BAC Information

Click to search

BAC

Clone NameB6Ng01-129N22
Chromosome1 (Build37)
Map Location 80,887,480 - 80,988,373
singlet/doubletdoublet
Overlap geneLOC665092
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129N22.bB6Ng01-129N22.g
ACCDH931342DH931343
length1,063881
definitionDH931342|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N22, 5' end.DH931343|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,887,480 - 80,888,557)(80,987,492 - 80,988,373)
sequence
gaattcaaagtatagatataagttaaaccttgttaacatttaaaaatatt
taagaggaaataacaatatgaaatgggtgattcatggattctgggtattg
gttaatcagttttttcaaggatgaagagcctaaccttgcttcagtagatg
gtttgatgcccatgcaaatacaagcaaccttaactagactcaatgggttt
aaaaagaacccattgagtaaatagaaatatttactcaattatttatttaa
taaatagaaagttgaaagggaaaacttctagggaaagggaaagaattaga
acagaggcagtggagggagatttgatggaaagacattacaagcaagtatg
acaatgtcaaacactaaggcaacagaacaggaatcgtaaatgggctacat
ttaaaatctctatttgaagatggctcattatttaccattctgtcacaatg
agaccaattatgctgaacaatcagtgtctgataataaaccattctgtcgg
tgttgtgtctatagtataggttaatggaaaagaaaattataaattatttt
acaatgtgtattttagttataatatttcttttattggctattttacttat
ttacatttcaaatattgtcccactttccagtctccccttctcaaaccctc
catcccattccccttcccctttgcctcatagtcaggtacatttttcacat
tcatattagtattaacaacaaatttagttgttttcactgccctgcatccc
agccccttctacctctcaacaagtctctctcatcccacagccctctgaat
ttaaaggagaccttcttttctgcgaatgggtgggaggtggtttaacagaa
caaagaaaacaagtaaaaatctagagcccattgtggtggggacaatgtta
atttttcacacaatcttctaatggcaatgaccaataaatcgggttaatta
aatgtctatcagtagaatgctgcccatgactaccattttctctaggtcac
cactcctaatacttgcagggaagagattctactcaataccaatggctgac
aaagtgattctat
gaattcacggagaaaaagataattggtgtgatggtgcagctttgtaatcc
aagcaatggagatgggaagtttgttggagctgcctggacagctagcctaa
ttgaattggagagcctcaagcctcagtgaagagtacaataaaaaccaaca
aatgaagaaagctccccaccaaaacaaggtagatagcttcaagtctaccc
acagttgacctttgactcctacacacatgctctaacaaatgtgaggacat
aaacagattgccattgtgtcttgctatgataagccaagaaaaaacctctg
ggcctgacatagagatctctgtacaatgcacttttattctgatctcagga
tgccatctcagccccctccctcacaactcagcttcattttctagaaaccc
acatcctcccatcaatgttctatgtataggatgtatagggtgtataggat
gagaatctgagaagaaaatttctgtgcatataactataactgttttagta
ttgtctaacttagaggatttatcctttttctgttatagaatttcctacaa
cacattctatttttaaagatttattttatttttaattgtatgtttgtgta
tggctatgtgcccatgaggaatccgaggcatcaaaatctccctggatcct
gggttacaggcagttgtaagttacccaacttgtgtgcgaggtaaggaact
gaggtcctctgcaagagtgggaagtgctcttaacctctaagctgtctcta
cagtccaatacttggtctaaaggcgttccccatttggggttcaaagctta
ggtcaggcattagatcttctccaagctcctcagaacagaagatgacctat
cacggtgcgtcataagacctgtctaagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80887480_80888557
seq2: B6Ng01-129N22.b_49_1111

seq1  GAATTCAAAGTATAGATATAAGTTAAACCTTGTTAACATTTAAAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTATAGATATAAGTTAAACCTTGTTAACATTTAAAAATATT  50

seq1  TAAGAGGAAATAACAATATGAAATGGGTGATTCATGGATTCTGGGTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAAATAACAATATGAAATGGGTGATTCATGGATTCTGGGTATTG  100

seq1  GTTAATCAGTTTTTTCAAGGATGAAGAGCCTAACCTTGCTTCAGTAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCAGTTTTTTCAAGGATGAAGAGCCTAACCTTGCTTCAGTAGATG  150

