BAC Information

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BAC

Clone NameB6Ng01-131D16
Chromosome1 (Build37)
Map Location 94,582,902 - 94,715,627
singlet/doubletdoublet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D16.bB6Ng01-131D16.g
ACCDH932339DH932340
length1,1161,018
definitionDH932339|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D16, 5' end.DH932340|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,582,902 - 94,584,033)(94,714,608 - 94,715,627)
sequence
gaattctccctcacctgtgccatgtgtaacacagcttgtgtgggaaagcc
cagaagttacaaaggagagagatgcagctgctatagcaatggcccacaaa
gggccatgagccttgggttcctgtgttttcatcctcattccttcctggcc
ctctagttagcacactcactctcaagcacgctataacaggaatctctctg
gcgggggcctccatattaacagttgtaaaaactaacaaaccaacaaaaaa
cagagacttattcccctctggtgtctctttgcttttctcttcttcctctt
cttttgcccaccatattcaacctttgtctagctggttctgtgtgccttga
agccttgtaggactctgactagatgtatattcccacctcagtggtctacc
ttctcctggactgctgccagctgtcagccttgcaacacacaccttgtcac
cttctgtctatctatctgctttgggacagagcttgggacacagtaggagc
tcaatggctaggtgaatctgggacatgggggctcaaaaagcactttccta
ctatgtgaatgccaggagccatagagaagggatgggatggcgggttacct
tgttcactgcggtgacaaaatgcctaacgaggtgtgatttatgtgcagaa
aggtttatttcagcttgtagtttgaggagagagattaactgtatttttgc
ctcttccatgcaatgctgggcacatatccactgccctttctgaagaagca
gtgatcagcacgcagatgcattctctctcagcaaagtaatacagatgtaa
gaggctgtgtcgggcagctcctccgcaccgctgctgtccccagggacgag
cagcttatggctggctactcacacctcccacctcgctctgtgtttgtcaa
gacgcacacacttttccctggagaaggtctgcttttgccacaatgacatc
accgggaatgtgtgggtcagccatttcaatgttggtttctccagtgtctg
gagattatgccttgaggagtcaggagacttttctctcacctcccctcagc
attcactgcacttaataaaataatgcgtgaccgctgtctggctggagagg
gatccgtttaacttgt
gaattcaagaactgtgtgatgtttcagcttgatggtccgttggctgggtg
gagagttagcaaagttcacctatgggtgtgtctgtgagggcgggcgcctc
cagggagcatcagagcgtgagcttttgccctgacagatggtctcatcccc
tccctgagaacactcatatgaagtgctggcaggtgtttggtccagcatca
cgtgctgggtcccctcttcttgttgtgcatgtactggggccaaacctgca
ccctttgaataacgtgttttacgggatatatacttcatactttccaaaat
gtcttggcctttctttcaaatgttttccacatgaagcttgacctcaaccc
atcaatcccataaactcggctgaaatctccctgaatttatagatcattgc
tcagagaactggcctcttctcaaaacttgagtctgtacccccagaatgca
ctgcgtaactcaaatctttccctttggctaatttatttgatttttttttt
aaacgaagtttcacagttttcattgtgtagacctgtttacactttccggg
cttgtctctttttaagaagtgaagtgttgtaaacaatcgggaatttgtga
ggcagaattgcactcggagcctcagtcttctgagagtttgattgttgctg
tgtgaggcaacccacagcatcaccacattggcaaatcattttttcagttg
catgttccgatttccagatcacatgacatctgtgttgaagataccttgta
ctttaaaaatgaatttttctcttttataaatatttttgttaatttttaaa
agattttatttatttatttgtttatttatttatttgtttattatttattt
attaattttttatttattatttttaatgtccactggtgtttgcctttgtg
tttgacatgtggaaggtgtcagatcctctgggactggagttacaacagtg
tgaactgcatgtgggtggttggaatgaacctgggtcttctggaaaatcaa
ccagggctccaactgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94582902_94584033
seq2: B6Ng01-131D16.b_45_1160

seq1  GAATTCTCCCTCACCTGTGCCATGTGTAACACAGCTTGTGTGGGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCACCTGTGCCATGTGTAACACAGCTTGTGTGGGAAAGCC  50

seq1  CAGAAGTTACAAAGGAGAGAGATGCAGCTGCTATAGCAATGGCCCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTACAAAGGAGAGAGATGCAGCTGCTATAGCAATGGCCCACAAA  100

seq1  GGGCCATGAGCCTTGGGTTCCTGTGTTTTCATCCTCATTCCTTCCTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGAGCCTTGGGTTCCTGTGTTTTCATCCTCATTCCTTCCTGGCC  150

seq1  CTCTAGTTAGCACACTCACTCTCAAGCACGCTATAACAGGAATCTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTAGCACACTCACTCTCAAGCACGCTATAACAGGAATCTCTCTG  200

