BAC Information

Click to search

BAC

Clone NameB6Ng01-128O17
Chromosome1 (Build37)
Map Location 82,681,445 - 82,819,589
singlet/doubletdoublet
Overlap geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream geneHrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128O17.bB6Ng01-128O17.g
ACCDH930642DH930643
length7091,070
definitionDH930642|Mus musculus domesticus DNA, BAC clone: B6Ng01-128O17, 5' end.DH930643|Mus musculus domesticus DNA, BAC clone: B6Ng01-128O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,681,445 - 82,682,153)(82,818,516 - 82,819,589)
sequence
gaattcctgatctttccaagacttttatcatgaaggggtgttggattttg
tcaaatgctttctcagcatctaacgagatgatcatgtgggttttttttta
attaggtatttatttcatttacgtttccaatgctatcccaaaagtccccc
ccacgctcccccccaaccccccccccccactcgcacttcttggccctggc
attcccctgtactgaggcagataaagtttgcacgaccaatgggcctctct
ttccactgatggccgactaggccatcttctgatacatatgcagttagaga
cacgagctccggggggtactggttagttcatattgttgttccacctatag
ggttgctagctcaagccaattcttaagaggctcaaatctaatcctcttga
tcagattggacctcaagcaacattaaacaaacagaatttctgagtaaaaa
ttacctttgaggataaactcttaccaaaaaaaagcattaaaaaaaaagat
tgtggctgcagacccacattatagtggagaaagatctcatgtgacttaag
aaatcagctattcatcaataatattgttgtgtttctgtaaaagtttattc
tggtagacaatatgatattatgcagtatttacaataatgaatttggaaat
gggattaaaattacgaattctcaaactgtaatatgtgtgtgtgtgtgtgt
gtgtgtgtg
gaattcatgtctgataactgtcaatagaggagaaagatatttgcacacgc
tcctgtaaacgaactcctggccacaccttgtaaacaaccctaatgaaatc
cattgggtcactaaataaatagacatagaaagagagtagaagggcagaca
acaatgcggtgtccatgctaggcttgctgctgcggacattccggcaggca
gttcctccatcagtgtcaggtcaagttcaaggttactatgtagactggag
aatgttgagtgatttgaagagacagaaaatggcttatgaatatgcagatg
agaggctttggatcaattcgctcagaaagaataccattttgccaaaggat
cttcaggaaatagctggtgatgaaattgctgcccttccacgggatagcta
tcctgttagaatcagaaatcggtgtgttatgatatgacatctcgcccacg
tagtgttaagcgttgctggaaacttagtcgcattgtcttctgccacttag
ctgaccatgggctactttctggagtccagcgagcaatatggtaaaaccat
ttcagaacctgcccagctgggaagccaatcctggcaggagacttaagacc
aaaccctaggtcttacaagggtctagtatgtttagtctacttaaccctga
gttaaattacttttacattttaaataatgtggctatttgtcattgaattt
gtctttcaactttaaaacatagtataaagtttattccacatagagtggaa
taaaaatattttctgtgaaaaaaaagagagtagaaggggctaattgggaa
tgagaatcagattaattgggtaagggaggggcagaagagagagcaaggag
ctagatgattgaataacttatactaacaacctttcaatgactgaaagcat
actttagcatccagaggcggaggtcatgtgatgagagccaaaaagccaca
gtgagatgctaaggaccagcttcggcatggagcggggttctgacagaagg
gtgtcttgaagtagctaaacaaatgacttcaaagtcaaattgagggtgca
gatgctgcttggttctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82681445_82682153
seq2: B6Ng01-128O17.b_47_755

seq1  GAATTCCTGATCTTTCCAAGACTTTTATCATGAAGGGGTGTTGGATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTATCATGAAGGGGTGTTGGATTTTG  50

seq1  TCAAATGCTTTCTCAGCATCTAACGAGATGATCATGTGGGTTTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTCTCAGCATCTAACGAGATGATCATGTGGGTTTTTTTTTA  100

