BAC Information

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BAC

Clone NameB6Ng01-131E01
Chromosome1 (Build37)
Map Location 90,115,991 - 90,202,216
singlet/doubletdoublet
Overlap geneUgt1a@, Ugt1a7c, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a10, Ugt1a9, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E01.bB6Ng01-131E01.g
ACCDH932357DH932358
length1,0991,016
definitionDH932357|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E01, 5' end.DH932358|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,115,991 - 90,117,073)(90,201,197 - 90,202,216)
sequence
gaattctcttatcttacacaggtcccaaagcaacataaccacatgatcag
ggatgaaaagtctatagctagcccaaaataaacctttgctcatgagttgc
tacatctcaggtatttgttacagtaacataaagtttattaacacacctat
tgttttgacaaatacacataaaacattacagacattctgtattagtcagt
tttgcatcagcataatgaaataaccaaagcaagtaagttaaaagagagaa
gggctgtttaacttagaggttatcttgctttggcccagttctgtgagggt
aacagaaggtggcatatcaaacaggagcatgtacatgaacaaaccatgta
ttatatcttgaggcaggaacagggagctagagtctgggctgtcacaatcc
tctttgaggaagatctttaatgacctatgggcattttaataggccctgcc
tgaaaaaaaaagttttccctgcttctcaatagcacacactgaagaccaag
cttttatcacatggctctttggggacatttcagattcaagctatatattc
tgaccaaaagttccaaaagttcatgtccatttcgcaatttaaaaaaaaaa
tgtattaatgccagaccttaatctagagaggcagaggcaagtagatctct
gagtacaaaggcaccttggtccacaaagcaagttccaagacatttgagac
ctcataatggagtaattctttgtctaaagccagtcccaagatctactgtt
ctagcaataaaagtttaagtccaaaggtctcatcaagactcaggacagtt
gtgagcctctgtaaaaagaaagaaccagaaaaataaatactaaaacaaaa
caaaacccaaatcacacacaaactcattggagctcagacatcatgtaaac
gtcccctattctgaaagggagtcatggagaataaaaagaggcaccttccc
caaataagaaagggaaaacatcaaacaccaaagatctttggtaccaagaa
ctcactatggtggaatgacactcccatgagcatgccatttgcacttctgt
gctcagaagtggatctactgtgcctgcccttcaaactgatttcacactt
gaattcagttcccaagacccatatcaggcagctcacaagcacctgtaact
caagctcccagggctctaactccattttctggccttggcaggcacctagg
tggacatgacacatatatacatatataatcataaaataaagtagagagaa
attgagaagcatcaacctctggcctccacatgcatacctaagcacacata
aagacgatggcatgagaaatataaacacaaaggagttcagattaggcagg
atgcaaatcaagaaagacttctgtagagacagatgtctgagcaaggtctg
gaagcagggctgggttcgtgtagcaattcccatagatggtgttttcagtg
taaaaagaaaacccttcaagcaaacaggggcaaaaaaagatatcagcctg
aggtctctagtgcaaacaccctagtcataagtcagataacaaatgttgta
acaatggccaagagcaaggctgtggggacaggagggtgcatggaaagggg
aacaaaggcctcttcctgtaagcgaggaagcctgtgagaggagaaaaatg
tcaggcagggaatcagagtactctcctgatcacccttaacaatggatcta
ggactgcagcatcccacacccccacaatctcctttcctaccccacactct
tgcacctgtacctctaaatggagccagaaaaatcgaggcttctcttccct
tgatctgcactggaggcagcaagaatcttcagaggaagcaaggaatccaa
acaaaaacctaatagaaaaatcaagcaaactgaagaggaccaggaacaaa
gaaaaggaaagacaccagggaacccatttcagctccctgcctgtgtctgc
cagatgtcatgagggaacctagaaggacttgacttcaagctaaatttcca
agggtagattcaaccatggctgtcagtgactgctacaggtcacagcacag
tgtacaattctagtgggctcaacgtataacaagacagaaaactggtagga
gcagaagactgctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90115991_90117073
seq2: B6Ng01-131E01.b_45_1141

seq1  ATTCTCTTATCTTACACAGGTCCCAAAGCAACATAACCACATGATCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTATCTTACACAGGTCCCAAAGCAACATAACCACATGATCAGGG  50

seq1  ATGAAAAGTCTATAGCTAGCCCAAAATAAACCTTTGCTCATGAGTTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTCTATAGCTAGCCCAAAATAAACCTTTGCTCATGAGTTGCTA  100

seq1  CATCTCAGGTATTTGTTACAGTAACATAAAGTTTATTAACATACCTATTG  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATCTCAGGTATTTGTTACAGTAACATAAAGTTTATTAACACACCTATTG  150

seq1  TTTTGACAAATACACATAAAACATTACAGACATTCTGTATTAGTCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAAATACACATAAAACATTACAGACATTCTGTATTAGTCAGTTT  200

seq1  TGCATCAGCATAATGAAATAACCAAAGCAAGTAAGTTAAAAGAGAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCATAATGAAATAACCAAAGCAAGTAAGTTAAAAGAGAGAAGG  250

