BAC Information

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BAC

Clone NameB6Ng01-131E17
Chromosome1 (Build37)
Map Location 180,288,459 - 180,464,073
singlet/doubletdoublet
Overlap geneEfcab2, D230039L06Rik
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Downstream geneKif26b, Smyd3, LOC666354, LOC433941, Tfb2m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E17.bB6Ng01-131E17.g
ACCDH932387DH932388
length1,197999
definitionDH932387|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E17, 5' end.DH932388|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,462,869 - 180,464,073)(180,288,459 - 180,289,463)
sequence
gaattcagagcagaggtttcactttctgggttttgagataacctgcaaca
atcaggtttatagctcaatctgcctcttcttttgatgccctctctaggaa
actcaagttactactatcaccatctttctctcttcttgcttctgtcaaca
ttatcatcctttacccggttacccagctacatccaagtctcataatggcc
taacatgaagccctatcctccagtgtcatagaactaactggtctacccgg
aagcccagagcccagtcttccagacgccatacactctcgggcatgctgag
actcagagcaactcttggaacaccaaaggcagtcttcaatctgaggggac
atccagatgcccctccagaggctgtctaacacttcatcaccccacctcat
ccagctgtccccaaaataaatggagggcaactctctagagcttgctacca
gcaatagagcatgttgagggaaatcatctgacagcagagggatgaagaag
tgaactcatcagattagaacgtgaccgtgggcattacaacatcctgattc
tataaaccttaaacccccgggatattgtctactagataaatgtcaatttc
atctctctctcggaagaaaagaagcactttttgaacctcgccttgtgaca
gacactccaaccatctgaaccattggttttccattgctgtgttgatggga
acgttaagaacgggatgagattctaaagaattaatttttaaaaacacatt
gtattaaaatgtgaaactgactcactaagattgcaaaataaatcggtcgg
aaaaaaaaaagccaaacccattcttaagtaacgaatttcagggcctgctc
ttctgcctctgacttctgaatgactatgcagaaggtttttcatactacct
aatacgatttaatactctatttgtgaaaatattccccaaatatggttaag
catcttaagtgaattatgaaaatgacttttgctaattatccctcaaaaac
attgtctttatcttcccagacttcttgttcttccgagcgaattacacgtt
ggggtcacaatgacatccttattctactgaaatttaactctttcaacctg
cagctacgaggttccgctcataaatcagcacttacagtttgtctcataag
ctagcacttagaaaaagcctgtctcctttggaacggatcccacgcag
gaattcctggtgaacggggagagcctgaagacagtagcgctgaaagcaga
aactgcaacaacaagcaagcagagaggcctgtgggtaaggaagcaagaag
tgagcgggaaaaccgagctgtgaagaccacattagcaatgaccttgaata
actcttgtgaaccttctccaagaatatgttcaaattactcccatgggcct
tggctggcttgaaactggctggtctcaaagccaaagacatccgtctgcct
cagcttcctgagtgggaaggataaaggtgtgtccctatgagcttcttgga
atgttgttaagaagaagaagcaccaatcagcctggaagggtagtacatac
ccataaccccagcatcccctgcatcggggtggtagaggtcgaaagatcag
gagttcaaggtcattctcagctacttagtataaggttacctggggctcca
tcaaaccctgtcaaaaggaagagagggtaaaaaaggaagaaagaagataa
ctactctcatagaagcttgggaatgctaacaccagtcaaccctcttagca
atgaacttgagcctctgggcagcctcaaagagttctccaagaaaagaaga
gatgaaaacaactcctgaatttcccaagtaatttcccagctaatatccac
caaactcgtgctccttggagcagatatatcttgatctcgattctggcctt
cagtctcgactcagattccagaattttattgtgaaaggtttggctccagt
tataaaggtttagtcgtaaaaattagattttgttatttatttttttttat
gaatccaggtcttactatgtagccttggctggtctcaaactcagagatcc
atctgtgtctgcctttcgagtgctggaattaaggcgtgcaccacacactc
agcagatgttggtagagatgaacccagggttttgagcatggtagtttaag
agacccaagactgcatatatatttacttctgacagcattgattatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180462869_180464073
seq2: B6Ng01-131E17.b_46_1242 (reverse)

seq1  CTGCGTGGTGGGTCCTGTCCAATGGAGACAAGGCATTTCTTCTCAGTGCT  50
      |||||||  || |||  ||||| |||||| ||||  || |||| ||||||
seq2  CTGCGTG--GGATCCGTTCCAAAGGAGAC-AGGC--TTTTTCTAAGTGCT  45

seq1  AGCTTTATGAG-CAAACTGTAAGTGCTGATTTATGAGCGGAACCTCTGTA  99
      ||| ||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AGC-TTATGAGACAAACTGTAAGTGCTGATTTATGAGCGGAACCTC-GTA  93

seq1  GCCTGCAGGCCCTGAAAGAGTTAAGTTTCAGTAGAATAAGGGATGTCATT  149
      | |||||||   |||||||||||| |||||||||||||| ||||||||||
seq2  G-CTGCAGG--TTGAAAGAGTTAAATTTCAGTAGAATAA-GGATGTCATT  139

