BAC Information

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BAC

Clone NameB6Ng01-130F19
Chromosome1 (Build37)
Map Location 117,158,547 - 117,304,205
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130F19.bB6Ng01-130F19.g
ACCDH931695DH931696
length1,139734
definitionDH931695|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F19, 5' end.DH931696|Mus musculus domesticus DNA, BAC clone: B6Ng01-130F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,303,065 - 117,304,205)(117,158,547 - 117,159,280)
sequence
gaattctataagtacattggaatctcacatctatatggctgcatctaaat
ggaccaaattcatgtcttcatacctgcacaacaaaggttttatcctttga
catatctctctgaacctctgtcatatttccttacctatagaaagataatg
aagaattgctgacattatagctgcttattaagatttgaaaatttgaaaag
aaatcatatacgaatatatatttttgcttgtctacaagataggtgaaatt
tcctagctacaggtcatgaatgttgatgatagtaattacattcataaata
gaagatatctgactacttatagtattagaaaacagaatcactgaactgag
tagtttgggtctgtgatcattcatgcttaatttactgatggtcttactgt
gatgtttcataagatcagcaaaatatttgctgttagatattgactactca
acattgcctttttcatattcaaatgagattttattggatttcctgaaagc
tgagtttattaaaattgaccagtaaatctagaatcatgttatgttctatt
ttgcctgggactgttctttttctcattttatattatgtgtacttgctatt
attttatcattttgctctcaaaagtgacatgctttcaccaccctttgaga
agattcatgatctagtaaaggagtttagtatataagatactaatttattc
ttacaaactgaagtctatagaactgctaatatttttgtatatatgtttgt
gtgttctctgcacaggtatacatacccatgaaggagtatgaaagcaagaa
ttgaatgttgaattgggtataatgaccaattgctctccatctttcttttt
atacagggcattaccttgaacttgttgcttactaattgactagaatgtct
ggtcagtgagcaacagagatattcctctactctggttcaaacatttggtt
attttcaagttgcatcatgcctgtcttttacaaggcttctgaactacagt
ggtgaaaatgtaactgagaagcctttcttaaagaacttttactttgttga
cttcattccatggtataccaggaccagggaaatatttcaagataaaagta
aattaatattagccagggtcagggatacagaggatgatg
gaattctttgttttctattattgtatatgtgggtatgaattatgtatgca
ttaactcaaaagtacttctggagtaattttcttcacttcacctgagtgga
aactgaggtctgtgtaggaagtgttttttttttttttctttctttatttt
cctttcatgagccatttccccatcctacaataagcttacttgagccggtg
gtggtggtgcccacctttaattccagcacttaggaggcagaagcaggtag
atttctgagccaacctggtctacagaatgaagccaggacagccagggata
tacagagaaaccctgtctcgaaaaacaacaacaacaacaacaaaacaaca
acaacaataacaacaacaacaaaacaataaacttacttgagaaagtttta
ggctctccaataatagctgagttgtctttgatgcagtcacaggatgtgtt
tccatatccccaatttaggcgtgtgatgggattttatctttttattctct
ttgctttttgtgaactcaatagaacatatagaaaccagggctgagaatgg
gttgattgcctgtacaaatgtataaacgaatttcaacattccccaagggg
aaaaatgttttccttccctttttggtttccacaaacaacaaagaagaatc
ttagatccccatctctcatatatttgtaagatatatatatatatatatat
atatatatatatatatatatatatatggaattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117303065_117304205
seq2: B6Ng01-130F19.b_49_1187 (reverse)

seq1  CATCAT--TCTGTAT-CCTGACACTGGCTAATATTTAATTTACTTTTTAT  47
      ||||||  ||||||| |||||| |||||||||| ||||||||| ||||||
seq2  CATCATCCTCTGTATCCCTGACCCTGGCTAATA-TTAATTTAC-TTTTAT  48