seq1  GCGGGGGCCTCCATATTAACAGTTGTAAAAACTAACAAACCAACAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGCCTCCATATTAACAGTTGTAAAAACTAACAAACCAACAAAAAA  250

seq1  CAGAGACTTATTCCCCTCTGGTGTCTCTTTGCTTTTCTCTTCTTCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTATTCCCCTCTGGTGTCTCTTTGCTTTTCTCTTCTTCCTCTT  300

seq1  CTTTTGCCCACCATATTCAACCTTTGTCTAGCTGGTTCTGTGTGCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCCACCATATTCAACCTTTGTCTAGCTGGTTCTGTGTGCCTTGA  350

seq1  AGCCTTGTAGGACTCTGACTAGATGTATATTCCCACCTCAGTGGTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTAGGACTCTGACTAGATGTATATTCCCACCTCAGTGGTCTACC  400

seq1  TTCTCCTGGACTGCTGCCAGCTGTCAGCCTTGCAACACACACCTTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGACTGCTGCCAGCTGTCAGCCTTGCAACACACACCTTGTCAC  450

seq1  CTTCTGTCTATCTATCTGCTTTGGGACAGAGCTTGGGACACAGTAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTATCTATCTGCTTTGGGACAGAGCTTGGGACACAGTAGGAGC  500

seq1  TCAATGGCTAGGTGAATCTGGGACATGGGGGCTCAAAAAGCACTTTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCTAGGTGAATCTGGGACATGGGGGCTCAAAAAGCACTTTCCTA  550

seq1  CTATGTGAATGCCAGGAGCCATAGAGAAGGGATGGGATGGCGGGTTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAATGCCAGGAGCCATAGAGAAGGGATGGGATGGCGGGTTACCT  600

seq1  TGTTCACTGCGGTGACAAAATGCCTAACGAGGTGTGATTTATGTGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTGCGGTGACAAAATGCCTAACGAGGTGTGATTTATGTGCAGAA  650

seq1  AGGTTTATTTCAGCTTGTAGTTTGAGGAGAGAGATTAACTGTATTTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTTCAGCTTGTAGTTTGAGGAGAGAGATTAACTGTATTTTTGC  700

seq1  CTCTTCCATGCAATGCTGGGCACATATCCACTGCCCTTTCTGAAGAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATGCAATGCTGGGCACATATCCACTGCCCTTTCTGAAGAAGCA  750

seq1  GTGATCAGCACGCAGATGCATTCTCTCTCAGCAAAGTAAATACAGATGTA  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGATCAGCACGCAGATGCATTCTCTCTCAGCAAAGT-AATACAGATGTA  799

seq1  AGAGGCTGTGTCGGGCAGCTCCTCCGCACCGCTGCTGTCCCCAGGGACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGTGTCGGGCAGCTCCTCCGCACCGCTGCTGTCCCCAGGGACGA  849

seq1  GCAGCTTATGGCTGGCTACTCACACCTCCCACCTCGCTCTGTGTTTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCAGCTTATGGCTGGCTACTCACACCTCCCACCTCGCTCTGTGTTTGTC-  898

seq1  AAGACGCACACACTTTTCCCTGGAGAAGGTCTGCTTTTTGCCACAATGAC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGACGCACACACTTTTCCCTGGAGAAGGTCTGC-TTTTGCCACAATGAC  947

seq1  ATCACCGGGAATGTGTGGGTCAGCCATTTTCAAATGTTTGGTTTCTCCCA  1000
      |||||||||||||||||||||||||||||   |||| ||||||||| |||
seq2  ATCACCGGGAATGTGTGGGTCAGCCATTT--CAATG-TTGGTTTCT-CCA  993

seq1  GTGTCTGGAGATTATTGCCTTGAGGAGTCAGGAGACTTTTCTCTCACC-C  1049
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GTGTCTGGAGATTA-TGCCTTGAGGAGTCAGGAGACTTTTCTCTCACCTC  1042

seq1  CCCTCAGCAATTCCAACCTGCAACTTATAAAAATAAATGCGTGAACCGCT  1099
      |||||||| ||||    |||| |||||  ||||| |||||||| ||||||
seq2  CCCTCAGC-ATTC---ACTGC-ACTTAATAAAAT-AATGCGTG-ACCGCT  1085

seq1  GGTGCTGGGCTGAGAGGGATCACGTTT-ACTTGT  1132
      |   ||||   |||||||||| ||||| ||||||
seq2  G--TCTGGCTGGAGAGGGATC-CGTTTAACTTGT  1116

seq1: chr1_94714608_94715627
seq2: B6Ng01-131D16.g_69_1086 (reverse)

