BAC Information

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BAC

Clone NameB6Ng01-131D23
Chromosome3 (Build37)1 (Build37)
Map Location 132,569,949 - 132,571,11861,720,681 - 61,721,246
singlet/doubletsingletsinglet
Overlap geneNpnt
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858
Downstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D23.bB6Ng01-131D23.g
ACCDH932353DH932354
length1,165567
definitionDH932353|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D23, 5' end.DH932354|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,569,949 - 132,571,118)(61,720,681 - 61,721,246)
sequence
gaattcttctgcgctcacaaccaacagcagtagatacgacaccatctact
tagttgcttcaactaagcatgcacgctaaacctttcgcttacaactccta
aaccaccaccaaatcctgttatttctacttctaaaagactgctggaacct
gcctagcactgtcaaccacctcattcctacccagcatccctcgctttaga
ctgagacaaagaagtctggaaattggactgccaatcttatctcctccagt
catttcacctctctacaggctctttaaatttattttaaattttattttct
atgtatactgttttgactgcatgtagatgtgtgtaccatgtgcatcgccc
atgcctatggaagccagagacagttggatgccctgggactgaagttacag
atggttgtaagctgcattgtgagtactgggaatcctggaagattagcccg
tgtgctcttagccagttgcctttccagtcccttggcatgttctttctgta
gctaatggcccaggtctaactttaggaatcccctatggatgattttctaa
gacaggcccttttgtttctcttacgatcttctgctagcacttggcagggc
cagtaattttattgagtattattaacgttctgtcttccccggtaggaagt
cacttctttaaggaccaaaacctcatgagctttgcccgaggctatgcagc
cagcatagcacagtgtcttgaatacagcagctgcttagtaaatggctctt
aattagtgactagctccttgcaggagactctactgagctcttttgaactt
ttggaacacatgagctcactcgccacttgcaatggtcttgtgttaatcac
attctaaagaaagggaggcccaagctcaaagaaaagaagttcttttccta
actaagttgcatagctagtctgcagctcagccaggttgagagagtccaaa
ctctgccatgatctaactgccatctcaatgttgtgggaaaatgctatgcc
ctgtgatgcgtgatgcacccatgtaatgccgtagccttggtgactgctca
gctccattgctcctcttccctctgggctacagaaactgaaatcagcttcc
tgaacccaaggcctctgtttctgcaggttttggcacaattggatgggatc
cctctgttccatgct
ctgatttttccaacacttttatcatgaatgggtgttggatcttgtcaaat
gctttttctgcatctaacgagatgatcatgtggtttttgtctttgagttt
gtttatataatggattacattgatggattttcgtatattaaaccatccct
gcatccctggaataaaacctacttggtcaggatggatgattgctttaatg
tgttcttggattcggttagcgagaattttattgaggatttttgcatcgat
attcataagagaaattggtctgaagttttctatctttgttgggtctttct
gtggtttaggtatcagagtaatagtggcttcataaaatgagttgggtaga
gtaccttctacttctattttgtgaaatagtttgtgcagaactggaattag
atcttctttgaaggtctgatagaactctgcactaaacccatctggtcctg
ggctttttttggttgggagactattttaactgcttctatttctttaggtg
atatgggactgtttagatgatcaacttgatcctgtttcaactttggtacc
ttggtatctgtccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132569949_132571118
seq2: B6Ng01-131D23.b_46_1210

seq1  GAATTCTTCTGCGCTCACAACCAACAGCAGTAGATACGACACCATCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCGCTCACAACCAACAGCAGTAGATACGACACCATCTACT  50

seq1  TAGTTGCTTCAACTAAGCATGCACGCTAAACCTTTCGCTTACAACTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTTCAACTAAGCATGCACGCTAAACCTTTCGCTTACAACTCCTA  100

seq1  AACCACCACCAAATCCTGTTATTTCTACTTCTAAAAGACTGCTGGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCACCAAATCCTGTTATTTCTACTTCTAAAAGACTGCTGGAACCT  150

seq1  GCCTAGCACTGTCAACCACCTCATTCCTACCCAGCATCCCTCGCTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCACTGTCAACCACCTCATTCCTACCCAGCATCCCTCGCTTTAGA  200

seq1  CTGAGACAAAGAAGTCTGGAAATTGGACTGCCAATCTTATCTCCTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAAAGAAGTCTGGAAATTGGACTGCCAATCTTATCTCCTCCAGT  250

seq1  CATTTCACCTCTCTACAGGCTCTTTAAATTTATTTTAAATTTTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACCTCTCTACAGGCTCTTTAAATTTATTTTAAATTTTATTTTCT  300

seq1  ATGTATACTGTTTTGACTGCATGTAGATGTGTGTACCATGTGCATCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACTGTTTTGACTGCATGTAGATGTGTGTACCATGTGCATCGCCC  350