seq1  GTTTGATGCCCATGCAAATACAAGCAACCTTAACTAGACTCAATGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGCCCATGCAAATACAAGCAACCTTAACTAGACTCAATGGGTTT  200

seq1  AAAAAGAACCCATTGAGTAAATAGAAATATTTACTCAATTATTTATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACCCATTGAGTAAATAGAAATATTTACTCAATTATTTATTTAA  250

seq1  TAAATAGAAAGTTGAAAGGGAAAACTTCTAGGGAAAGGGAAAGAATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAGTTGAAAGGGAAAACTTCTAGGGAAAGGGAAAGAATTAGA  300

seq1  ACAGAGGCAGTGGAGGGAGATTTGATGGAAAGACATTACAAGCAAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAGTGGAGGGAGATTTGATGGAAAGACATTACAAGCAAGTATG  350

seq1  ACAATGTCAAACACTAAGGCAACAGAACAGGAATCGTAAATGGGCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCAAACACTAAGGCAACAGAACAGGAATCGTAAATGGGCTACAT  400

seq1  TTAAAATCTCTATTTGAAGATGGCTCATTATTTACCATTCTGTCACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTCTATTTGAAGATGGCTCATTATTTACCATTCTGTCACAATG  450

seq1  AGACCAATTATGCTGAACAATCAGTGTCTGATAATAAACCATTCTGTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATTATGCTGAACAATCAGTGTCTGATAATAAACCATTCTGTCGG  500

seq1  TGTTGTGTCTATAGTATAGGTTAATGGAAAAGAAAATTATAAATTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCTATAGTATAGGTTAATGGAAAAGAAAATTATAAATTATTTT  550

seq1  ACAATGTGTATTTTAGTTATAATATTTCTTTTATTGGCTATTTTACTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGTATTTTAGTTATAATATTTCTTTTATTGGCTATTTTACTTAT  600

seq1  TTACATTTCAAATATTGTCCCACTTTCCAGTCTCCCCTTCTCAAACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCAAATATTGTCCCACTTTCCAGTCTCCCCTTCTCAAACCCTC  650

seq1  CATCCCATTCCCCTTCCCCTTTGCCTCATAGTCAGGTACATTTTTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATTCCCCTTCCCCTTTGCCTCATAGTCAGGTACATTTTTCACAT  700

seq1  TCATATTAGTATTAACAACAAATTTAGTTGTTTTCACTGCCCTGCATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAGTATTAACAACAAATTTAGTTGTTTTCACTGCCCTGCATCCC  750

seq1  AGCCCCTTCTACCTCTCAACAAGTCTCTCTCATCCCACAGCCCTCTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTCTACCTCTCAACAAGTCTCTCTCATCCCACAGCCCTCTGAAT  800

seq1  TT-AAGGAGACCTTCTTTTCTGCGAATGGGTGGGAGGTGGTTTAACAGAA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAGACCTTCTTTTCTGCGAATGGGTGGGAGGTGGTTTAACAGAA  850

seq1  CAAAGAAAACAAGTAAAAAATCTAGAGCCCATTGTGGTGGGGACAATGTT  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAACAAGT-AAAAATCTAGAGCCCATTGTGGTGGGGACAATGTT  899

seq1  AATTTTTCACACAATCTTCTTAATGGCAATGAACCAATAAATCGGGTTAA  949
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  AATTTTTCACACAATCTTC-TAATGGCAATG-ACCAATAAATCGGGTTAA  947

seq1  TTAAATGTCTATCAGTAGAAATGCTGCCCATGACTTAACCATTTTCTCTA  999
      |||||||||||||||||| ||||||||||||||||  |||||||||||||
seq2  TTAAATGTCTATCAGTAG-AATGCTGCCCATGACT--ACCATTTTCTCTA  994

seq1  AGTTCCACCACTCCTTAATACTTGCAGGGGACAGAGATTCTACTCAAATA  1049
       ||  ||||||||| ||||||||||||||   ||||||||||||| ||||
seq2  GGT--CACCACTCC-TAATACTTGCAGGG--AAGAGATTCTACTC-AATA  1038