seq1  CTGTGAAATATTT-CCTGTTCTGTGTATTACATGGTAATGAAGTCAAACA  96
      || |||||||||| |||| ||   ||||  ||||| ||||||||| ||||
seq2  CT-TGAAATATTTCCCTGGTCCTGGTATACCATGG-AATGAAGTC-AACA  95

seq1  AAGT-AAAGTTCTTTAGGAAAGGCTTCTTCAGTTACATTTTCACCACTGT  145
      |||| ||||||||||| |||||||||| ||||||||||||||||||||||
seq2  AAGTAAAAGTTCTTTAAGAAAGGCTTC-TCAGTTACATTTTCACCACTGT  144

seq1  AGTTCAGAAGCCTTGTAAAAAGACAGGCATGATGCAACTTGAAAATAACC  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTCAGAAGCCTTGT-AAAAGACAGGCATGATGCAACTTGAAAATAACC  193

seq1  AAATGTTTGAACCAGAGTAGAGGAATATCTCTGTTGCTCACTGACCAGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAACCAGAGTAGAGGAATATCTCTGTTGCTCACTGACCAGAC  243

seq1  ATTCTAGTCAATTAGTAAGCAACAAGTTCAAGGTAATGCCCTGTATAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTCAATTAGTAAGCAACAAGTTCAAGGTAATGCCCTGTATAAAA  293

seq1  AGAAAGATGGAGAGCAATTGGTCATTATACCCAATTCAACATTCAATTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGGAGAGCAATTGGTCATTATACCCAATTCAACATTCAATTCT  343

seq1  TGCTTTCATACTCCTTCATGGGTATGTATACCTGTGCAGAGAACACACAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATACTCCTTCATGGGTATGTATACCTGTGCAGAGAACACACAA  393

seq1  ACATATATACAAAAATATTAGCAGTTCTATAGACTTCAGTTTGTAAGAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACAAAAATATTAGCAGTTCTATAGACTTCAGTTTGTAAGAAT  443

seq1  AAATTAGTATCTTATATACTAAACTCCTTTACTAGATCATGAATCTTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTATCTTATATACTAAACTCCTTTACTAGATCATGAATCTTCTC  493

seq1  AAAGGGTGGTGAAAGCATGTCACTTTTGAGAGCAAAATGATAAAATAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGGTGAAAGCATGTCACTTTTGAGAGCAAAATGATAAAATAATA  543

seq1  GCAAGTACACATAATATAAAATGAGAAAAAGAACAGTCCCAGGCAAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACACATAATATAAAATGAGAAAAAGAACAGTCCCAGGCAAAATA  593

seq1  GAACATAACATGATTCTAGATTTACTGGTCAATTTTAATAAACTCAGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAACATGATTCTAGATTTACTGGTCAATTTTAATAAACTCAGCTT  643

seq1  TCAGGAAATCCAATAAAATCTCATTTGAATATGAAAAAGGCAATGTTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATCCAATAAAATCTCATTTGAATATGAAAAAGGCAATGTTGAG  693

seq1  TAGTCAATATCTAACAGCAAATATTTTGCTGATCTTATGAAACATCACAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATATCTAACAGCAAATATTTTGCTGATCTTATGAAACATCACAG  743

seq1  TAAGACCATCAGTAAATTAAGCATGAATGATCACAGACCCAAACTACTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCATCAGTAAATTAAGCATGAATGATCACAGACCCAAACTACTCA  793

seq1  GTTCAGTGATTCTGTTTTCTAATACTATAAGTAGTCAGATATCTTCTATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGATTCTGTTTTCTAATACTATAAGTAGTCAGATATCTTCTATT  843

seq1  TATGAATGTAATTACTATCATCAACATTCATGACCTGTAGCTAGGAAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTAATTACTATCATCAACATTCATGACCTGTAGCTAGGAAATT  893

seq1  TCACCTATCTTGTAGACAAGCAAAAATATATATTCGTATATGATTTCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATCTTGTAGACAAGCAAAAATATATATTCGTATATGATTTCTTT  943

