BAC Information

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BAC

Clone NameB6Ng01-129C03
Chromosome1 (Build37)
Map Location 7,422,209 - 7,568,442
singlet/doubletdoublet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C03.bB6Ng01-129C03.g
ACCDH930801DH930802
length1,1771,065
definitionDH930801|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C03, 5' end.DH930802|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,567,245 - 7,568,442)(7,422,209 - 7,423,282)
sequence
gaattcatgaatctggaagacaactggcagattcttcctaggactacagg
cacttttaaaaggatgtcacagaatgatatgcaaacattggtatctcttg
tctaaataaatgctggcacgcatagtttcccttacatattaggccaacaa
aatggtgatgtaagtcgtttcaattttataaagtgctcagcagaggtcca
tctgatcagagaaagataacaatagaggaagaacatttctcaacatgaaa
agttgccactattgatctggcttccagtgtgaactcgctaataaaaacat
attcactattctaacagtcaccttggcaacctcactcttacatgacagta
gaaaatgggagaacactatatttgtctgtatctaatggcacaataaaagg
aaatataggttcaatgttcccaactattttataaatttagcaacttattt
ttccaaaaccttgaaatcacaaagaaaaaagtacagtagatagaagaaaa
tgaccaccagtgtgtgagttttcagtgtatatgtttatgaaacacaactc
tggatatctgaatctagaagatgaagttgaggaaaaatgtcatcaattct
ggcatatggcaaaggtctgagaaaggagcattacatggtgacaattgcca
ccaagcccttcctgtcctgcttgcacatgatccagagaatttcatatttg
aagtgcatcattatgcagcaattttcaccgaagtcatatgagattaaaac
acgcacttttcagtacagtattaagtaaggatgatctgtgagacaaaaga
aattatccatacaatttaggacttaattaaatctctggacagaactattt
tttctttagatacggtgaatttttaagatgatataaaggaaaaattgaat
ttcaactacattagtttcaaaagaataggtttatagtatctgatttatat
gctatactgaaaacataaccatgtatgctaaaatctattgtgtaaagttt
gtttctcttacttttcaaagttaagccagtttaaagtcatgaaagcacct
cttcacaataaaattatttcattctacattaaagttactcataaaaaatt
catgttgaaattttacctggctaattaagtattgcttctttgctttcgac
aggtctaccatggtttggctagctcag

gaattctttgttcagaaaattaacaaagaactgagaaacaaagtcacctg
ggactgtagtgtgcttatgttagagtagtccagtgaagtgccaatgaatt
actctaatgtattattaacagaaaaaataagtatggataaaatatattaa
agtaaagaatttcaaggaagaatactgaacagctttgaacacataactcc
caacataacataatgcaaacaaaaccaagaagagcaaagtgcactggggc
tccctttcttcctaagatgcacagacacctttcactcttccatgttttaa
aacaagcacaagccacatttgttctcatgttatacaagaaaggttttctt
gggaacaactagcactttgatgctacacctagaactttctatgaggtcta
tggttttgttttttgtagtgggtatgtggaatattaattgttgctgaagc
ctaaaagcaccaggtcaagctcagccatagcaagaaacctgttatagatt
tcttggtgaggagtaatactttgaaactgaaatctagaccattaaacaca
tagatataaacacaaatgcaatcatgagctcatactgatgcttcttatca
aacccaacatcatatactttcccagtttttccccattccccatcttctat
agtgagagcattcatatcaacggtaggaatatgttaaccaataatactgt
tctatggaacactcacagttgtttcagaactaattactccaaatacaata
agacagcaaacatttttagtgaagtgcaagacagctttatgagttttacc
ttctatgtcaagtaaagctgtcctgctatgtataagttacccaatatatt
gttctctttgagtgggtctgtttttattcaggtatattgttgacatatat
actgatttttgtggcttgcctttaatctctgtgatacaccagaagatttg
tatccatgaaatcatcccatatatctaccaatcatgagttacatactcag
acatcattttgcctgtgtggcacattgcagaccattgttctgtaattttc
ttgaatagcacagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7567245_7568442
seq2: B6Ng01-129C03.b_50_1226 (reverse)

seq1  CTGAGCTAGCCAGAACCATGTGATGACACTGTCTGAAAAGCCAAAGAAGG  50
      |||||||||||| ||||||| |  ||| ||||| ||||   ||||||| |
seq2  CTGAGCTAGCCA-AACCATG-GTAGAC-CTGTC-GAAA--GCAAAGAA-G  43

seq1  CAATACTTATATAGCCAGGTAAATATTTTTCAACATGAATTTTTTTATGA  100
      |||||||||  ||||||||||||    |||||||||||| ||||||||||
seq2  CAATACTTAATTAGCCAGGTAAA---ATTTCAACATGAA-TTTTTTATGA  89