seq1  ACACAATGGCTGACAAAAGTGATTTCTAT  1078
         ||||||||||| ||||||| ||||||
seq2  --CCAATGGCTGAC-AAAGTGA-TTCTAT  1063

seq1: chr1_80987492_80988373
seq2: B6Ng01-129N22.g_70_950 (reverse)

seq1  TTTGCTTAGACAGGTCTTATGACGCCACGTGATAGGTCATTCTTCTGTTC  50
      |||||||||||||||||||||||||  |||||||||||| ||||||||||
seq2  TTTGCTTAGACAGGTCTTATGACGCACCGTGATAGGTCA-TCTTCTGTTC  49

seq1  TGAGGAGCTTGGAGAAGATCTAATGCCTGACCTAAGCTTTGAACCCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCTTGGAGAAGATCTAATGCCTGACCTAAGCTTTGAACCCCAAA  99

seq1  TGGGGAACGCCTTTTAGACCAAGTATTGGACTGTAGAGACAGCTTAGAGG  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACGCC-TTTAGACCAAGTATTGGACTGTAGAGACAGCTTAGAGG  148

seq1  TTAAGAGCACTTCCCACTCTTGCAGAGGACCTCAGTTCCTTACCTCGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCACTTCCCACTCTTGCAGAGGACCTCAGTTCCTTACCTCGCAC  198

seq1  ACAAGTTGGGTAACTTACAACTGCCTGTAACCCAGGATCCAGGGAGA-TT  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAAGTTGGGTAACTTACAACTGCCTGTAACCCAGGATCCAGGGAGATTT  248

seq1  TGATGCCTCGGATTCCTCATGGGCACATAGCCATACACAAACATACAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTCGGATTCCTCATGGGCACATAGCCATACACAAACATACAATT  298

seq1  AAAAATAAAATAAATCTTTAAAAATAGAATGTGTTGTAGGAAATTCTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAAATCTTTAAAAATAGAATGTGTTGTAGGAAATTCTATA  348

seq1  ACAGAAAAAGGATAAATCCTCTAAGTTAGACAATACTAAAACAGTTATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGGATAAATCCTCTAAGTTAGACAATACTAAAACAGTTATAG  398

seq1  TTATATGCACAGAAATTTTCTTCTCAGATTCTCATCCTATACACCCTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCACAGAAATTTTCTTCTCAGATTCTCATCCTATACACCCTATA  448

seq1  CATCCTATACATAGAACATTGATGGGAGGATGTGGGTTTCTAGAAAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATACATAGAACATTGATGGGAGGATGTGGGTTTCTAGAAAATGA  498

seq1  AGCTGAGTTGTGAGGGAGGGGGCTGAGATGGCATCCTGAGATCAGAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTTGTGAGGGAGGGGGCTGAGATGGCATCCTGAGATCAGAATAA  548

seq1  AAGTGCATTGTACAGAGATCTCTATGTCAGGCCCAGAGGTTTTTTCTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATTGTACAGAGATCTCTATGTCAGGCCCAGAGGTTTTTTCTTGG  598

seq1  CTTATCATAGCAAGACACAATGGCAATCTGTTTATGTCCTCACATTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATAGCAAGACACAATGGCAATCTGTTTATGTCCTCACATTTGTT  648

seq1  AGAGCATGTGTGTAGGAGTCAAAGGTCAACTGTGGGTAGACTTGAAGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGTGTGTAGGAGTCAAAGGTCAACTGTGGGTAGACTTGAAGCTA  698

seq1  TCTACCTTGTTTTGGTGGGGAGCTTTCTTCATTTGTTGGTTTTTATTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTGTTTTGGTGGGGAGCTTTCTTCATTTGTTGGTTTTTATTGTA  748

seq1  CTCTTCACTGAGGCTTGAGGCTCTCCAATTCAATTAGGCTAGCTGTCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACTGAGGCTTGAGGCTCTCCAATTCAATTAGGCTAGCTGTCCAG  798

seq1  GCAGCTCCAACAAACTTCCCATCTCCATTGCTTGGATTACAAAGCTGCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCCAACAAACTTCCCATCTCCATTGCTTGGATTACAAAGCTGCAC  848

seq1  CATCACACCAATTATCTTTTTCTCCGTGAATTC  882
      |||||||||||||||||||||||||||||||||
seq2  CATCACACCAATTATCTTTTTCTCCGTGAATTC  881