seq1  TATCAGTTCGTAGCACTGGTTGCTCTTCCAGAGGACCCAGGTTCAATTCC  50
      |||||||| | ||| ||||||| | ||||||| ||||||||||| |||||
seq2  TATCAGTT-GGAGCCCTGGTTGATTTTCCAGAAGACCCAGGTTC-ATTCC  48

seq1  AACCACCCACATGGCAGTTCACAACTGTCTGTAACTCCAGTCCCAGAGGA  100
      |||||||||||| ||||||||| ||||| |||||||||||||||||||||
seq2  AACCACCCACAT-GCAGTTCAC-ACTGT-TGTAACTCCAGTCCCAGAGGA  95

seq1  TCTGACACCTT-CACATGTACAAACACAAAGGCAAACACCAGTGGACATT  149
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TCTGACACCTTCCACATGT-CAAACACAAAGGCAAACACCAGTGGACATT  144

seq1  AAATA-AATAAATAAATAAATAAATAAATAAATAAATAAACAAATAAATA  198
      ||| | |||||||||| |||| ||||||||||| ||||||||||||||||
seq2  AAAAATAATAAATAAA-AAATTAATAAATAAAT-AATAAACAAATAAATA  192

seq1  AATAAACAAATAAATAAAT-AAATCTTTTAAAAATTAACAAAAATATTTA  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATAAACAAATAAATAAATAAAATCTTTTAAAAATTAACAAAAATATTTA  242

seq1  TAAAAGAG-AAAATTCATTTTTAAAGTACAAGGTATCTTCAACACAGATG  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAAAATTCATTTTTAAAGTACAAGGTATCTTCAACACAGATG  292

seq1  TCATGTGATCTGGAAATCGGAACATGCAACTG-AAAAATGATTTGCCAAT  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATGTGATCTGGAAATCGGAACATGCAACTGAAAAAATGATTTGCCAAT  342

seq1  GTGGTGATGCTGTGGGTTGCCTCACACAGCAACAATCAAACTCTCAGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGCTGTGGGTTGCCTCACACAGCAACAATCAAACTCTCAGAAG  392

seq1  ACTGAGGCTCCGAGTGCAATTCTGCCTCACAAATTCCCGATTGTTTACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTCCGAGTGCAATTCTGCCTCACAAATTCCCGATTGTTTACAA  442

seq1  CACTTCACTTCTT-AAAAGAGACAAGCCCGGAAAGTGTAAACAGGTCTAC  494
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTTCACTTCTTAAAAAGAGACAAGCCCGGAAAGTGTAAACAGGTCTAC  492

seq1  ACAATGAAAACTGTGAAACTTCGTTTAAAAAAAAAATCAAATAAATTAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAAACTGTGAAACTTCGTTTAAAAAAAAAATCAAATAAATTAGC  542

seq1  CAAAGGGAAAGATTTGAGTTACGCAGTGCATTCTGGGGGTACAGACTCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAAGATTTGAGTTACGCAGTGCATTCTGGGGGTACAGACTCAA  592

seq1  GTTTTGAGAAGAGGCCAGTTCTCTGAGCAATGATCTATAAATTCAGGGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGAAGAGGCCAGTTCTCTGAGCAATGATCTATAAATTCAGGGAG  642

seq1  ATTTCAGCCGAGTTTATGGGATTGATGGGTTGAGGTCAAGCTTCATGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCGAGTTTATGGGATTGATGGGTTGAGGTCAAGCTTCATGTGG  692

seq1  AAAACATTTGAAAGAAAGGCCAAGACATTTTGGAAAGTATGAAGTATATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGAAAGAAAGGCCAAGACATTTTGGAAAGTATGAAGTATATA  742

seq1  TCCCGTAAAACACGTTATTCAAAGGGTGCAGGTTTGGCCCCAGTACATGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTAAAACACGTTATTCAAAGGGTGCAGGTTTGGCCCCAGTACATGC  792

seq1  ACAACAAGAAGAGGGGACCCAGCACGTGATGCTGGACCAAACACCTGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAAGAGGGGACCCAGCACGTGATGCTGGACCAAACACCTGCCA  842

seq1  GCACTTCATATGAGTGTTCTCAGGGAGGGGATGAGACCATCTGTCAGGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCATATGAGTGTTCTCAGGGAGGGGATGAGACCATCTGTCAGGGC  892

seq1  AAAAGCTCACGCTCTGATGCTCCCTGGAGGCGCCCGCCCTCACAGACACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCACGCTCTGATGCTCCCTGGAGGCGCCCGCCCTCACAGACACA  942

seq1  CCCATAGGTGAACTTTGCTAACTCTCCACCCAGCCAACGGACCATCAAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGTGAACTTTGCTAACTCTCCACCCAGCCAACGGACCATCAAGC  992

seq1  TGAAACATCACACAGTTCTTGAATTC  1020
      ||||||||||||||||||||||||||
seq2  TGAAACATCACACAGTTCTTGAATTC  1018