BAC Information

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BAC

Clone NameB6Ng01-129D23
Chromosome1 (Build37)
Map Location 77,338,525 - 77,339,599
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneEpha4, LOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129D23.bB6Ng01-129D23.g
ACCDH930884DH930885
length4401,057
definitionDH930884|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D23, 5' end.DH930885|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ccattaaatcaggaacactataaatatgtcttcaacctctcattaattca
gcattataatacactccattaaaaaacaaatgaagtatatgattagaaaa
gaaagataaatatatgataagttataaatattttgatgcttttcaccaaa
aaagtttcagaaactttacagaaaaaccgttaaacccaggaagagattgg
catgcttccagcatatcagcatttgatagcttctgggagaggaagaattg
gtttttattagcgatgtgacccttggtaggtctaccacatgccacagcag
gttttactcccaagactagctgggcaacacaaattggatgcaatgggaaa
agaaaacaaataaagaaaaagaaatctcaaaaaaagtgtgggaaggaatg
agctaatggagagggtggctgtggagtgttgtgggggagg

gaattcagctgtagtttttcactttgtgaggaatatgccttcattgcttt
tctccccatcctaattatagctgttgaatattgaactcatgcagccaact
gtacagtatttgtgctaaagggaactccgagggaagaaggctttgaggga
gatggctaagaaaatgaaggcactccgaatttcaagcgaaaattaggcca
agaccacttctcaatttggcctcgtagctcttacccacagtgggaaattc
ttttacctaattcatgcactacattttccttttaatttgatagtgtaagt
ctgaaggcacctctagttcctctcagctttgtttcttactatattccagg
gaaattaacagcaattttatctaacagaataagtaatgcccgtgaacttc
taccggctatgactttatttgaattacatctttgacccgattcccagcag
agttttaaacattaaggtgtcttaagtgtgagctgcctctaatttagcat
aatttctttgtgggagatctataaaacaggggcactcagcctgaatttaa
tctacacatatgttttgattgctgtttcaaacctttaggtgaatgtttta
cgttctgtattttttttttaataggaaagtgatttttgaatgttcttaat
gcttctcatattaacaggtatggggcaatatctccttaatgattcgcaat
tgaaactaagcatcttcttgcttacctgttatcttttatacaagggattc
atgccttcatcagaggtcccagggagcactggtaccctcttttggccaca
tgaggatgcagtaccttgccagcagactgtcacagggaagcaggctctca
cctgaacttgaatctgaccaagtcaaatttgaaacccttagtcacaatta
cttgctgtagcggctcaactgaattaagcagttctcttggagtctcacag
agtttagataccagagcttaaatagaatcgaaagtgtgttcagccctaga
gagagagcagagatatgatttatggggattcatagcaacggtctattctc
aacgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77338525_77339599
seq2: B6Ng01-129D23.g_67_1123 (reverse)

seq1  TGTCGTTTGAG-ATAGACCGTTGCTATGAATCCCCATAAATCATTATCCT  49
      ||||| ||||| ||||||||||||||||||||||||||||||| ||||  
seq2  TGTCG-TTGAGAATAGACCGTTGCTATGAATCCCCATAAATCA-TATC--  46

seq1  CCTGCCTCTTCCTCTCTAGTGCTGGAACACACCTTTTCGGTTTCTATTTT  99
       ||| ||||  |||||||| ||| ||||||||  |||| | |||||||| 
seq2  TCTG-CTCT--CTCTCTAGGGCT-GAACACAC--TTTC-GATTCTATTT-  88

seq1  TAAAGCTCTGGTAATCTAAACTCTGTGAAGAACTCCAAGAGAACTGCTTA  149
        |||||||||| |||||||||||||||   |||||||||||||||||||
seq2  --AAGCTCTGGT-ATCTAAACTCTGTGA--GACTCCAAGAGAACTGCTTA  133

seq1  ATTCAGTTTGAGCCGCTACAGCAAAGTAATTGTGACTAAGGGTTTCAAAT  199
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCAG-TTGAGCCGCTACAGC-AAGTAATTGTGACTAAGGGTTTCAAAT  181