seq1  GCTGTTTAACTTAGAGGTTATCTTGCTTTGGCTCAGTTCTGTGAGGGTAA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGTTTAACTTAGAGGTTATCTTGCTTTGGCCCAGTTCTGTGAGGGTAA  300

seq1  CAGAAGGTGGCATATCAAACAGGAGCATGTACATGAACAAACCATGAATT  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAAGGTGGCATATCAAACAGGAGCATGTACATGAACAAACCATGTATT  350

seq1  ATATCTTGAGGCAGGAACAGGGAGCTAGAGTCTGGGCTGTCACAATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGAGGCAGGAACAGGGAGCTAGAGTCTGGGCTGTCACAATCCTC  400

seq1  TTTGAGGAAGATCTTTAATGACCTATGGGCATTTTAATAGGCCCTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGAGGAAGATCTTTAATGACCTATGGGCATTTTAATAGGCCCTGCCTG  450

seq1  AAAAAAAAAGTTTTCCCTGCTTCTCAATAGCACACACTGAAGACCAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTTTTCCCTGCTTCTCAATAGCACACACTGAAGACCAAGCT  500

seq1  TTTATCACATGGCTCTTTGGGGGCATTTCAGATTCAAGCTATATATTCTG  550
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATCACATGGCTCTTTGGGGACATTTCAGATTCAAGCTATATATTCTG  550

seq1  ACCAAAAGTTCCAAAAGTTCATGTCCATTTCGCAA-TTAAAAAAAAAATA  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  ACCAAAAGTTCCAAAAGTTCATGTCCATTTCGCAATTTAAAAAAAAAATG  600

seq1  GATTAATGCCAGACCTTAACCTAGAGAGGCAGAGGCAAGTAGATCTCTGA  649
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTAATGCCAGACCTTAATCTAGAGAGGCAGAGGCAAGTAGATCTCTGA  650

seq1  GTACAAAGGCACCTTGGTCCACAAAGCAAGTTCCAAGACATTTGAGACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGCACCTTGGTCCACAAAGCAAGTTCCAAGACATTTGAGACCT  700

seq1  CATAATGGAGTAATTCTTTGTCTAAAGCCAGTCCCAAGATCTATTGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATAATGGAGTAATTCTTTGTCTAAAGCCAGTCCCAAGATCTACTGTTCT  750

seq1  AGCAATAAAAGTTTAAGTCC-AAGGTCTCATCAAGACTCAGGACAGTTGT  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCAATAAAAGTTTAAGTCCAAAGGTCTCATCAAGACTCAGGACAGTTGT  800

seq1  GAGCCTCTGTAAAAAGAAAGAACCAGAAAAACAAATACTAAAACAAAACA  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGCCTCTGTAAAAAGAAAGAACCAGAAAAATAAATACTAAAACAAAACA  850

seq1  AAACCCAAATCACACACAAACTCATTGGAGCTCAGACATCATGTAAACGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAATCACACACAAACTCATTGGAGCTCAGACATCATGTAAACGT  900

seq1  CCCCTATTCTGAACGGGAGTCATGGAGA--AATAAGA-------------  933
      ||||||||||||| ||||||||||||||  || ||||             
seq2  CCCCTATTCTGAAAGGGAGTCATGGAGAATAAAAAGAGGCACCTTCCCCA  950

seq1  ------AAAGGGGAAACATCAAACACCAAAGATCTTTGGTACCAAGGACT  977
            |||||| ||||||||||||||||||||||||||||||||| |||
seq2  AATAAGAAAGGGAAAACATCAAACACCAAAGATCTTTGGTACCAAGAACT  1000

seq1  CACTATGGTGGAATGAACACTCCCAATGAGCATGGCCATTTGCACTTCTG  1027
      ||||||||||||||| |||||||| |||||||| ||||||||||||||||
seq2  CACTATGGTGGAATG-ACACTCCC-ATGAGCAT-GCCATTTGCACTTCTG  1047

seq1  TGGCTTCAGAGGTTGGATCCTACTGTGCCTGCCCTTTCAAACTGGTTTTC  1077
      ||   ||||| | ||||| ||||||||||||||| |||||||| | ||||
seq2  TG--CTCAGAAG-TGGAT-CTACTGTGCCTGCCC-TTCAAACT-GATTTC  1091

seq1  ACACTT  1083
      ||||||
seq2  ACACTT  1097

seq1: chr1_90201197_90202216
seq2: B6Ng01-131E01.g_71_1082 (reverse)

seq1  TGCAGCAAGTCTTCTGCCCCTACCAGTTTTCTCTCTTGTTACACGTTGAG  50
      |||||| |||||||||| |||||||||||||| |||||||| ||||||||
seq2  TGCAGC-AGTCTTCTGCTCCTACCAGTTTTCTGTCTTGTTATACGTTGAG  49