seq1  ATTAGGTATTTATTTCATTTACGTTTCCAATGCTATCCCAAAAGTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTATTTCATTTACGTTTCCAATGCTATCCCAAAAGTCCCCC  150

seq1  CCACGCTCCCCCCCAACCCCCCCCCCCCACTCGCACTTCTTGGCCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCCCCCCCAACCCCCCCCCCCCACTCGCACTTCTTGGCCCTGGC  200

seq1  ATTCCCCTGTACTGAGGCAGATAAAGTTTGCACGACCAATGGGCCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGTACTGAGGCAGATAAAGTTTGCACGACCAATGGGCCTCTCT  250

seq1  TTCCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGTTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGTTAGAGA  300

seq1  CACGAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  350

seq1  GGTTGCTAGCTCAAGCCAATTCTTAAGAGGCTCAAATCTAATCCTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTAGCTCAAGCCAATTCTTAAGAGGCTCAAATCTAATCCTCTTGA  400

seq1  TCAGATTGGACCTCAAGCAACATTAAACAAACAGAATTTCTGAGTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGACCTCAAGCAACATTAAACAAACAGAATTTCTGAGTAAAAA  450

seq1  TTACCTTTGAGGATAAACTCTTACCAAAAAAAAGCATTAAAAAAAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTGAGGATAAACTCTTACCAAAAAAAAGCATTAAAAAAAAAGAT  500

seq1  TGTGGCTGCAGACCCACATTATAGTGGAGAAAGATCTCATGTGACTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCAGACCCACATTATAGTGGAGAAAGATCTCATGTGACTTAAG  550

seq1  AAATCAGCTATTCATCAATAATATTGTTGTGTTTCTGTAAAAGTTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCTATTCATCAATAATATTGTTGTGTTTCTGTAAAAGTTTATTC  600

seq1  TGGTAGACAATATGATATTATGCAGTATTTACAATAATGAATTTGGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACAATATGATATTATGCAGTATTTACAATAATGAATTTGGAAAT  650

seq1  GGGATTAAAATTACGAATTCTCAAACTGTAATATGTGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAATTACGAATTCTCAAACTGTAATATGTGTGTGTGTGTGTGT  700

seq1  GTGTGTGTG  709
      |||||||||
seq2  GTGTGTGTG  709

seq1: chr1_82818516_82819589
seq2: B6Ng01-128O17.g_68_1137 (reverse)

seq1  CAGCAGAACCAAGCAGCCATCTTGCACCCTCAATTTGACTTTG-AGTCAT  49
      |||||||||||||||| |||| ||||||||||||||||||||| ||||||
seq2  CAGCAGAACCAAGCAG-CATC-TGCACCCTCAATTTGACTTTGAAGTCAT  48

seq1  TTGTTTTAGCTACTTTCAGACACCCCTTCTGTCAGAACCCCGCTCCATGC  99
      ||| |||||||||||  ||||| |||||||||||||||||||||||||||
seq2  TTG-TTTAGCTACTTCAAGACA-CCCTTCTGTCAGAACCCCGCTCCATGC  96

seq1  CGAGGCTGGTCCTTGGCATCTCACTGTGGCTTTTTGGCTCTCAATCACAT  149
      ||| |||||||||| ||||||||||||||||||||||||||| |||||||
seq2  CGAAGCTGGTCCTTAGCATCTCACTGTGGCTTTTTGGCTCTC-ATCACAT  145

seq1  GACCT-CGCCTCTGGATGCTAAAGTATGCTTTCAGTCATTGAAAGGTTGT  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCGCCTCTGGATGCTAAAGTATGCTTTCAGTCATTGAAAGGTTGT  195

seq1  TAGTATAAGTTATTCAATCATCTAGCTCCTTGCTCTCTCTTCTGCCCCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGTTATTCAATCATCTAGCTCCTTGCTCTCTCTTCTGCCCCTC  245

