BAC Information

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BAC

Clone NameB6Ng01-131I17
Chromosome1 (Build37)
Map Location 140,627,243 - 140,774,172
singlet/doubletdoublet
Overlap geneLhx9, 2310009B15Rik, 1700019P21Rik
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream geneLOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131I17.bB6Ng01-131I17.g
ACCDH932576DH932577
length8061,103
definitionDH932576|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I17, 5' end.DH932577|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,773,367 - 140,774,172)(140,627,243 - 140,628,360)
sequence
gaattcaatgacggttttagggaaatttactaaagagattgccaaataaa
attatagttattttaccatcttagtatactgtgtctcagaacaatggcct
atggaatgctgatgtgttgggagagtccaaagctgattcttgaccatagc
gtattagcagaaaactcagttgatgatgtaattcacaactgggctttact
gctatcacatattcatccgttcactgggccaaattacttctctctctctc
tctctctctctctctctctctctcacacacacacacagcatttttcagca
tttcttatgtactcataccatgacagattaaaaaataagttaagaccatc
tttatctttaaagacccaacagtaaaggagcaggaaaaggaaaagaaaat
atcataaacaaaataatatgagaggtgagcacaaatgtaattgtgctcta
gatattaggggagtggggagctaaagtgaacaagtcctgtagaaaagact
ggaaaccatgagcagagtgagctatcagagaagctaccagaacagggtac
atacaggctgggacctaaggaaatacgggtgcagtaacgtcacaaataaa
actgcaaaacacgtggtgatgaccctgatgggagctcgtgtgtgtgaaga
gttcagcatctctcagtcaactaagtatcacgtgagtatgctgtccactc
aagtcatctgagagacttgaagcagggaatggtggacctatgccagactg
cgcttcatcacaaccatggagagagaggaggggacagggggaggagggat
gaaggg
gaattcaaggcctgtctggaaagcacagcgagataccatctcaaaagtct
aaaataagagctggggctttagctcagagggtagaatgattgcctagcat
gcacaaggcctgagtttgacacccagcaccacttaaaactggacttggtg
gcacatgcctgtagtagagacaggaggtttctaagttcaaagtcatcccc
aaccacatagcaagttcaaggttagcctggactacaggagatcctgtctc
aaaaaataaaataaaataattaaaacatcagtagtaattataatggtgca
ttctctgcttttcagctcattttgctttgctaatagggactgtttgtgaa
atctttgcaatcgtaaattcatagcactcactcagataactctgaggaca
gaaaatcaactctgctcaaacactagccaacatagaatgctctgccgcga
ttttgccgcccactgacaggcagagagttgcacggtttgtttacattgaa
tgctcagttagcttgaaaaatggcagtttgagcttcttggtgcttagtaa
cccgtatgttttatgagacgaggtcagaagaagaggggaagttcaaaaca
ttactctctggacgcagcatagtaccaggagcaaaagtgagcctcatctt
gttatttcactggcaataaatttaagtgctgggcgtttcccgggagcagc
cattgggaagcacgccccccatctgaagtcatccgttgactacggctttt
cccttaccatcacagatattaattataaaggcaaacattcatttgaacag
ttatgtcttcttttacgatttttttcttagtcaaactccatcaattttga
caggaaacttttataaaacatatcatcctcacatgtctgccaaattagct
tgttgctatgtatcaactaaaatattacttaactgttataccacactcaa
aaacagatgggactgatgcaagatgtggccgcagaaactctggggacata
actgattttgttgtcctatgaagagctatgggaataatcttcctcccagt
cttgcccaagagaaactttttttttctgtttatgaaagagtgtggaatcc
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140773367_140774172
seq2: B6Ng01-131I17.b_42_847 (reverse)

seq1  CCCTTCATCCCTCCTCCCCCTGTCCCCTCCTCTCTCTCCGTGGTTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTTCATCCCTCCTCCCCCTGTCCCCTCCTCTCTCTCCATGGTTGTGAT  50

seq1  GAAGCGCAGTCTGGCATAGGTCCACCATTCCCTGCTTCAAGTCTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGCAGTCTGGCATAGGTCCACCATTCCCTGCTTCAAGTCTCTCAGA  100

