BAC Information

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BAC

Clone NameB6Ng01-131K09
Chromosome11 (Build37)1 (Build37)
Map Location 79,642,788 - 79,643,892172,802,246 - 172,802,566
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131K09.bB6Ng01-131K09.g
ACCDH932652DH932653
length1,103484
definitionDH932652|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K09, 5' end.DH932653|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,642,788 - 79,643,892)(172,802,246 - 172,802,566)
sequence
gaattcactatctagcccaaaagtacaaattgtactaggcaaagtaaggc
tctagcaacatagagttctgagtctaggaggtcctgggccagtctgcctc
tctcctagaacccagcacccctcttcccataacataggagtctgactact
taactacaaaaagcaatcatgaacatgatcgagggtttcagtgcacgcat
gtaagctgcccaatgatacacagatgtgctcagctggtacctactcctcc
aagttggtaccagggatccagatgtggtcagtgtttcttaagtagcatcc
ttagtaggtcacatctaccgccaacgtcccgagacaactactgcatcagt
tcctttccttgctgctgaggaggagtgcctggcagaagcaacttaaggga
gaagggttgacctcagctcatgggtgaggaacgccatccacaggcaggaa
gaggcattcaagagaggctgtctgtggcagtgagagcctgcaattgcctc
ctcacggctatgaggatcaagaagcagggaggttgaggccagaatcaaga
aaaaaaaaatgtcaccttcaagacccaccctggcaacctacttttgccac
aactacatcactagcaagaacaaagtgttcaaactcatggcctggaggca
ggggtgggggcgggaggtgtatttcacatttaaactataaccacctcgtg
ctggctgcattgcagaggagggagaaaggccatgcaagccacatccaccc
ctatttacctaggggtgctgaggatcaaaccgactgccttgcccacacta
ggtgagtgtctaccactgagttacaccccaagccttacagcccctcttaa
aagcctctgcccattctaatgacttctgatggcactctaacttgctagaa
ccgtgcccgctggttctggtggctgcaaggggttacctgcctacttctgc
agtaggccgttacctccctcaccatgagaataagttggctgagaatacat
taaagtatacttggagcccagattggagtttccagcccagcttctagtat
tctacatcctacattgcaggaaggaagaacagcttgggaggtggcttctg
ggg
catgtgtcacttcttgctattgctcagctatttgattttgccaaagatct
acagaaggaaatttatgatgagtaagtaaagctatggtgaggccaacatg
tctgcttctggtctgtgattaagatctaaggctgggggaagaggaaaaga
atatacaccgggcagtggtggtgcgagcctttaatcccagcacttgggaa
gcaaatgcagatggatctctgagttccaagccagtctcgtctacagagtg
agctctgagacagctagacctccacagagaaaccctgtctcaaaaaacca
gaacaagggctggagagatggctcagcggttaagagttttggctgttctt
ccagaggctctgagttcaattcccagcatcacatggtggctcacaaccat
ctgtaatgggatctaatgccttcttttggcatgcaggtgtacatgcacat
agagcactcatataaataaataagtaaatcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79642788_79643892
seq2: B6Ng01-131K09.b_47_1149

seq1  GAATTCACTATCTAGCCCAAAAGTACAAATTGTACTAGGCAAAGTAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTAGCCCAAAAGTACAAATTGTACTAGGCAAAGTAAGGC  50

seq1  TCTAGCAACATAGAGTTCTGAGTCTAGGAGGTCCTGGGCCAGTCTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAACATAGAGTTCTGAGTCTAGGAGGTCCTGGGCCAGTCTGCCTC  100

seq1  TCTCCTAGAACCCAGCACCCCTCTTCCCATAACATAGGAGTCTGACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGAACCCAGCACCCCTCTTCCCATAACATAGGAGTCTGACTACT  150

seq1  TAACTACAAAAAGCAATCATGAACATGATCGAGGGTTTCAGTGCACGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAAAAAGCAATCATGAACATGATCGAGGGTTTCAGTGCACGCAT  200

seq1  GTAAGCTGCCCAATGATACACAGATGTGCTCAGCTGGTACCTACTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGCCCAATGATACACAGATGTGCTCAGCTGGTACCTACTCCTCC  250

seq1  AAGTTGGTACCAGGGATCCAGATGTGGTCAGTGTTTCTTAAGTAGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTACCAGGGATCCAGATGTGGTCAGTGTTTCTTAAGTAGCATCC  300

seq1  TTAGTAGGTCACATCTACCGCCAACGTCCCGAGACAACTACTGCATCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGTCACATCTACCGCCAACGTCCCGAGACAACTACTGCATCAGT  350

seq1  TCCTTTCCTTGCTGCTGAGGAGGAGTGCCTGGCAGAAGCAACTTAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTGCTGCTGAGGAGGAGTGCCTGGCAGAAGCAACTTAAGGGA  400

seq1  GAAGGGTTGACCTCAGCTCATGGGTGAGGAACGCCATCCACAGGCAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTGACCTCAGCTCATGGGTGAGGAACGCCATCCACAGGCAGGAA  450