seq1  ATGCCTATGGAAGCCAGAGACAGTTGGATGCCCTGGGACTGAAGTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTATGGAAGCCAGAGACAGTTGGATGCCCTGGGACTGAAGTTACAG  400

seq1  ATGGTTGTAAGCTGCATTGTGAGTACTGGGAATCCTGGAAGATTAGCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTAAGCTGCATTGTGAGTACTGGGAATCCTGGAAGATTAGCCCG  450

seq1  TGTGCTCTTAGCCAGTTGCCTTTCCAGTCCCTTGGCATGTTCTTTCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTAGCCAGTTGCCTTTCCAGTCCCTTGGCATGTTCTTTCTGTA  500

seq1  GCTAATGGCCCAGGTCTAACTTTAGGAATCCCCTATGGATGATTTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGCCCAGGTCTAACTTTAGGAATCCCCTATGGATGATTTTCTAA  550

seq1  GACAGGCCCTTTTGTTTCTCTTACGATCTTCTGCTAGCACTTGGCAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCCTTTTGTTTCTCTTACGATCTTCTGCTAGCACTTGGCAGGGC  600

seq1  CAGTAATTTTATTGAGTATTATTAACGTTCTGTCTTCCCCGGTAGGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTTTATTGAGTATTATTAACGTTCTGTCTTCCCCGGTAGGAAGT  650

seq1  CACTTCTTTAAGGACCAAAACCTCATGAGCTTTGCCCGAGGCTATGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTTAAGGACCAAAACCTCATGAGCTTTGCCCGAGGCTATGCAGC  700

seq1  CAGCATAGCACAGTGTCTTGAATACAGCAGCTGCTTAGTAAATGGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGCACAGTGTCTTGAATACAGCAGCTGCTTAGTAAATGGCTCTT  750

seq1  AATTAGTGACTAGCTCCTTGCAGGAGACTCTACTGAGCTCTTTTGAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGACTAGCTCCTTGCAGGAGACTCTACTGAGCTCTTTTGAACTT  800

seq1  TTGGAACACATGAGCTCACTCGCCACTTGCAATGGTCTTGTGTTAATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACACATGAGCTCACTCGCCACTTGCAATGGTCTTGTGTTAATCAC  850

seq1  ATTCTAAAGAAAGGGAGGCCCAAGCTCAAAGAAAAGAAGTTCTTTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGAAAGGGAGGCCCAAGCTCAAAGAAAAGAAGTTCTTTTCCTA  900

seq1  ACTAAGGTTGCATAGCTAGTCTGCAGCTCAGCCAGGTTGAGAGAGTCCAA  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAA-GTTGCATAGCTAGTCTGCAGCTCAGCCAGGTTGAGAGAGTCCAA  949

seq1  ACTCTGCCATGATCTAAACTGCCATCTCAATGTTGTGGGAAAATGCTATG  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCATGATCT-AACTGCCATCTCAATGTTGTGGGAAAATGCTATG  998

seq1  CCCTGTGATGCGTGATGCAACCCATGTAATGCCGTAGCCTTGGTGACCTG  1050
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  CCCTGTGATGCGTGATGC-ACCCATGTAATGCCGTAGCCTTGGTGA-CTG  1046

seq1  CTCAGCTCCATTGCT-CTCTTCCCTCTGGGCTACAGAAACTGAGATCCAG  1099
      ||||||||||||||| ||||||||||||||||||||||||||| || |||
seq2  CTCAGCTCCATTGCTCCTCTTCCCTCTGGGCTACAGAAACTGAAAT-CAG  1095

seq1  TTTTCCTGAACCC-AGTGCTCTGTTTCCTGCAGGGTTTTTGCACATTTGG  1148
        ||||||||||| ||  |||||||| ||||| |||||| ||||| ||||
seq2  -CTTCCTGAACCCAAGGCCTCTGTTT-CTGCA-GGTTTTGGCACAATTGG  1142

seq1  AT-GGTTTCCTCTGTCTCATGCT  1170
      || || | |||||||  ||||||
seq2  ATGGGATCCCTCTGTTCCATGCT  1165

seq1: chr1_61720681_61721246
seq2: B6Ng01-131D23.g_75_640 (reverse)

seq1  TCTGGACAGATACC-AGGTACCAAAGTTGAATCAGGATCAAGTTGACCAT  49
      |||||||||||||| |||||||||||||||| |||||||||||||| |||
seq2  TCTGGACAGATACCAAGGTACCAAAGTTGAAACAGGATCAAGTTGATCAT  50

seq1  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCT  99
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTA-AAATAGTCT  99

seq1  CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATC  149

seq1  AGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAA  199

seq1  ATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTAC  249

seq1  TCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC  299
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAAAACTTCAGAC  299

seq1  CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCT  349

seq1  AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGG  399

seq1  TTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATG  449

seq1  TAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG  499

seq1  TTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA  549

seq1  AGTTTTGGAAAGATCAG  566
      ||| ||||||| |||||
seq2  AGTGTTGGAAAAATCAG  566