BAC Information

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BAC

Clone NameB6Ng01-131E22
Chromosome1 (Build37)
Map Location 83,324,642 - 83,446,066
singlet/doubletdoublet
Overlap gene4930544G21Rik
Upstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E22.bB6Ng01-131E22.g
ACCDH932397DH932398
length1,169660
definitionDH932397|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E22, 5' end.DH932398|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,444,941 - 83,446,066)(83,324,642 - 83,325,301)
sequence
gaattctacaatatacaaggtaagccattgtgagcagtgtgtaaatttat
tgttctgataggctaccactctggtgcaaagatttttttttctttaagaa
tacaataatatattattatttattttaaattcccttctaacttttttaaa
taggtcaattacatataaaattcaagaaaagaaaaaatattatctaactt
catttcttctctaccgtaatacatctattatcctcatttttttttcaaat
gtggcagacagtattaaaagaatgctcctgtccagttgtccagacatcac
gcatataacaagcagagtatacctcctatagtgtcaattattgctcccag
ccctttcagcattctcttgctcccccacttctagcttcaagtgagaaagg
gaattaagggaaagtatgaaatttattttccaactactcatggagctact
ggagtctacacttaatattcagtgtcctttgattgacatatgccaaaata
tgtgccttttatggaatccacagatttcccttgtgttcttctctgcatca
ttttctgtgcagcactatcttctcatttattcctgttccaccatcttgga
atccaacccattgtcttctatactggattattctcattgaaagcaagatt
ttcttttgttaacaaatcagttataggcccggctcaggagggaattgcca
gaacatctacaggagacatcttggttcctggactccactgagactagtct
gtacaggtgagagtgtggacctaagaaggcaacagattctgggacaggtc
ctgtttttgggccttcatcttctgccaggaggcaagtctgaacgccagat
atctgtgcaccttccctgaaagaggagagcctgcctgcagagagtgatct
gaccactgaaactcacgagagagctagtctcccaggtctgctggtagaga
ataacagaatcatgagaggaacaaactctaaccagagacaactataacaa
ctgacttcagagttgagtcaattggtggtgaaaggtaaacgtaatatcta
ctacagaaccaagaccactcaccatcatcggaacccagcaatccacctca
gccagtccagggcatccccacacacctaaaacctagaacccgaattaaag
gcatatttcaggattgatg
gaattctgaagttgaactccgtattttagaacccctaactcttttttgtt
tttcatttgttttttgctttttcttcctgcaaaatttgcaattctctgca
tagttgttgtttacaagatgctatttcttgggcacactatgtgctttact
catgaaaggacacagttccaggtctattaggggagtgtgcggatctctga
gaaccagatccctagtaatgtaagaaaagttagcaaacattgtgaaaaca
ccattttaatccttaaagaatgatctaaaggtcacagagagtacaggtaa
acgtttattcaagagactccactaaaactagcctaaaactgactgtaccc
ttgtagcccagattctgtggtctcttattcacactgggggtagtgcacat
gggcatctgtgtttaggaaagggtgcttcatttattctagggctcccagt
gagagttcctgggtatcactgggagtcagagatcaccagagttctccata
ccctaaagtattaaataaaagatgatacagttattattcaggaaggtcag
aaactgacctttctccatgtatggtgtgcctgtaaggctgaagtattacc
ctagccatgagttaggggaatagtaagactcacatgtcatttcttccatc
tcactggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83444941_83446066
seq2: B6Ng01-131E22.b_99_1219 (reverse)

seq1  CATC-ATCCTGAAATATGCCTTTAAATCTGGGTCTAGGTTTTTGGGTGTG  49
      |||| |||||||||||||||||||| || || |||||| |||| ||||||
seq2  CATCAATCCTGAAATATGCCTTTAATTCGGGTTCTAGG-TTTTAGGTGTG  49