seq1  GTGACCCCAACGTGTAATTCGCTCCGGAGAACAAG-AGTCTGGGAAGATA  198
      |||||||||||||||||||||||| | |||||||| ||||||||||||||
seq2  GTGACCCCAACGTGTAATTCGCTCGGAAGAACAAGAAGTCTGGGAAGATA  189

seq1  AAGAC-ATGTTTTTGAGGGATAATTAGCAAAAGTCATTTTCATAATTCAC  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATGTTTTTGAGGGATAATTAGCAAAAGTCATTTTCATAATTCAC  239

seq1  TTAAGATGCTTAACCATATTTGGGGAATATTTTCACAAATAGAGTATTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGCTTAACCATATTTGGGGAATATTTTCACAAATAGAGTATTAA  289

seq1  ATCGTATTAGGTAGTATGAAAAACCTTCTGCATAGTCATTCAGAAGTCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTATTAGGTAGTATGAAAAACCTTCTGCATAGTCATTCAGAAGTCAG  339

seq1  AGGCAGAAGAGCAGGCCCTGAAATTCGTTACTTAAGAATGGGTTTGGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGAGCAGGCCCTGAAATTCGTTACTTAAGAATGGGTTTGGCTT  389

seq1  TTTTTTTTCCGACCGATTTATTTTGCAATCTTAGTGAGTCAGTTTCACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCGACCGATTTATTTTGCAATCTTAGTGAGTCAGTTTCACAT  439

seq1  TTTAATACAATGTGTTTTTAAAAATTAATTCTTTAGAATCTCATCCCGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACAATGTGTTTTTAAAAATTAATTCTTTAGAATCTCATCCCGTT  489

seq1  CTTAACGTTCCCATCAACACAGCAATGGAAAACCAATGGTTCAGATGGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGTTCCCATCAACACAGCAATGGAAAACCAATGGTTCAGATGGTT  539

seq1  GGAGTGTCTGTCACAAGGCGAGGTTCAAAAAGTGCTTCTTTTCTTCCGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCTGTCACAAGGCGAGGTTCAAAAAGTGCTTCTTTTCTTCCGAG  589

seq1  AGAGAGATGAAATTGACATTTATCTAGTAGACAATATCCCGGGGGTTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGAAATTGACATTTATCTAGTAGACAATATCCCGGGGGTTTAA  639

seq1  GGTTTATAGAATCAGGATGTTGTAATGCCCACGGTCACGTTCTAATCTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAGAATCAGGATGTTGTAATGCCCACGGTCACGTTCTAATCTGA  689

seq1  TGAGTTCACTTCTTCATCCCTCTGCTGTCAGATGATTTCCCTCAACATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCACTTCTTCATCCCTCTGCTGTCAGATGATTTCCCTCAACATGC  739

seq1  TCTATTGCTGGTAGCAAGCTCTAGAGAGTTGCCCTCCATTTATTTTGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTGGTAGCAAGCTCTAGAGAGTTGCCCTCCATTTATTTTGGGG  789

seq1  ACAGCTGGATGAGGTGGGGTGATGAAGTGTTAGACAGCCTCTGGAGGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGATGAGGTGGGGTGATGAAGTGTTAGACAGCCTCTGGAGGGGC  839

seq1  ATCTGGATGTCCCCTCAGATTGAAGACTGCCTTTGGTGTTCCAAGAGTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATGTCCCCTCAGATTGAAGACTGCCTTTGGTGTTCCAAGAGTTG  889

seq1  CTCTGAGTCTCAGCATGCCCGAGAGTGTATGGCGTCTGGAAGACTGGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCTCAGCATGCCCGAGAGTGTATGGCGTCTGGAAGACTGGGCT  939

seq1  CTGGGCTTCCGGGTAGACCAGTTAGTTCTATGACACTGGAGGATAGGGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCCGGGTAGACCAGTTAGTTCTATGACACTGGAGGATAGGGCT  989

seq1  TCATGTTAGGCCATTATGAGACTTGGATGTAGCTGGGTAACCGGGTAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAGGCCATTATGAGACTTGGATGTAGCTGGGTAACCGGGTAAAG  1039

seq1  GATGATAATGTTGACAGAAGCAAGAAGAGAGAAAGATGGTGATAGTAGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAATGTTGACAGAAGCAAGAAGAGAGAAAGATGGTGATAGTAGTA  1089

seq1  ACTTGAGTTTCCTAGAGAGGGCATCAAAAGAAGAGGCAGATTGAGCTATA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTTTCCTAGAGAGGGCATCAAAAGAAGAGGCAGATTGAGCTATA  1139

seq1  AACCTGATTGTTGCAGGTTATCTCAAAACCCAGAAAGTGAAACCTCTGCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATTGTTGCAGGTTATCTCAAAACCCAGAAAGTGAAACCTCTGCT  1189

