BAC Information

Click to search

BAC

Clone NameB6Ng01-130O23
Chromosome1 (Build37)
Map Location 40,330,656 - 40,439,714
singlet/doubletdoublet
Overlap geneIl1r1, Il1rl2
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O23.bB6Ng01-130O23.g
ACCDH932122DH932123
length1,080689
definitionDH932122|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O23, 5' end.DH932123|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,438,640 - 40,439,714)(40,330,656 - 40,331,341)
sequence
gaattcacacatgctggtgctggtaaggtcagggcttcctggctagaagg
gaaaggagctgagttgacatcaggcctgacagcgaatactgtaatagact
caggtctgagtcgggaggggtggccccgagttcccaggttctgacacctc
tttatgatggattgtggagagacacatagaaagaaatgggacaggagaca
gataggtcactaaggaaatgatacagaggaaaagagaggtgtgacatatc
tcagcatgtcctgactccaaggtggcaaaaagtcaaggaggtccactgcg
accttttatggtcactagcataggacctgccttcactgggcttatataat
gggggctttctgattatggccccttgattgaacgaaacccaggtatacta
gaggtagccactctcccagggatgtaccccacatatgcaaacctctggac
tgttgtcctctgtcatttccttgtctcctgtaatcccaaacccagtgatc
tgtgcctctggtgtagaaccatgaagagtctgagtctaggctgcatttcc
tagtgaggctgcagatgttctgtgctacatgaagcatctgcatcatacct
cctgtgcctccgttcacactggatggctcatggccatcgacaaccctttc
agagtatctggctctctctccctggcctctgcaggcacttgcacatgggt
ggtgtatctagagacaagcagacacacttacagactcataaataaatatt
ttaaaaagtcgctttctgtgttatttcatatcttaaatcaactgcactta
tagcaacctaacttaatgcgacttttttttttttttacaaatatcttgtt
cgagtggaaaaccatatacaatggctacatagaaagatgaatattgtacc
aaatctatttcctgcgtgtattaagtcagaatgaaattaactacggggtg
gggggtcggggggagcctccctgcccttatcttcggagatcgagcttggg
aggggcagtgaccgaggaccttaactccttatatcatggctacttcaatc
ttctagacatgtcccatgtgaaggtggggg
gaattcctctggaagaggaagagaattcttcaagttcatgggaaatttct
cattcataagaaactctctaataaattcagtatggccacatacaagaaga
atactctcttcaggtctgaccgtgccttgagtactatgtcggggcccacg
actgtcacttcccttgttccttcactgggcaaggtagctcttgcagaatg
atagaaaggcattgcctctttcccttctgaccctgggatgagggccagct
ccctcccacttgctgctagcttgtccatccttcgcagcttttgtcctggc
caccacccttctgagaaggggcttttgttggaagtcagtaattgtcaaac
tgattcttgttcttactttctatttttttccctccatactttacttcaca
ttggtgcatctcaatccgagtctagcgctatgttaggctgcatctgttgc
tgtaacagaacactggaatctggatgatctgtaagccatagtttatttta
gtgtagatggctgcatctactgaggggcttgtgaggtttcctaacagcag
acacagggaaagacaggtgggtgcttgtggaagagactaagaggtagcct
ggctttgtaacatcttgctcatgtggactttaaagatggtgggtgaggga
tttccttccatccccccatctgtctttcactaagtactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40438640_40439714
seq2: B6Ng01-130O23.b_48_1127 (reverse)

seq1  CCCCCACCCTTCACATGGGA-ATGGTCAGAAGATTTGAGGTAGCCATGGT  49
      |||||| ||||||||||||| |||   |||||| |||| ||||||||| |
seq2  CCCCCA-CCTTCACATGGGACATGTCTAGAAGA-TTGAAGTAGCCATGAT  48

seq1  AT-AGGAGTTAGGTGCCTGTGTCCACTGCCCCTCCC-AGCTCGGTCTCCG  97
      || |||||||| |  |||  || ||||||||||||| |||||| ||||||
seq2  ATAAGGAGTTAAGGTCCTCGGT-CACTGCCCCTCCCAAGCTCGATCTCCG  97