seq1  TTGGGGTGCCCTGGACTGGCTGAGGTGGGTGTGCTGGGTTCTGATGATGG  99
      | ||| |||||||||||||||||||||| | |||||||||| ||||||||
seq2  TGGGGATGCCCTGGACTGGCTGAGGTGGAT-TGCTGGGTTCCGATGATGG  98

seq1  TGAGTGGTCTTGGTTTCTGTTAGTAAGATTATTACGTTTACCTTTCACCA  149
      ||||||||||||| ||||| |||| ||| |||||||||||||||||||||
seq2  TGAGTGGTCTTGG-TTCTG-TAGT-AGA-TATTACGTTTACCTTTCACCA  144

seq1  CCAATTGACTCAACTCTGGAGTCAGTTGTTATAGTTGTCTCTGGTTAGAG  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAATTGACTCAACTCTGAAGTCAGTTGTTATAGTTGTCTCTGGTTAGAG  194

seq1  TTTGTTCCTCTCATGATTCTGTTATTCTCTACCAGCAGACCTGGGAGACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTCTCATGATTCTGTTATTCTCTACCAGCAGACCTGGGAGACT  244

seq1  AGCTCTCTCCTGAGTTTCAGTGGTCAGATCACTCTCTGCAGGCAGGCTCT  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTCGTGAGTTTCAGTGGTCAGATCACTCTCTGCAGGCAGGCTCT  294

seq1  CCTCTTTCAGGGAAGGTGCACAGATATCTGGCGTTCAGACTTGCCTCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCAGGGAAGGTGCACAGATATCTGGCGTTCAGACTTGCCTCCTG  344

seq1  GCAGAAGATGAAGGCCCAAAAACAGGACCTGTCCCAGAATCTGTTGCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATGAAGGCCCAAAAACAGGACCTGTCCCAGAATCTGTTGCCTT  394

seq1  CTTAGGTCCACACTCTCACCTGTACAGACTAGTCTCAGTGGAGTCCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCCACACTCTCACCTGTACAGACTAGTCTCAGTGGAGTCCAGGA  444

seq1  ACCAAGATGTCTCCTGTAGATGTTCTGGCAATTCCCTCCTGAGCCGGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATGTCTCCTGTAGATGTTCTGGCAATTCCCTCCTGAGCCGGGCC  494

seq1  TATAACTGATTTGTTAACAAAAGAAAATCTTGCTTTCAATGAGAATAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGATTTGTTAACAAAAGAAAATCTTGCTTTCAATGAGAATAATC  544

seq1  CAGTATAGAAGACAATGGGTTGGATTCCAAGATGGTGGAACAGGAATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGAAGACAATGGGTTGGATTCCAAGATGGTGGAACAGGAATAAA  594

seq1  TGAGAAGATAGTGCTGCACAGAAAATGATGCAGAGAAGAACACAAGGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGATAGTGCTGCACAGAAAATGATGCAGAGAAGAACACAAGGGAA  644

seq1  ATCTGTGGATTCCATAAAAGGCACATATTTTGGCATATGTCAATCAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGATTCCATAAAAGGCACATATTTTGGCATATGTCAATCAAAGG  694

seq1  ACACTGAATATTAAGTGTAGACTCCAGTAGCTCCATGAGTAGTTGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATATTAAGTGTAGACTCCAGTAGCTCCATGAGTAGTTGGAAAA  744

seq1  TAAATTTCATACTTTCCCTTAATTCCCTTTCTCACTTGAAGCTAGAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCATACTTTCCCTTAATTCCCTTTCTCACTTGAAGCTAGAAGTG  794

seq1  GGGGAGCAAGAGAATGCTGAAAGGGCTGGGAGCAATAATTGACACTATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAAGAGAATGCTGAAAGGGCTGGGAGCAATAATTGACACTATAG  844

seq1  GAGGTATACTCTGCTTGTTATATGCGTGATGTCTGGACAACTGGACAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATACTCTGCTTGTTATATGCGTGATGTCTGGACAACTGGACAGGA  894