seq1  CTGAATTC  1205
      ||||||||
seq2  CTGAATTC  1197

seq1: chr1_180288459_180289463
seq2: B6Ng01-131E17.g_69_1066

seq1  GAATTCCTGGTGAACGGGGAGAGCCTGAAGACAGTAGCGCTGAAAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGAACGGGGAGAGCCTGAAGACAGTAGCGCTGAAAGCAGA  50

seq1  AACTGCAACAACAAGCAAGCAGAGAGGCCTGTGGGTAAGGAAGCAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAACAACAAGCAAGCAGAGAGGCCTGTGGGTAAGGAAGCAAGAAG  100

seq1  TGAGCGGGAAAACCGAGCTGTGAAGACCACATTAGCAATGACCTTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGGGAAAACCGAGCTGTGAAGACCACATTAGCAATGACCTTGAATA  150

seq1  ACTCTTGTGAACCTTCTCCAAGAATATGTTCAAATTACTCCCATGGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTGAACCTTCTCCAAGAATATGTTCAAATTACTCCCATGGGCCT  200

seq1  TGGCTGGCTTGAAACTGGCTGGTCTCAAAGCCAAAGACATCCGTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCTTGAAACTGGCTGGTCTCAAAGCCAAAGACATCCGTCTGCCT  250

seq1  CAGCTTCCTGAGTGGGAAGGATAAAGGTGTGTCCCTATGAGCTTCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTGAGTGGGAAGGATAAAGGTGTGTCCCTATGAGCTTCTTGGA  300

seq1  ATGTTGTTAAGAAGAAGAAGCACCAATCAGCCTGGAAGGGTAGTACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTAAGAAGAAGAAGCACCAATCAGCCTGGAAGGGTAGTACATAC  350

seq1  CCATAACCCCAGCATCCCCTGCATCGGGGTGGTAGAGGTCGAAAGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCCCAGCATCCCCTGCATCGGGGTGGTAGAGGTCGAAAGATCAG  400

seq1  GAGTTCAAGGTCATTCTCAGCTACTTAGTATAAGGTTACCTGGGGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGTCATTCTCAGCTACTTAGTATAAGGTTACCTGGGGCTCCA  450

seq1  TCAAACCCTGTCAAAAGGAAGAGAGGGTAAAAAAGGAAGAAAGAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCTGTCAAAAGGAAGAGAGGGTAAAAAAGGAAGAAAGAAGATAA  500

seq1  CTACTCTCATAGAAGCTTGGGAATGCTAACACCAGTCAACCCTCTTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCATAGAAGCTTGGGAATGCTAACACCAGTCAACCCTCTTAGCA  550

seq1  ATGAACTTGAGCCTCTGGGCAGCCTCAAAGAGTTCTCCAAGAAAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGAGCCTCTGGGCAGCCTCAAAGAGTTCTCCAAGAAAAGAAGA  600

seq1  GATGAAAACAACTCCTGAATTTCCCAAGTAATTTCCCAGCTAATATCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACAACTCCTGAATTTCCCAAGTAATTTCCCAGCTAATATCCAC  650

seq1  CAAACTCGTGCTCCTTGGAGCAGATATATCTTGATCTCGATTCTGGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCGTGCTCCTTGGAGCAGATATATCTTGATCTCGATTCTGGCCTT  700

seq1  CAGTCTCGACTCAGATTCCAGAATTTTATTGTGAAAGGTTTGGCTCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCGACTCAGATTCCAGAATTTTATTGTGAAAGGTTTGGCTCCAGT  750

seq1  TATAAAGGTTTAGTCGTAAAAATTAGATTTTGTTATTTA-TTTTTTTTAT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATAAAGGTTTAGTCGTAAAAATTAGATTTTGTTATTTATTTTTTTTTAT  800

seq1  GAATCCAGGTCTTACTATGTAGCCTTGGCTGGTCTCAAACTCAGAGATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGGTCTTACTATGTAGCCTTGGCTGGTCTCAAACTCAGAGATCC  850

seq1  ATCTGTGTCTGCCTTCCGAGTGCTGGAATTAAAGGCGTGCACCACCACAC  899
      ||||||||||||||| |||||||||||||| ||||||||||||| |||||
seq2  ATCTGTGTCTGCCTTTCGAGTGCTGGAATT-AAGGCGTGCACCA-CACAC  898

seq1  TCAGCAGATGGTGGTAGAGATGGAACCCAGGGTTTTGAGCATGGTAGGTT  949
      |||||||||| |||||||||| ||||||||||||||||||||||||| ||
seq2  TCAGCAGATGTTGGTAGAGAT-GAACCCAGGGTTTTGAGCATGGTAGTTT  947

seq1  TCAGAGAGACACAAGACTGCATATATATTTACTTCTGACAAGCATTTGAT  999
          |||||| |||||||||||||||||||||||||||| |||| |||||
seq2  ---AAGAGACCCAAGACTGCATATATATTTACTTCTGAC-AGCA-TTGAT  992

seq1  TATTTA  1005
      ||||||
seq2  TATTTA  998