seq1  TGACTTGAGTGGACAGCATACTCACGTGATACTTAGTTGACTGAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAGTGGACAGCATACTCACGTGATACTTAGTTGACTGAGAGATG  150

seq1  CTGAACTCTTCACACACACGAGCTCCCATCAGGGTCATCACCACGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTTCACACACACGAGCTCCCATCAGGGTCATCACCACGTGTTT  200

seq1  TGCAGTTTTATTTGTGACGTTACTGCACCCGTATTTCCTTAGGTCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTATTTGTGACGTTACTGCACCCGTATTTCCTTAGGTCCCAGC  250

seq1  CTGTATGTACCCTGTTCTGGTAGCTTCTCTGATAGCTCACTCTGCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTACCCTGTTCTGGTAGCTTCTCTGATAGCTCACTCTGCTCATG  300

seq1  GTTTCCAGTCTTTTCTACAGGACTTGTTCACTTTAGCTCCCCACTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGTCTTTTCTACAGGACTTGTTCACTTTAGCTCCCCACTCCCCT  350

seq1  AATATCTAGAGCACAATTACATTTGTGCTCACCTCTCATATTATTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAGAGCACAATTACATTTGTGCTCACCTCTCATATTATTTTGTT  400

seq1  TATGATATTTTCTTTTCCTTTTCCTGCTCCTTTACTGTTGGGTCTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTTTCTTTTCCTTTTCCTGCTCCTTTACTGTTGGGTCTTTAAA  450

seq1  GATAAAGATGGTCTTAACTTATTTTTTAATCTGTCATGGTATGAGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGATGGTCTTAACTTATTTTTTAATCTGTCATGGTATGAGTACAT  500

seq1  AAGAAATGCTGAAAAATGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAATGCTGAAAAATGCTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGA  550

seq1  GAGAGAGAGAGAGAGAGAAGTAATTTGGCCCAGTGAACGGATGAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAAGTAATTTGGCCCAGTGAACGGATGAATATGT  600

seq1  GATAGCAGTAAAGCCCAGTTGTGAATTACATCATCAACTGAGTTTTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGTAAAGCCCAGTTGTGAATTACATCATCAACTGAGTTTTCTGC  650

seq1  TAATACGCTATGGTCAAGAATCAGCTTTGGACTCTCCCAACACATCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACGCTATGGTCAAGAATCAGCTTTGGACTCTCCCAACACATCAGCA  700

seq1  TTCCATAGGCCATTGTTCTGAGACACAGTATACTAAGATGGTAAAATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGGCCATTGTTCTGAGACACAGTATACTAAGATGGTAAAATAAC  750

seq1  TATAATTTTATTTGGCAATCTCTTTAGTAAATTTCCCTAAAACCGTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTATTTGGCAATCTCTTTAGTAAATTTCCCTAAAACCGTCATT  800

seq1  GAATTC  806
      ||||||
seq2  GAATTC  806

seq1: chr1_140627243_140628360
seq2: B6Ng01-131I17.g_70_1172

seq1  GAATTCAAGGCCTGTCTGGAAAGCACAGCGAGATACCATCTCAAAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTGTCTGGAAAGCACAGCGAGATACCATCTCAAAAGTCT  50

seq1  AAAATAAGAGCTGGGGCTTTAGCTCAGAGGGTAGAATGATTGCCTAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGAGCTGGGGCTTTAGCTCAGAGGGTAGAATGATTGCCTAGCAT  100

seq1  GCACAAGGCCTGAGTTTGACACCCAGCACCACTTAAAACTGGACTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGCCTGAGTTTGACACCCAGCACCACTTAAAACTGGACTTGGTG  150

seq1  GCACATGCCTGTAGTAGAGACAGGAGGTTTCTAAGTTCAAAGTCATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCTGTAGTAGAGACAGGAGGTTTCTAAGTTCAAAGTCATCCCC  200

seq1  AACCACATAGCAAGTTCAAGGTTAGCCTGGACTACAGGAGATCCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATAGCAAGTTCAAGGTTAGCCTGGACTACAGGAGATCCTGTCTC  250

seq1  AAAAAATAAAATAAAATAATTAAAACATCAGTAGTAATTATAATGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATAAAATAATTAAAACATCAGTAGTAATTATAATGGTGCA  300