seq1  GAGAT-AGGGCTGGGAGGCT-CCCCCGA-CCCCCACCCCGTAGTTAATTT  144
       |||| ||||| |||||||| ||||||| |||||||||||||||||||||
seq2  AAGATAAGGGCAGGGAGGCTCCCCCCGACCCCCCACCCCGTAGTTAATTT  147

seq1  CATTCTGACTTAATACACGCAGG-AATAGATTTTGGTACAATATTCATCT  193
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CATTCTGACTTAATACACGCAGGAAATAGA-TTTGGTACAATATTCATCT  196

seq1  TTCTATGTAGCCATTGTATATGGTTTTCCACTCGAACAAGATATTTGT-A  242
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCTATGTAGCCATTGTATATGGTTTTCCACTCGAACAAGATATTTGTAA  246

seq1  AAAAAAAAAAAAGTCGCATTAAGTTAGGTTGCTATAAGTGCAGTTGATTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGTCGCATTAAGTTAGGTTGCTATAAGTGCAGTTGATTT  296

seq1  AAGATATGAAATAACACAG-AAGCGACTTTTTAAAATATTTATTTATGGG  341
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  AAGATATGAAATAACACAGAAAGCGACTTTTTAAAATATTTATTTATGAG  346

seq1  TCTGTAAGTGTGTCTGCTTGTCTCTAGATACACCACCCATGTGCAAGTGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTGTGTCTGCTTGTCTCTAGATACACCACCCATGTGCAAGTGC  396

seq1  CTGCAGAGGCCAGGGAGAGAGAGCCAGATACTCTGAAAGGGTTGTCGATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGCCAGGGAGAGAGAGCCAGATACTCTGAAAGGGTTGTCGATG  446

seq1  GCCATGAGCCATCCAGTGTGAACGGAGGCACAGGAGGTATGATGCAGATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGCCATCCAGTGTGAACGGAGGCACAGGAGGTATGATGCAGATG  496

seq1  CTTCATGTAGCACAGAACATCTGCAGCCTCACTAGGAAATGCAGCCTAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTAGCACAGAACATCTGCAGCCTCACTAGGAAATGCAGCCTAGA  546

seq1  CTCAGACTCTTCATGGTTCTACACCAGAGGCACAGATCACTGGGTTTGGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTCTTCATGGTTCTACACCAGAGGCACAGATCACTGGGTTTGGG  596

seq1  ATTACAGGAGACAAGGAAATGACAGAGGACAACAGTCCAGAGGTTTGCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGAGACAAGGAAATGACAGAGGACAACAGTCCAGAGGTTTGCAT  646

seq1  ATGTGGGGTACATCCCTGGGAGAGTGGCTACCTCTAGTATACCTGGGTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGTACATCCCTGGGAGAGTGGCTACCTCTAGTATACCTGGGTTT  696

seq1  CGTTCAATCAAGGGGCCATAATCAGAAAGCCCCCATTATATAAGCCCAGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAATCAAGGGGCCATAATCAGAAAGCCCCCATTATATAAGCCCAGT  746

seq1  GAAGGCAGGTCCTATGCTAGTGACCATAAAAGGTCGCAGTGGACCTCCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGTCCTATGCTAGTGACCATAAAAGGTCGCAGTGGACCTCCTT  796

seq1  GACTTTTTGCCACCTTGGAGTCAGGACATGCTGAGATATGTCACACCTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTGCCACCTTGGAGTCAGGACATGCTGAGATATGTCACACCTCT  846

seq1  CTTTTCCTCTGTATCATTTCCTTAGTGACCTATCTGTCTCCTGTCCCATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCTGTATCATTTCCTTAGTGACCTATCTGTCTCCTGTCCCATT  896

seq1  TCTTTCTATGTGTCTCTCCACAATCCATCATAAAGAGGTGTCAGAACCTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATGTGTCTCTCCACAATCCATCATAAAGAGGTGTCAGAACCTG  946