seq1  TTGACTTGGTCAGATTCAAGTTCAGGTGAGAGCCTGCTTCCCTGTGACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGGTCAGATTCAAGTTCAGGTGAGAGCCTGCTTCCCTGTGACAG  231

seq1  TCTGCTGGCAAGGTACTGCATCCTCATGTGGCCAAAAGAGGGTACCAGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGCAAGGTACTGCATCCTCATGTGGCCAAAAGAGGGTACCAGTG  281

seq1  CTCCCTGGGACCTCTGATGAAGGCATGAATCCCTTGTATAAAAGATAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGACCTCTGATGAAGGCATGAATCCCTTGTATAAAAGATAACA  331

seq1  GGTAAGCAAGAAGATGCTTAGTTTCAATTGCGAATCATTAAGGAGATATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCAAGAAGATGCTTAGTTTCAATTGCGAATCATTAAGGAGATATT  381

seq1  GCCCCATACCTGTTAATATGGGAAGCATTAAGAACATTCAAAAATCACTT  449
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCCCATACCTGTTAATATGAGAAGCATTAAGAACATTCAAAAATCACTT  431

seq1  TCCTATTAAAAAAAAAATACAGAACGTAAAACATTCACCTAAAGGTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAAAAAAAAAATACAGAACGTAAAACATTCACCTAAAGGTTTGA  481

seq1  AACAGCAATCAAAACATATGTGTAGATTAAATTCAGGCTGAGTGCCCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATCAAAACATATGTGTAGATTAAATTCAGGCTGAGTGCCCCTG  531

seq1  TTTTATAGATCTCCCACAAAGAAATTATGCTAAATTAGAGGCAGCTCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGATCTCCCACAAAGAAATTATGCTAAATTAGAGGCAGCTCACA  581

seq1  CTTAAGACACCTTAATGTTTAAAACTCTGCTGGGAATCGGGTCAAAGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACACCTTAATGTTTAAAACTCTGCTGGGAATCGGGTCAAAGATG  631

seq1  TAATTCAAATAAAGTCATAGCCGGTAGAAGTTCACGGGCATTACTTATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATAAAGTCATAGCCGGTAGAAGTTCACGGGCATTACTTATTC  681

seq1  TGTTAGATAAAATTGCTGTTAATTTCCCTGGAATATAGTAAGAAACAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATAAAATTGCTGTTAATTTCCCTGGAATATAGTAAGAAACAAAG  731

seq1  CTGAGAGGAACTAGAGGTGCCTTCAGACTTACACTATCAAATTAAAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAACTAGAGGTGCCTTCAGACTTACACTATCAAATTAAAAGGA  781

seq1  AAATGTAGTGCATGAATTAGGTAAAAGAATTTCCCACTGTGGGTAAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTGCATGAATTAGGTAAAAGAATTTCCCACTGTGGGTAAGAGC  831

seq1  TACGAGGCCAAATTGAGAAGTGGTCTTGGCCTAATTTTCGCTTGAAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGGCCAAATTGAGAAGTGGTCTTGGCCTAATTTTCGCTTGAAATTC  881

seq1  GGAGTGCCTTCATTTTCTTAGCCATCTCCCTCAAAGCCTTCTTCCCTCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCCTTCATTTTCTTAGCCATCTCCCTCAAAGCCTTCTTCCCTCGG  931

seq1  AGTTCCCTTTAGCACAAATACTGTACAGTTGGCTGCATGAGTTCAATATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTTTAGCACAAATACTGTACAGTTGGCTGCATGAGTTCAATATT  981

seq1  CAACAGCTATAATTAGGATGGGGAGAAAAGCAATGAAGGCATATTCCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTATAATTAGGATGGGGAGAAAAGCAATGAAGGCATATTCCTCA  1031

seq1  CAAAGTGAAAAACTACAGCTGAATTC  1075
      ||||||||||||||||||||||||||
seq2  CAAAGTGAAAAACTACAGCTGAATTC  1057


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