seq1  TTCTCTGCTTTTCAGCTCATTTTGCTTTGCTAATAGGGACTGTTTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTTTCAGCTCATTTTGCTTTGCTAATAGGGACTGTTTGTGAA  350

seq1  ATCTTTGCAATCGTAAATTCATAGCACTCACTCAGATAACTCTGAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCAATCGTAAATTCATAGCACTCACTCAGATAACTCTGAGGACA  400

seq1  GAAAATCAACTCTGCTCAAACACTAGCCAACATAGAATGCTCTGCCGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAACTCTGCTCAAACACTAGCCAACATAGAATGCTCTGCCGCGA  450

seq1  TTTTGCCGCCCACTGACAGGCAGAGAGTTGCACGGTTTGTTTACATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCGCCCACTGACAGGCAGAGAGTTGCACGGTTTGTTTACATTGAA  500

seq1  TGCTCAGTTAGCTTGAAAAATGGCAGTTTGAGCTTCTTGGTGCTTAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTAGCTTGAAAAATGGCAGTTTGAGCTTCTTGGTGCTTAGTAA  550

seq1  CCCGTATGTTTTATGAGACGAGGTCAGAAGAAGAGGGGAAGTTCAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATGTTTTATGAGACGAGGTCAGAAGAAGAGGGGAAGTTCAAAACA  600

seq1  TTACTCTCTGGACGCAGCATAGTACCAGGAGCAAAAGTGAGCCTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTGGACGCAGCATAGTACCAGGAGCAAAAGTGAGCCTCATCTT  650

seq1  GTTATTTCACTGGCAATAAATTTAAGTGCTGGGCGTTTCCCGGGAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCACTGGCAATAAATTTAAGTGCTGGGCGTTTCCCGGGAGCAGC  700

seq1  CATTGGGAAGCACGCCCCCCATCTGAAGTCATCCGTTGACTACGGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAGCACGCCCCCCATCTGAAGTCATCCGTTGACTACGGCTTTT  750

seq1  CCCTTACCATCACAGATATTAATTATAAAGGCAAACATTCATTTGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCATCACAGATATTAATTATAAAGGCAAACATTCATTTGAACAG  800

seq1  TTATGTCTTCTTTTACGATTTTTTTCTTAGTCAAACTCCATCAATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTTCTTTTACGATTTTTTTCTTAGTCAAACTCCATCAATTTTGA  850

seq1  CAGGCAAACTTTTATAAAAACATATCATCCTCACATGTCTGCCAAATTAG  900
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGG-AAACTTTTAT-AAAACATATCATCCTCACATGTCTGCCAAATTAG  898

seq1  CTTGTTGCTATGTATCAACTTAAAATATTACTTTAACTGTTATACCAACA  950
      ||||||||||||||||||| ||||||||||| |||||||||||||| |||
seq2  CTTGTTGCTATGTATCAAC-TAAAATATTAC-TTAACTGTTATACC-ACA  945

seq1  CTCAAAAACAGATGGGACTGATGCAAGATGGTGCCGCGAGAAACTCTGGG  1000
      ||||||||||||||||||||||||||||||  ||||| ||||||||||||
seq2  CTCAAAAACAGATGGGACTGATGCAAGATGTGGCCGC-AGAAACTCTGGG  994

seq1  GACATAAACTGATTTTGTTGTCTTAATGAGAGCTATTTGGGAATAATTCT  1050
      ||||| |||||||||||||||| ||   |||||||  ||||||||||  |
seq2  GACAT-AACTGATTTTGTTGTCCTATGAAGAGCTA--TGGGAATAATCTT  1041

seq1  TCTCTCAAGTTCTTGCCACAAAGGAGAACATTTTTTTTTTCTGTTTATAG  1100
       ||| ||   ||||||| |||  ||||| | ||||||||||||||||| |
seq2  CCTCCCA--GTCTTGCC-CAA--GAGAA-ACTTTTTTTTTCTGTTTAT-G  1084

seq1  AAAGTGTG-GAAATCCTGA  1118
      |||| ||| | ||||||||
seq2  AAAGAGTGTGGAATCCTGA  1103