seq1  GCATTCTTTTAATACTGTCTGCCACATTTGAAAAAAAAATGAGGATAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTTAATACTGTCTGCCACATTTGAAAAAAAAATGAGGATAATA  944

seq1  GATGTATTACGGTAGAGAAGAAATGAAGTTAGATAATATTTTTTCTTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTACGGTAGAGAAGAAATGAAGTTAGATAATATTTTTTCTTTTC  994

seq1  TTGAATTTTATATGTAATTGACCTATTTAAAAAAGTTAGAAGGGAATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTATATGTAATTGACCTATTTAAAAAAGTTAGAAGGGAATTTA  1044

seq1  AAATAAATAATAATATATTATTGTATTCTTAAAGAAAAAAAAATCTTTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATAATATATTATTGTATTCTTAAAGAAAAAAAAATCTTTGC  1094

seq1  ACCAGAGTGGTAGCCTATCAGAACAAT  1126
      |||||||||||||||||||||||||||
seq2  ACCAGAGTGGTAGCCTATCAGAACAAT  1121

seq1: chr1_83324642_83325301
seq2: B6Ng01-131E22.g_70_729

seq1  GAATTCTGAAGTTGAACTCCGTATTTTAGAACCCCTAACTCTTTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGTTGAACTCCGTATTTTAGAACCCCTAACTCTTTTTTGTT  50

seq1  TTTCATTTGTTTTTTGCTTTTTCTTCCTGCAAAATTTGCAATTCTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTTTTTTGCTTTTTCTTCCTGCAAAATTTGCAATTCTCTGCA  100

seq1  TAGTTGTTGTTTACAAGATGCTATTTCTTGGGCACACTATGTGCTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTGTTTACAAGATGCTATTTCTTGGGCACACTATGTGCTTTACT  150

seq1  CATGAAAGGACACAGTTCCAGGTCTATTAGGGGAGTGTGCGGATCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGACACAGTTCCAGGTCTATTAGGGGAGTGTGCGGATCTCTGA  200

seq1  GAACCAGATCCCTAGTAATGTAAGAAAAGTTAGCAAACATTGTGAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGATCCCTAGTAATGTAAGAAAAGTTAGCAAACATTGTGAAAACA  250

seq1  CCATTTTAATCCTTAAAGAATGATCTAAAGGTCACAGAGAGTACAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAATCCTTAAAGAATGATCTAAAGGTCACAGAGAGTACAGGTAA  300

seq1  ACGTTTATTCAAGAGACTCCACTAAAACTAGCCTAAAACTGACTGTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTATTCAAGAGACTCCACTAAAACTAGCCTAAAACTGACTGTACCC  350

seq1  TTGTAGCCCAGATTCTGTGGTCTCTTATTCACACTGGGGGTAGTGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCCAGATTCTGTGGTCTCTTATTCACACTGGGGGTAGTGCACAT  400

seq1  GGGCATCTGTGTTTAGGAAAGGGTGCTTCATTTATTCTAGGGCTCCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTGTGTTTAGGAAAGGGTGCTTCATTTATTCTAGGGCTCCCAGT  450

seq1  GAGAGTTCCTGGGTATCACTGGGAGTCAGAGATCACCAGAGTTCTCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCCTGGGTATCACTGGGAGTCAGAGATCACCAGAGTTCTCCATA  500

seq1  CCCTAAAGTATTAAATAAAAGATGATACAGTTATTATTCAGGAAGGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGTATTAAATAAAAGATGATACAGTTATTATTCAGGAAGGTCAG  550

seq1  AAACTGACCTTTCTCCATGTATGGTGTGCCTGTAAGGCTGAAGTATTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCTTTCTCCATGTATGGTGTGCCTGTAAGGCTGAAGTATTACC  600

seq1  CTAGCCATGAGTTAGGGGAATAGTAAGACTCACATGTCATTTCTTCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATGAGTTAGGGGAATAGTAAGACTCACATGTCATTTCTTCCATC  650

seq1  TCACTGGAAG  660
      ||||||||||
seq2  TCACTGGAAG  660