seq1  GAGGCATTCAAGAGAGGCTGTCTGTGGCAGTGAGAGCCTGCAATTGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTCAAGAGAGGCTGTCTGTGGCAGTGAGAGCCTGCAATTGCCTC  500

seq1  CTCACGGCTATGAGGATCAAGAAGCAGGGAGGTTGAGGCCAGAATCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGCTATGAGGATCAAGAAGCAGGGAGGTTGAGGCCAGAATCAAGA  550

seq1  AAAAAAAAATGTCACCTTCAAGACCCACCCTGGCAACCTACTTTTGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGTCACCTTCAAGACCCACCCTGGCAACCTACTTTTGCCAC  600

seq1  AACTACATCACTAGCAAGAACAAAGTGTTCAAACTCATGGCCTGGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATCACTAGCAAGAACAAAGTGTTCAAACTCATGGCCTGGAGGCA  650

seq1  GGGGTGGGGGCGGGAGGTGTATTTCACATTTAAACTATAACCACCTCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGGCGGGAGGTGTATTTCACATTTAAACTATAACCACCTCGTG  700

seq1  CTGGCTGCATTGCAGAGGAGGGAGAAAGGCCATGCAAGCCACATCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCATTGCAGAGGAGGGAGAAAGGCCATGCAAGCCACATCCACCC  750

seq1  CTATTTACCTAGGGGTGCTGAGGATCAAACCGACTGCCTTGCCCACACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCTAGGGGTGCTGAGGATCAAACCGACTGCCTTGCCCACACTA  800

seq1  GGTGAGTGTTCTACCACTGAGTTACACCCCAAGCCTTACAGCCCCTCTTA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTG-TCTACCACTGAGTTACACCCCAAGCCTTACAGCCCCTCTTA  849

seq1  AAAGCCTCTGCCCATTCTAATGACTTCTGATGGCACTCTAACTTGCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCTGCCCATTCTAATGACTTCTGATGGCACTCTAACTTGCTAGA  899

seq1  ACCGTGCCCGCTGGTTCTGGTGGCTGCAGGGGGTTACCTGCCTACTTCTG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCGTGCCCGCTGGTTCTGGTGGCTGCAAGGGGTTACCTGCCTACTTCTG  949

seq1  CAGTAGAGCGGTACCT-CCTCACCATGAGAATAAGTTGGCTGAGAAATTA  999
      ||||||  || ||||| |||||||||||||||||||||||||||||  ||
seq2  CAGTAGGCCGTTACCTCCCTCACCATGAGAATAAGTTGGCTGAGAA--TA  997

seq1  CATTAAAGTATACTTGGAGCCCAGATTTGGAGTTTCCAG-CCAGC-TCTA  1047
      ||||||||||||||||||||||||| ||||||||||||| ||||| ||||
seq2  CATTAAAGTATACTTGGAGCCCAGA-TTGGAGTTTCCAGCCCAGCTTCTA  1046

seq1  GTATTCTTACCATCCTACATTGCAGG-AGGAAGAAACAGGCTGTGA-GTG  1095
      |||||||   |||||||||||||||| |||||| |||||  || || |||
seq2  GTATTCT--ACATCCTACATTGCAGGAAGGAAG-AACAGCTTGGGAGGTG  1093

seq1  GCTTCTGGGG  1105
      ||||||||||
seq2  GCTTCTGGGG  1103

seq1: chr1_172802246_172802566
seq2: B6Ng01-131K09.g_347_557 (reverse)

seq1  TTAAGGATTTA---GTTTATGTATATGAGTGCTCTATCTGCATGTACTCC  47
      |||| ||||||    ||||| |||||||||||||||| ||||||||| ||
seq2  TTAA-GATTTACTTATTTATTTATATGAGTGCTCTATGTGCATGTACACC  49

seq1  TGAATGCCAGAAGAGGGCATCAAA-----------------------CAC  74
      || |||||| |||| ||||| | |                       |||
seq2  TGCATGCCAAAAGAAGGCATTAGATCCCATTACAGATGGTTGTGAGCCAC  99

seq1  CATGTGATTGCTAGGAATTGAACTCAGGACCTCTGGGAGAACAGCCAGTG  124
      ||||||| |||| ||||||||||||||  ||||||| ||||||||||   
seq2  CATGTGA-TGCTGGGAATTGAACTCAGAGCCTCTGGAAGAACAGCCAAAA  148

seq1  CTCTTAACCGCTGAGCCATCTCTCCAGCCCAAGGTCTTAAGAATCATCAC  174
      ||||||||||||||||||||||||||||||                    
seq2  CTCTTAACCGCTGAGCCATCTCTCCAGCCC--------------------  178

seq1  TAGTAACACCCTTCCCAAACTAACTAGGCATGTTTAAAGACAATTATTGT  224
                                                    ||||
seq2  ----------------------------------------------TTGT  182

seq1  TCACATTATTTAAAAATTATTTCCATGTCAATGCCGTGTTTGTTTGTTTT  274
      ||                                                
seq2  TC------------------------------------------------  184

seq1  TGAGACAGGGTTTGTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGT  321
                          |||||||| ||||||||||||||||||
seq2  --------------------TGGTTTTTTGAGACAGGGTTTCTCTGT  211