seq1  CATCCCTGTGTTTGTGAGCTCCTTACTGGGGTGGTTCTGTCTTAGTGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGTGTTTGTGAGCTCCTTACTGGGGTGGTTCTGTCTTAGTGGGC  683

seq1  TGCCAGCATCTCTCGAGGGATACCAAGAGTCTTGGGTTGATTGGCAGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCATCTCTCGAGGGATACCAAGAGTCTTGGGTTGATTGGCAGGAA  733

seq1  CAAGTACAGGAACAAATAGGATCAACAGAACCAGCCTCAAAACAACTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAGGAACAAATAGGATCAACAGAACCAGCCTCAAAACAACTCTT  783

seq1  CTTCAATGGCAGAAGCCAGGCTCCAGTAGAGAGGCAATGGAATAACAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGGCAGAAGCCAGGCTCCAGTAGAGAGGCAATGGAATAACAGAT  833

seq1  GTATAAAACACAGTTGTCGATAAAATAGAGATCAGAAATCCTTTCAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACACAGTTGTCGATAAAATAGAGATCAGAAATCCTTTCAAGAC  883

seq1  AAACAAGAGTCCAGCCTCTATAGTCACCCACCTCTGAGTCGTTTGTGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGTCCAGCCTCTATAGTCACCCACCTCTGAGTCGTTTGTGGAA  933

seq1  GCAGAGAGAGGCACACTGAGGTGTCTTCCTCCCTGTGCCTATATATCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGGCACACTGAGGTGTCTTCCTCCCTGTGCCTATATATCACA  983

seq1  TCTCAGAAATCCCTTTCAAATATTTTTTTTTCCCTTGAATGATTCCATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAATCCCTTTCAAATATTTTTTTTTCCCTTGAATGATTCCATAT  1033

seq1  GTCCTTGTT-CCCGTTGAATTC  1070
      |||||||||  |||||||||||
seq2  GTCCTTGTTAACCGTTGAATTC  1055