BAC Information

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BAC

Clone NameB6Ng01-130L21
Chromosome2 (Build37)1 (Build37)
Map Location 140,736,996 - 140,738,151157,228,548 - 157,229,435
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130L21.bB6Ng01-130L21.g
ACCDH931978DH931979
length1,1811,133
definitionDH931978|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L21, 5' end.DH931979|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,736,996 - 140,738,151)(157,228,548 - 157,229,435)
sequence
gaattctttggggaccctgtggggtgggggtcctctataccatgcattct
gggttagggtgggaggtggaggtcagagcagccgcttacaccaagtgttc
tcatcttacaccaaaggaattggtattcccttttgtctagtttcctttcc
agtttaatgattataaggggtgattgctttcaactctgacccaagcaact
ccttgcacagttgaaaagctaacactataatcctgaagcttgcacttaaa
taaagttaacatagtaatcaccttttgttggtaaacagttgtgtttgatg
tatagactatatgttttcgaacgtcagaaatgtcttccctttttatttat
ttaacttagattattgagacagagtctcacgctatgttccaggttagcct
agaactcacaatgtagcccagccccacctggaactcatgggccctgatat
gcttcattgtcctagctgctgagattacaagtgtgtgtgcatctagcaaa
ggatccaggcttatataagaggcctctcgtaagagctgctttgattctgt
gggaagatcaaaaccagtgaggtggcagcagggcttagcggtcccggtca
tctccttcccttgtctttaattgcccacgaagaacagcagttctactaca
tttgtctatcaaattaaagcctgggccaagatttgcacatttggagcctc
tgcttaagtgggacaagtctctctctctctctgtgtgtcactctgaggaa
agagtcacgacatccttccttttctcttatgaaaccaatcgtgggcttga
acaatctgaattgagaataagagtgctgtttctgcttcctgatgcacacc
ccccccccccaacagtcacctgcctgcttaaagacagttcattatttcac
aatgtgaagaccacgtgctagttgtgtgcctgaatttatatgggttatgt
cactagaaaacaattttctttctgacattttctgtatatttatataattg
cagcattttagcactgttcagcagaaagattaaatacaaggttcaggtaa
tttattgcattgaaatggaaacatttaccttgattttcttatgagtccca
cccaccctgtgggggaactttaattttaaattaactttgtgcccagctta
tttgcccaattaaatgagatgtatgataata
gaattctttccccaatgttaattgataagcttttggattttaatgagcaa
acaataatacttaattgcttttctgttaaagtcctatgacttataccgac
tgctggaattttgagtcttttgttccccccatgcggaatctgagataaaa
gtgttgccggtggtggaatcctcctctaagattccttgactgctttctaa
ggaaaatgacttgtacatggtacgctatcattatggggatgatggaaatg
aacatgtaacctttttccagtataaatatggaataaggataaataagaca
taacctgaattctacttcatgactcagagtatcaatcagaactttatgtc
ctttctaacagaacgtagtgaaagattttttttaaatctttaaagaaata
atagatggtctcaatttctaattcttagtcatttatttctttatagctct
caaagttgctagaaataatctgagcattccattaccactccatggtttaa
tcttctcatacaacaaattcatcaacagcaaaaggatgtttgaaaacata
atgacaaaataacaccaaccaaaaccagaacagcttctctttgtagctac
cagcttaaaaggtagcagattaatacaactttcttttataaatgccaaag
attttattttttaggtcataaaactatgaaataatttccagagataataa
gacaaccctaacaaaaagggaaatggagactatgagactagattataaac
accatgaaaagtaatataccatgaatgtacacttgataataaccctacac
atgcagaaactacttcaagaattttagaaatgcactccaatcttcagaag
aaaaaagggctcacatctgttcaaaacaacaaagatctagggacagaggt
gagacacaagaaaatgcctgaagtggactctgttcattcaagcagatatc
aaactgaattatttacagcacactttttatcttcataccagtcagagctc
aatcctaaggggcttagtgaaactgtaacacattctgctaatcaaaacaa
accaatcgaagtgaatgtttccaacgaaattcatgaataagaactgggaa
gaaagtggtgagaataaaggaaaaaagggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140736996_140738151
seq2: B6Ng01-130L21.b_75_1225 (reverse)

seq1  TATTATTCATTCATCTCATTTTTAAATTTGGCAAATAAGCTTGTGCACAA  50
      ||||| |||| ||||||||||   |||| ||||||||||| || ||||||
seq2  TATTA-TCATACATCTCATTT---AATTGGGCAAATAAGC-TGGGCACAA  45

seq1  ATGTAATTTTAAAAATTAAATGTTCTCCACA-GGTGGGTGGACTTCATAA  99
      |  ||||||  |||||||||  | | ||||| |||||||||   ||||||
seq2  AGTTAATTT--AAAATTAAAGTTCCCCCACAGGGTGGGTGGGACTCATAA  93