seq1  TCAAATTTTCAAATCTTAATAAGCAGCTATAATGTCAGCAATTCTTCATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTCAAATCTTAATAAGCAGCTATAATGTCAGCAATTCTTCATT  993

seq1  ATCTTTCTATAGGTAAGGAAATATGACAGAGGTTCAGAGAGATATGTCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTATAGGTAAGGAAATATGACAGAGGTTCAGAGAGATATGTCAA  1043

seq1  AGGATAAAACCTTTGTTGTGCAGGTATGAAGACATGAATTTGGTCCATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAACCTTTGTTGTGCAGGTATGAAGACATGAATTTGGTCCATTT  1093

seq1  AGATGCAGCCATATAGATGTGAGATTCCAATGTACTTATAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGCCATATAGATGTGAGATTCCAATGTACTTATAGAATTC  1139

seq1: chr1_117158547_117159280
seq2: B6Ng01-130F19.g_70_803

seq1  GAATTCTTTGTTTTCTATTATTGTATATGTGGGTATGAATTATGTATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTTCTATTATTGTATATGTGGGTATGAATTATGTATGCA  50

seq1  TTAACTCAAAAGTACTTCTGGAGTAATTTTCTTCACTTCACCTGAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCAAAAGTACTTCTGGAGTAATTTTCTTCACTTCACCTGAGTGGA  100

seq1  AACTGAGGTCTGTGTAGGAAGTGTTTTTTTTTTTTTTCTTTCTTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGTCTGTGTAGGAAGTGTTTTTTTTTTTTTTCTTTCTTTATTTT  150

seq1  CCTTTCATGAGCCATTTCCCCATCCTACAATAAGCTTACTTGAGCCGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGAGCCATTTCCCCATCCTACAATAAGCTTACTTGAGCCGGTG  200

seq1  GTGGTGGTGCCCACCTTTAATTCCAGCACTTAGGAGGCAGAAGCAGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCCCACCTTTAATTCCAGCACTTAGGAGGCAGAAGCAGGTAG  250

seq1  ATTTCTGAGCCAACCTGGTCTACAGAATGAAGCCAGGACAGCCAGGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGCCAACCTGGTCTACAGAATGAAGCCAGGACAGCCAGGGATA  300

seq1  TACAGAGAAACCCTGTCTCGAAAAACAACAACAACAACAACAAAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCTGTCTCGAAAAACAACAACAACAACAACAAAACAACA  350

seq1  ACAACAATAACAACAACAACAAAACAATAAACTTACTTGAGAAAGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATAACAACAACAACAAAACAATAAACTTACTTGAGAAAGTTTTA  400

seq1  GGCTCTCCAATAATAGCTGAGTTGTCTTTGATGCAGTCACAGGATGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAATAATAGCTGAGTTGTCTTTGATGCAGTCACAGGATGTGTT  450

seq1  TCCATATCCCCAATTTAGGCGTGTGATGGGATTTTATCTTTTTATTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCCCCAATTTAGGCGTGTGATGGGATTTTATCTTTTTATTCTCT  500

seq1  TTGCTTTTTGTGAACTCAATAGAACATATAGAAACCAGGGCTGAGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGTGAACTCAATAGAACATATAGAAACCAGGGCTGAGAATGG  550

seq1  GTTGATTGCCTGTACAAATGTATAAACGAATTTCAACATTCCCCAAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGCCTGTACAAATGTATAAACGAATTTCAACATTCCCCAAGGGG  600

seq1  AAAAATGTTTTCCTTCCCTTTTTGGTTTCCACAAACAACAAAGAAGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTTTCCTTCCCTTTTTGGTTTCCACAAACAACAAAGAAGAATC  650

seq1  TTAGATCCCCATCTCTCATATATTTGTAAGATATATATATATATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCCCATCTCTCATATATTTGTAAGATATATATATATATATATAT  700

seq1  ATATATATATATATATATATATATATGGTATTCC  734
      |||||||||||||||||||||||||||| |||||
seq2  ATATATATATATATATATATATATATGGAATTCC  734