seq1  CCCACAATGAAATTGTACAACTGTGCTGTGACCTGTAGCAGTCACTTGAC  100
      |||||  |  |||||||| |||||||||||||||||||||||||| ||||
seq2  CCCAC--TAGAATTGTAC-ACTGTGCTGTGACCTGTAGCAGTCAC-TGAC  95

seq1  AGCCCATGGTTTGATTCTACCCTTGGAAATTTAGCTTGAAGTCAAGTCCT  150
      || |||||| |||| |||||||||||||||||||||||||||||||||||
seq2  AG-CCATGG-TTGAATCTACCCTTGGAAATTTAGCTTGAAGTCAAGTCCT  143

seq1  TCTAGGTTCCCTCATGACATTCTGGCAGACACAGGCAAGGGAGCTGAAAT  200
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TCTAGGTTCCCTCATGACA-TCTGGCAGACACAGGC-AGGGAGCTGAAAT  191

seq1  GGGTTTCCTGGTGTCTTTCCTTTTCTTTGTTCCTGGTCCACTTCAGTTTG  250
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGTTCCCTGGTGTCTTTCCTTTTCTTTGTTCCTGGTCCTCTTCAGTTTG  241

seq1  CTTGATTTTTCTATTAGGTTTTGTATTTGGATTCCTTGCTTCCTCTGAAG  300
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  CTTGATTTTTCTATTAGGTTTT-TGTTTGGATTCCTTGCTTCCTCTGAAG  290

seq1  ATTCTCGTTGCCTCCCGTGCAGATCAAGGGAAGAGAAGCCTGGATTTTTC  350
      ||||| | ||||||| ||||||||||||||||||||||||| ||||||||
seq2  ATTCTTGCTGCCTCCAGTGCAGATCAAGGGAAGAGAAGCCTCGATTTTTC  340

seq1  TGGCTCCATTTAGAGGTACAGGTGCAAGAGTGTGGGGTAGGAAAGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCATTTAGAGGTACAGGTGCAAGAGTGTGGGGTAGGAAAGGAGAT  390

seq1  CAT-GGGGTGTGGGATGCTGCAGTCCTAGATCCATTGTTAAGGGTGATCA  449
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGTGTGGGATGCTGCAGTCCTAGATCCATTGTTAAGGGTGATCA  440

seq1  TGAGAGTCCTCTGATTCCCTGCCTGACTTTTTTCTTCTCTCACAGGCTTC  499
       |||||| ||||||||||||||||||| ||||||| ||||||||||||||
seq2  GGAGAGTACTCTGATTCCCTGCCTGACATTTTTCTCCTCTCACAGGCTTC  490

seq1  CTCGCTTACAGGAAGAGGCCTTTGTCCCCCTTTCCATGCACCCTCCTGTC  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCGCTTACAGGAAGAGGCCTTTGTTCCCCTTTCCATGCACCCTCCTGTC  540

seq1  CCCACAGCCTTGCTCTTGGCCGTTGTTACAACATTTGTTATCTGACTTAT  599
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCACAGCCTTGCTCTTGGCCATTGTTACAACATTTGTTATCTGACTTAT  590

seq1  GACTAGGGTGTTTGCACTAGAGACCTCAGGCTGATATC-TTTTTTGCCCC  648
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTAGGGTGTTTGCACTAGAGACCTCAGGCTGATATCTTTTTTTGCCCC  640

seq1  TGTTTGCTTGAAGGGTTTTCTTTTTACACTGAAAACACCATCTATGGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGAAGGGTTTTCTTTTTACACTGAAAACACCATCTATGGGAA  690

seq1  TTGCTACACGAATCCAGCCCTGCTTCCAGACCTTGCTCAGACATCTGTCT  748
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGCTACACGAACCCAGCCCTGCTTCCAGACCTTGCTCAGACATCTGTCT  740

seq1  CTACAGAAGTCTTTCTTGATTTGCATTCTGCCTAATCTGAACTCCGTTGT  798
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CTACAGAAGTCTTTCTTGATTTGCATCCTGCCTAATCTGAACTCCTTTGT  790

seq1  GCTTATATTTCTCATGCCATCATCTTTATGTGTGCTTAGGTATGCATGTG  848
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTATATTTCTCATGCCATCGTCTTTATGTGTGCTTAGGTATGCATGTG  840

seq1  GAGGCCAGAGGTTGATGCTTCTCAATTTCTCTGTACTTTATTTTATGATT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGCCAGAGGTTGATGCTTCTCAATTTCTCTCTACTTTATTTTATGATT  890

seq1  ATATATGCATATATGTGTCATGTCCACCTAGGTGCCTGCTAAGGCCAGAA  948
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATGTATATATGTGTCATGTCCACCTAGGTGCCTGCCAAGGCCAGAA  940

seq1  AATGGAGTTAGAGCCCTGGGAGCTTGAGTTACAGGTGCTTGTGAGCTGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTTAGAGCCCTGGGAGCTTGAGTTACAGGTGCTTGTGAGCTGCC  990

seq1  TGATATGGGTCTTGGGAACTGA  1020
      ||||||||||||||||||||||
seq2  TGATATGGGTCTTGGGAACTGA  1012