seq1  GAAAATC-ATGTTAATGTCT-CAATTCAATGCAATAAAATTACCTGAA-C  146
      ||||||| | || ||||| | || ||||||||||| |||||||||||| |
seq2  GAAAATCAAGGTAAATGTTTCCATTTCAATGCAAT-AAATTACCTGAACC  142

seq1  TTGTATTT-ATCTTTCTGCTGAACAGTGCTTATAATGCTGCAATTATATA  195
      |||||||| |||||||||||||||||||| || |||||||||||||||||
seq2  TTGTATTTAATCTTTCTGCTGAACAGTGC-TAAAATGCTGCAATTATATA  191

seq1  AATATACAGAAATTGTCAGAAAGGAAATTGTTTTCTAGTGACAT-ACCCA  244
      |||||||||||| |||||||||| |||||||||||||||||||| |||||
seq2  AATATACAGAAAATGTCAGAAAGAAAATTGTTTTCTAGTGACATAACCCA  241

seq1  TATAAATTTCAGGCACACAACTAGCACGTGGTCTTCACATTGTGAAATAA  294
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAA-TTCAGGCACACAACTAGCACGTGGTCTTCACATTGTGAAATAA  290

seq1  TGAACTGTCTTTTAAGCAGGCAGGTGACTGTTGGGGGGGGGGGGTGTGCA  344
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTC-TTTAAGCAGGCAGGTGACTGTTGGGGGGGGGGGGTGTGCA  339

seq1  TCAGGAAGCAGAAACAGCACTCTTATTCTCAATTCAGATTGTTCAAGCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCAGAAACAGCACTCTTATTCTCAATTCAGATTGTTCAAGCCC  389

seq1  ACGATTGGTTTCATAAGAGAAAAGGAAGGATGTCGTGACTCTTTCCTCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGGTTTCATAAGAGAAAAGGAAGGATGTCGTGACTCTTTCCTCAG  439

seq1  AGTGACACACAGAGAGAGAGAGAGACTTGTCCCACTTGAGCAGAGGCTCC  494
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGACACACAGAGAGAGAGAGAGACTTGTCCCACTTAAGCAGAGGCTCC  489

seq1  AAATGTGCAAATCTTGGCCCAGGCTTTAATTTGATAGACAAATGTAGTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCAAATCTTGGCCCAGGCTTTAATTTGATAGACAAATGTAGTAG  539

seq1  AACTGCTGTTCTTCGTGGGCAATTAAAGACAAGGGAAGGAGATGACCGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTTCTTCGTGGGCAATTAAAGACAAGGGAAGGAGATGACCGGG  589

seq1  ACCGCTAAGCCCTGCTGCCACCTCACTGGTTTTGATCTTCCCACAGAATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTAAGCCCTGCTGCCACCTCACTGGTTTTGATCTTCCCACAGAATC  639

seq1  AAAGCAGCTCTTACGAGAGGCCTCTTATATAAGCCTGGATCCTTTGCTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTCTTACGAGAGGCCTCTTATATAAGCCTGGATCCTTTGCTAG  689

seq1  ATGCACACACACTTGTAATCTCAGCAGCTAGGACAATGAAGCATATCAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACACTTGTAATCTCAGCAGCTAGGACAATGAAGCATATCAGG  739

seq1  GCCCATGAGTTCCAGGTGGGGCTGGGCTACATTGTGAGTTCTAGGCTAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAGTTCCAGGTGGGGCTGGGCTACATTGTGAGTTCTAGGCTAAC  789

seq1  CTGGAACATAGCGTGAGACTCTGTCTCAATAATCTAAGTTAAATAAATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACATAGCGTGAGACTCTGTCTCAATAATCTAAGTTAAATAAATAA  839

seq1  AAAGGGAAGACATTTCTGACGTTCGAAAACATATAGTCTATACATCAAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGACATTTCTGACGTTCGAAAACATATAGTCTATACATCAAAC  889

seq1  ACAACTGTTTACCAACAAAAGGTGATTACTATGTTAACTTTATTTAAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTTTACCAACAAAAGGTGATTACTATGTTAACTTTATTTAAGTG  939

seq1  CAAGCTTCAGGATTATAGTGTTAGCTTTTCAACTGTGCAAGGAGTTGCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCAGGATTATAGTGTTAGCTTTTCAACTGTGCAAGGAGTTGCTT  989

seq1  GGGTCAGAGTTGAAAGCAATCACCCCTTATAATCATTAAACTGGAAAGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAGTTGAAAGCAATCACCCCTTATAATCATTAAACTGGAAAGGA  1039