seq1  GTACCTTTTAATGTAGAATTGAAAT-ATTTTATTGTTGAGAGGTGCTTTT  149
      ||| | |||||||||||| |||||| ||||||||||  |||||||| |||
seq2  GTAAC-TTTAATGTAGAA-TGAAATAATTTTATTGTGAAGAGGTGC-TTT  136

seq1  CATGACTTTAAACTGGCTTTAACCTTTGAAAAGTTAAGAGAAAACAAAAC  199
      |||||||||||||||||||  | |||||||||| |||||||||   ||||
seq2  CATGACTTTAAACTGGCTT--AACTTTGAAAAG-TAAGAGAAA--CAAAC  181

seq1  TTTACACAATAGATTTTTAGCATACATGGTTATTGTTTTCAGTATAGCAT  249
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTTACACAATAGA-TTTTAGCATACATGGTTA-TGTTTTCAGTATAGCAT  229

seq1  ATAAATCAGATACTATAAACCTATTCTTTTGAAACTAATGTAGTTTGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAAATCAGATACTATAAACCTATTCTTTTGAAACTAATGTAG-TTGAAA  278

seq1  TTCAATTTTTCCTTTATATCATCTTAAAAATTCACCGTATCTAAAGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTTCCTTTATATCATCTTAAAAATTCACCGTATCTAAAGAAAA  328

seq1  AATAGTTCTGTCCAGAGATTTAATTAAGTCCTAAATTGTATGGATAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCTGTCCAGAGATTTAATTAAGTCCTAAATTGTATGGATAATTT  378

seq1  CTTTTGTCTCACAGATCATCCTTACTTAATACTGTACTGAAAAGTGCGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTCACAGATCATCCTTACTTAATACTGTACTGAAAAGTGCGTG  428

seq1  TTTTAATCTCATATGACTTCGGTGAAAATTGCTGCATAATGATGCACTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTCATATGACTTCGGTGAAAATTGCTGCATAATGATGCACTTC  478

seq1  AAATATGAAATTCTCTGGATCATGTGCAAGCAGGACAGGAAGGGCTTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAATTCTCTGGATCATGTGCAAGCAGGACAGGAAGGGCTTGGT  528

seq1  GGCAATTGTCACCATGTAATGCTCCTTTCTCAGACCTTTGCCATATGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGTCACCATGTAATGCTCCTTTCTCAGACCTTTGCCATATGCCA  578

seq1  GAATTGATGACATTTTTCCTCAACTTCATCTTCTAGATTCAGATATCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATGACATTTTTCCTCAACTTCATCTTCTAGATTCAGATATCCAG  628

seq1  AGTTGTGTTTCATAAACATATACACTGAAAACTCACACACTGGTGGTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTTTCATAAACATATACACTGAAAACTCACACACTGGTGGTCAT  678

seq1  TTTCTTCTATCTACTGTACTTTTTTCTTTGTGATTTCAAGGTTTTGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATCTACTGTACTTTTTTCTTTGTGATTTCAAGGTTTTGGAAA  728

seq1  AATAAGTTGCTAAATTTATAAAATAGTTGGGAACATTGAACCTATATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTGCTAAATTTATAAAATAGTTGGGAACATTGAACCTATATTTC  778

seq1  CTTTTATTGTGCCATTAGATACAGACAAATATAGTGTTCTCCCATTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGTGCCATTAGATACAGACAAATATAGTGTTCTCCCATTTTCT  828

seq1  ACTGTCATGTAAGAGTGAGGTTGCCAAGGTGACTGTTAGAATAGTGAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATGTAAGAGTGAGGTTGCCAAGGTGACTGTTAGAATAGTGAATA  878

seq1  TGTTTTTATTAGCGAGTTCACACTGGAAGCCAGATCAATAGTGGCAACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTAGCGAGTTCACACTGGAAGCCAGATCAATAGTGGCAACTT  928

seq1  TTCATGTTGAGAAATGTTCTTCCTCTATTGTTATCTTTCTCTGATCAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTGAGAAATGTTCTTCCTCTATTGTTATCTTTCTCTGATCAGAT  978

seq1  GGACCTCTGCTGAGCACTTTATAAAATTGAAACGACTTACATCACCATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTGCTGAGCACTTTATAAAATTGAAACGACTTACATCACCATTT  1028

seq1  TGTTGGCCTAATATGTAAGGGAAACTATGCGTGCCAGCATTTATTTAGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCTAATATGTAAGGGAAACTATGCGTGCCAGCATTTATTTAGAC  1078

seq1  AAGAGATACCAATGTTTGCATATCATTCTGTGACATCCTTTTAAAAGTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACCAATGTTTGCATATCATTCTGTGACATCCTTTTAAAAGTGC  1128

seq1  CTGTAGTCCTAGGAAGAATCTGCCAGTTGTCTTCCAGATTCATGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCCTAGGAAGAATCTGCCAGTTGTCTTCCAGATTCATGAATTC  1177