seq1  GGAACTCGGGGCCACCCCTCCCGACTCAGACCTGAGTCTATTACAGTATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCGGGGCCACCCCTCCCGACTCAGACCTGAGTCTATTACAGTATT  996

seq1  CGCTGTCAGGCCTGATGTCAACTCAGCTCCTTTCCCTTCTAGCCAGGAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTCAGGCCTGATGTCAACTCAGCTCCTTTCCCTTCTAGCCAGGAAG  1046

seq1  CCCTGACCTTACCAGCACCAGCATGTGTGAATTC  1075
      ||||||||||||||||||||||||||||||||||
seq2  CCCTGACCTTACCAGCACCAGCATGTGTGAATTC  1080

seq1: chr1_40330656_40331341
seq2: B6Ng01-130O23.g_74_762

seq1  GAATTCCTCAGGAAGAGGAAGAGAATTCTTCAAGTTCATGGGAAATTTCT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGAAGAGGAAGAGAATTCTTCAAGTTCATGGGAAATTTCT  50

seq1  CATTCATAAGAAACTCTCTAATAAATTCAGTATGGCCACATACAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAAGAAACTCTCTAATAAATTCAGTATGGCCACATACAAGAAGA  100

seq1  ATACTCTCTTCAGGTCTGACCGTGCCTTGAGTACTATGTCGGGGCCCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTTCAGGTCTGACCGTGCCTTGAGTACTATGTCGGGGCCCACG  150

seq1  ACTGTCACTTCCCTTGTTCCTTCACTGGGCAAGGTAGCTCTTGCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACTTCCCTTGTTCCTTCACTGGGCAAGGTAGCTCTTGCAGAATG  200

seq1  ATAGAAAGGCATTGCCTCTTTCCCTTCTGACCCTGGGATGAGGGCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGGCATTGCCTCTTTCCCTTCTGACCCTGGGATGAGGGCCAGCT  250

seq1  CCCTCCCACTTGCTGCTAGCTTGTCCATCCTTCGCAGCTTTTGTCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCACTTGCTGCTAGCTTGTCCATCCTTCGCAGCTTTTGTCCTGGC  300

seq1  CACCACCCTTCTGAGAAGGGGCTTTTGTTGGAAGTCAGTAATTGTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCTTCTGAGAAGGGGCTTTTGTTGGAAGTCAGTAATTGTCAAAC  350

seq1  TGATTCTTGTTCTTACTTTCTATTTTTTTCCCTCCATACTTTACTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTGTTCTTACTTTCTATTTTTTTCCCTCCATACTTTACTTCACA  400

seq1  TTGGTGCATCTCAATCCGAGTCTAGCGCTATGTTAGGCTGCATCTGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCATCTCAATCCGAGTCTAGCGCTATGTTAGGCTGCATCTGTTGC  450

seq1  TGTAACAGAACACTGGAATCTGGATGATCTGTAAGCCATAGTTTA-TTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAACAGAACACTGGAATCTGGATGATCTGTAAGCCATAGTTTATTTTA  500

seq1  GTGTAGATGGCTGCATCTACTGAGGGGCTTGTGAGGTTTCCTAACAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATGGCTGCATCTACTGAGGGGCTTGTGAGGTTTCCTAACAGCAG  550

seq1  ACACAGGGAAAGACAGGTGGGTGCTTGTGGAAGAGACTAAGAGGTAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGAAAGACAGGTGGGTGCTTGTGGAAGAGACTAAGAGGTAGCCT  600

seq1  GGCTTTGTAACAGCCTGCTCATGTGGACTTCAAAGATGGTGGGTGAGGGA  649
      |||||||||||| | ||||||||||||||| |||||||||||||||||||
seq2  GGCTTTGTAACATCTTGCTCATGTGGACTTTAAAGATGGTGGGTGAGGGA  650

seq1  -TTCCTTCCATCCCCCCATCTGTCTTCCACT-AGTACTT  686
       ||||||||||||||||||||||||| |||| |||||||
seq2  TTTCCTTCCATCCCCCCATCTGTCTTTCACTAAGTACTT  689