seq1  AACTAGACAAAAGGGAATACCAATTCCTTTGGTGTAAGATGAGAACACTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACAAAAGGGAATACCAATTCCTTTGGTGTAAGATGAGAACACTT  1089

seq1  GGTGTAAGCGGCTGCTCTGACCTCCACCTCCCACCCTAACCCAGAATGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGCGGCTGCTCTGACCTCCACCTCCCACCCTAACCCAGAATGCA  1139

seq1  TGGTATAGAGGA  1156
      ||||||||||||
seq2  TGGTATAGAGGA  1151

seq1: chr1_157228548_157229435
seq2: B6Ng01-130L21.g_310_1197

seq1  AAATGAACATGTAACCTTTTTCCAGTATAAATATGGAATAAGGATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACATGTAACCTTTTTCCAGTATAAATATGGAATAAGGATAAATA  50

seq1  AGACATAACCTGAATTCTACTTCATGACTCAGAGTATCAATCAGAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAACCTGAATTCTACTTCATGACTCAGAGTATCAATCAGAACTTT  100

seq1  ATGTCCTTTCTAACAGAACGTAGTGAAAGATTTTTTTTAAATCTTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTTCTAACAGAACGTAGTGAAAGATTTTTTTTAAATCTTTAAAG  150

seq1  AAATAATAGATGGTCTCAATTTCTAATTCTTAGTCATTTATTTCTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAGATGGTCTCAATTTCTAATTCTTAGTCATTTATTTCTTTATA  200

seq1  GCTCTCAAAGTTGCTAGAAATAATCTGAGCATTCCATTACCACTCCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAAGTTGCTAGAAATAATCTGAGCATTCCATTACCACTCCATGG  250

seq1  TTTAATCTTCTCATACAACAAATTCATCAACAGCAAAAGGATGTTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTCTCATACAACAAATTCATCAACAGCAAAAGGATGTTTGAAA  300

seq1  ACATAATGACAAAATAACACCAACCAAAACCAGAACAGCTTCTCTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGACAAAATAACACCAACCAAAACCAGAACAGCTTCTCTTTGTA  350

seq1  GCTACCAGCTTAAAAGGTAGCAGATTAATACAACTTTCTTTTATAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGCTTAAAAGGTAGCAGATTAATACAACTTTCTTTTATAAATGC  400

seq1  CAAAGATTTTATTTTTTAGGTCATAAAACTATGAAATAATTTCCAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTTATTTTTTAGGTCATAAAACTATGAAATAATTTCCAGAGAT  450

seq1  AATAAGACAA-CCTAACAAAAAGGGAAATGGAGACTATGAGACTAGATTA  499
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAACCCTAACAAAAAGGGAAATGGAGACTATGAGACTAGATTA  500

seq1  TAAACACCATGAAAAGTAATATACCATGAATGTACACTTGATAATAACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCATGAAAAGTAATATACCATGAATGTACACTTGATAATAACCC  550

seq1  TACACATGCAGAAACTACTTCAAGAATTTTAGAAATGCACTCCAATCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGCAGAAACTACTTCAAGAATTTTAGAAATGCACTCCAATCTTC  600

seq1  AGAAGAAAAAAGGGCTCACATCTGTTCAAAACAACAAAGATCTAGGGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAGGGCTCACATCTGTTCAAAACAACAAAGATCTAGGGACA  650

seq1  GAGGTGAGACACAAGAAAATGCCTGAAGTGGACTCTGTTCATTCAAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGACACAAGAAAATGCCTGAAGTGGACTCTGTTCATTCAAGCAG  700

seq1  ATAATCAAACTGAATTATTTACAAGCACAC-TTTTATCTTCAATACCAGT  748
      || ||||||||||||||||||| ||||||| |||||||||| ||||||||
seq2  AT-ATCAAACTGAATTATTTAC-AGCACACTTTTTATCTTC-ATACCAGT  747

seq1  CAGAGCTCAATCCTAAGGAGCTTAGTGAAACTGTAACACA-TCTGCTAAT  797
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CAGAGCTCAATCCTAAGGGGCTTAGTGAAACTGTAACACATTCTGCTAAT  797

seq1  CAAAAACAAACCAATCGAAAGTGAAATGTTCCAACAAAATCCATGAATAA  847
      | ||||||||||||||| |||||||   ||||||| |||| |||||||||
seq2  C-AAAACAAACCAATCG-AAGTGAATGTTTCCAACGAAATTCATGAATAA  845

seq1  G-ACTGGAGAGAAAGTGGTGAGATTAAA-GAAAAAAGGGTAGA  888
      | |||||  |||||||||||||| |||| ||||||||||||||
seq2  GAACTGGGAAGAAAGTGGTGAGAATAAAGGAAAAAAGGGTAGA  888