seq1: chr1_7422209_7423282
seq2: B6Ng01-129C03.g_69_1133

seq1  GAATTCTTTGTTCAGAAAATTAACAAAGAACTGAGAAACAAAGTCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGAAAATTAACAAAGAACTGAGAAACAAAGTCACCTG  50

seq1  GGACTGTAGTGTGCTTATGTTAGAGTAGTCCAGTGAAGTGCCAATGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAGTGTGCTTATGTTAGAGTAGTCCAGTGAAGTGCCAATGAATT  100

seq1  ACTCTAATGTATTATTAACAGAAAAAATAAGTATGGATAAAATATATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATGTATTATTAACAGAAAAAATAAGTATGGATAAAATATATTAA  150

seq1  AGTAAAGAATTTCAAGGAAGAATACTGAACAGCTTTGAACACATAACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATTTCAAGGAAGAATACTGAACAGCTTTGAACACATAACTCC  200

seq1  CAACATAACATAATGCAAACAAAACCAAGAAGAGCAAAGTGCACTGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAACATAATGCAAACAAAACCAAGAAGAGCAAAGTGCACTGGGGC  250

seq1  TCCCTTTCTTCCTAAGATGCACAGACACCTTTCACTCTTCCATGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTCCTAAGATGCACAGACACCTTTCACTCTTCCATGTTTTAA  300

seq1  AACAAGCACAAGCCACATTTGTTCTCATGTTATACAAGAAAGGTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCACAAGCCACATTTGTTCTCATGTTATACAAGAAAGGTTTTCTT  350

seq1  GGGAACAACTAGCACTTTGATGCTACACCTAGAACTTTCTATGAGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAACTAGCACTTTGATGCTACACCTAGAACTTTCTATGAGGTCTA  400

seq1  TGGTTTTGTTTTTTGTAGTGGGTATGTGGAATATTAATTGTTGCTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTTTTTTGTAGTGGGTATGTGGAATATTAATTGTTGCTGAAGC  450

seq1  CTAAAAGCACCAGGTCAAGCTCAGCCATAGCAAGAAACCTGTTATAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCACCAGGTCAAGCTCAGCCATAGCAAGAAACCTGTTATAGATT  500

seq1  TCTTGGTGAGGAGTAATACTTTGAAACTGAAATCTAGACCATTAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGAGGAGTAATACTTTGAAACTGAAATCTAGACCATTAAACACA  550

seq1  TAGATATAAACACAAATGCAATCATGAGCTCATACTGATGCTTCTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAAACACAAATGCAATCATGAGCTCATACTGATGCTTCTTATCA  600

seq1  AACCCAACATCATATACTTTCCCAGTTTTTCCCCATTCCCCATCTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACATCATATACTTTCCCAGTTTTTCCCCATTCCCCATCTTCTAT  650

seq1  AGTGAGAGCATTCATATCAACGGTAGGAATATGTTAACCAATAATACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGCATTCATATCAACGGTAGGAATATGTTAACCAATAATACTGT  700

seq1  TCTATGGAACACTCACAGTTGTTTCAGAACTAATTACTCCAAATACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAACACTCACAGTTGTTTCAGAACTAATTACTCCAAATACAATA  750

seq1  AGACAGCAAACATTTTTAGTGAAGTGCAAGACAGCTTTATGAGTTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAACATTTTTAGTGAAGTGCAAGACAGCTTTATGAGTTTTACC  800

seq1  TTCTATGTCAAGTAAAGCTGTCCTGCTATGTATAAGTTACCCAAATATAT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTATGTCAAGTAAAGCTGTCCTGCTATGTATAAGTTACCC-AATATAT  849

seq1  TGTTCTCTTTGAGTGGGTCTGTTTTTATTCAGGTATATTGTTGACATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTTGAGTGGGTCTGTTTTTATTCAGGTATATTGTTGACATATA  899

seq1  TACTGATTTTTGTGGCTTGCCTTTAATCTTCTGTGATACA-CAGAAGAAT  949
      |||||||||||||||||||||||||||| ||||||||||| |||||| ||
seq2  TACTGATTTTTGTGGCTTGCCTTTAATC-TCTGTGATACACCAGAAG-AT  947

seq1  TTGTATCCATGAAATCAATCCCATATATCTACCAATCATGAGTTACAATA  999
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TTGTATCCATGAAATC-ATCCCATATATCTACCAATCATGAGTTAC-ATA  995

seq1  CTCAGGACATCATTTTGCCTGTTGTGCACATATGCAGACCATTTGTTCTG  1049
      |||| |||||||||||||||||   |||||| ||||||||| ||||||||
seq2  CTCA-GACATCATTTTGCCTGTGTGGCACAT-TGCAGACCA-TTGTTCTG  1042

seq1  TAAATTTTCTTTGAATAGCACAGAT  1074
      | ||||||| |||||||||||||||
seq2  T-AATTTTC-TTGAATAGCACAGAT  1065


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