seq1  CCTTACCC-ATTAATCTGATTCTCATTCCCAATTAGCCCCCTTCTACTCT  297
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTACCCAATTAATCTGATTCTCATTCCCAATTAG-CCCCTTCTACTCT  294

seq1  CTTTTTTTTTCACAGAAAATATTTTTATTCCACTCTATGTGGAATAAAAC  347
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  C-TTTTTTTTCACAGAAAATATTTTTATTCCACTCTATGTGGAAT-AAAC  342

seq1  TTTATACTATGTTTTAAAGTTGAAAGAC-AATTCAATGACAAATAGCCAC  396
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTATACTATGTTTTAAAGTTGAAAGACAAATTCAATGACAAATAGCCAC  392

seq1  ATTATTTAAAATGTAAAAGTAATTTAACTCAGGGTTAAGTAGACTAAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAATGTAAAAGTAATTTAACTCAGGGTTAAGTAGACTAAACA  442

seq1  TACTAGACCCTTGTAAGACCTAGGGTTTGGTCTTAAGTCTCCTGCCAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACCCTTGTAAGACCTAGGGTTTGGTCTTAAGTCTCCTGCCAGGA  492

seq1  TTGGCTTCCCAGCTGGGCAGGTTCTGAAATGGTTTTACCATATTGCTCGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCCAGCTGGGCAGGTTCTGAAATGGTTTTACCATATTGCTCGC  542

seq1  TGGACTCCAGAAAGTAGCCCATGGTCAGCTAAGTGGCAGAAGACAATGCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCAGAAAGTAGCCCATGGTCAGCTAAGTGGCAGAAGACAATGCG  592

seq1  ACTAAGTTTCCAGCAACGCTTAACACTACGTGGGCGAGATGTCATATCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTCCAGCAACGCTTAACACTACGTGGGCGAGATGTCATATCAT  642

seq1  AACACACCGATTTCTGATTCTAACAGGATAGCTATCCCGTGGAAGGGCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCGATTTCTGATTCTAACAGGATAGCTATCCCGTGGAAGGGCAG  692

seq1  CAATTTCATCACCAGCTATTTCCTGAAGATCCTTTGGCAAAATGGTATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCATCACCAGCTATTTCCTGAAGATCCTTTGGCAAAATGGTATTC  742

seq1  TTTCTGAGCGAATTGATCCAAAGCCTCTCATCTGCATATTCATAAGCCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCGAATTGATCCAAAGCCTCTCATCTGCATATTCATAAGCCAT  792

seq1  TTTCTGTCTCTTCAAATCACTCAACATTCTCCAGTCTACATAGTAACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCTTCAAATCACTCAACATTCTCCAGTCTACATAGTAACCTT  842

seq1  GAACTTGACCTGACACTGATGGAGGAACTGCCTGCCGGAATGTCCGCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGACCTGACACTGATGGAGGAACTGCCTGCCGGAATGTCCGCAGC  892

seq1  AGCAAGCCTAGCATGGACACCGCATTGTTGTCTGCCCTTCTACTCTCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCTAGCATGGACACCGCATTGTTGTCTGCCCTTCTACTCTCTTT  942

seq1  CTATGTCTATTTATTTAGTGACCCAATGGATTTCATTAGGGTTGTTTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTATTTATTTAGTGACCCAATGGATTTCATTAGGGTTGTTTACA  992

seq1  AGGTGTGGCCAGGAGTTCGTTTACAGGAGCGTGTGCAAATATCTTTCTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGCCAGGAGTTCGTTTACAGGAGCGTGTGCAAATATCTTTCTCC  1042

seq1  TCTATTGACAGTTATCAGACATGAATTC  1074
      ||||||||||||||||||||||||||||
seq2  TCTATTGACAGTTATCAGACATGAATTC  1070