BAC Information

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BAC

Clone NameB6Ng01-131N02
Chromosome1 (Build37)10 (Build37)
Map Location 126,907,526 - 126,908,72296,959,020 - 96,959,447
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDpp10, LOC666998
Downstream geneActr3, Slc35f5, Lypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N02.bB6Ng01-131N02.g
ACCDH932780DH932781
length1,186956
definitionDH932780|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N02, 5' end.DH932781|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,907,526 - 126,908,722)(96,959,020 - 96,959,447)
sequence
gaattccttcaccgtttctgttccaagttcctgcttgagcccctgccttg
acttccatcagtgatggatggactgctaacctagcagtataagccaaata
agtactcttttcccccaagccaagtttcttttggtgagaatgtctttatc
acagcaacagaaaagatactacaacagtgattgaggtagacatctagggt
tttgtcactagatttcacatgaatacacaaacacacagataccacaccta
cacatacacactcaaatcacacacagatacacacaaacatatatgacaac
acatgtttatatatatatacaccaaacatacacacatacacatcccatat
acatatacacacaaatgtttcatacatatcacaatacacatttatataca
cacagacacccatactcctccaagcacatacagtttctacacacatacca
catttcatagtttgatctgtgttatctccaaaagctatgcataagcatct
gtgtagcttcctaagaaagaacacttatccctggctattttgccctgctg
tgtgagtctctcatggtcagtggaagtcatgaatggaagagcacctatca
gacaaggttcataggcagcagtgcataactatctgtctctactaccatgg
ctgctacatagagtcatggggaaaggagctccttggatctgcatgcaagc
ccatcctttgtcagcctgttgtgctctttagctagcagggctacaaaatg
ccacctgatttgctttgctattgttaatctagacagcatttcaattgtct
ccacacatgttttcattgtatttcctttcctttctgatagctgtgggggt
ctgacctaggtcttactaccaccagtgacctttaggttgccagaatttct
tgcttcagcctgcagctttctccctcagaggtttcctttccttattttgt
actcctcatcatcccattttgggaacattttaattctggaccatagtcat
agcctcaggcacaaatgccagtgcatggctagggagacagtaggcagccc
ctcgaggcagctgtctctgctttctcttttgtcttggtgctcgaatgctc
agttcccaggctggatcctccatgctgctcttgggtggtagaaatgggag
gaatggcatggctaagaattcctggccaagggctgt
gaattctttgtttagctctgaaccccattttttaaatagagttatttgaa
cttctggattccagcttcttgaggtttttgtatatattggatactagtcc
cctatcacatttaggattagtaaaaatcctttctcaatctgttagtgtcc
tttttgtcttattgacagtatcttttgccttatagaagctttgcaatttt
atgaggtcccatttgttgattattgatcttacagcacaagccattgctgt
tctgttcaggaaattttcccttgtgcccatatcttcaaggctttagaata
cccaagatacaattttcaaaacacaagaaaatcaagaagaaggaagacca
acgtgtggatacttcattcctccttagaatagggaacaaaatacaaatgg
aaggagttacagagacaaagtttggagctaagatgaaaggatggaccatc
cagagactaccccaccaggggatccaacccccaatcagccaacaaacgca
aacactattgcacatgccagcaagattttgctaaaaggaccctgatatag
ctgtctcatgtgaggctatgccagtgcctggcaaatacagaagtggatgc
tcacagtcatctattggatggaatagagggcccacaatggaggagctaga
gaaagtacccaagagctgaaggggtctgcaaccctataggtggaacaaca
atatgaactaaccagtacccccagagctcgtgtctctagctgcatatgta
gcagaagatggcctagttggccatcattgggaagagaggccccttggtct
tgtagactttatatgccccagtacaggggaatgccagggctaagaagtgg
gagtgggtagacaggggagcagggcaggggaaggtatagggggactttcg
ggatagcatttgaaatataaatgaagaaatatctaataaaaaactgaaaa
aaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126907526_126908722
seq2: B6Ng01-131N02.b_45_1230 (reverse)

seq1  ACAG-CCTTCGCCAGGAATCTCTAAGCAATG-CAATCCT-CCATTTCTAC  47
      |||| |||| ||||||||| ||| ||| ||| || |||| ||||||||||
seq2  ACAGCCCTTGGCCAGGAAT-TCTTAGCCATGCCATTCCTCCCATTTCTAC  49

seq1  --ACCAAGAGCAGCATGGAGAATCGCAGCCCTGGGGACTGGAAGCATCCG  95
         ||||||||||||||||| ||| ||| |||||| ||||  ||||| ||
seq2  CACCCAAGAGCAGCATGGAGGATC-CAG-CCTGGGAACTG--AGCATTCG  95

seq1  AGCCACAAGAC-AAAGAGAAAGCAAGGAAGACAGCTTGCCTCGAGGGGCT  144
      |||  |||||| ||||||||||||    ||||||| ||||||||||||||
seq2  AGCACCAAGACAAAAGAGAAAGCA---GAGACAGC-TGCCTCGAGGGGCT  141

seq1  GCCTACTGTCTCCCTAGCCATGGCACTGGGCATTTGTGCCCTGAGGGCTA  194
      ||||||||||||||||||||| ||||| |||||||||| ||||| |||||
seq2  GCCTACTGTCTCCCTAGCCAT-GCACT-GGCATTTGTG-CCTGA-GGCTA  187

seq1  TGAACTATGGTCCAGAATTAAAATTGTTCCCAAAATGGGATGATGAGGGA  244
      || |||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TG-ACTATGGTCCAGAATTAAAA-TGTTCCCAAAATGGGATGATGA-GGA  234

seq1  GTACAAAATAAGGAAAGGAAACCTCTTGAGGGAGAAAGCTGCAGGCTGAA  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTACAAAATAAGGAAAGGAAACCTC-TGAGGGAGAAAGCTGCAGGCTGAA  283

seq1  GCAAG-AATTCTGGCAACCTAAAGGTCACTGGTGGTAGTAAGACCTTAGG  343
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAAGAAATTCTGGCAACCTAAAGGTCACTGGTGGTAGTAAGACC-TAGG  332

seq1  TCAGACCCCCACAGCTATCAGAAAGGAAAGGAAATACAATGAAAACATGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCCCACAGCTATCAGAAAGGAAAGGAAATACAATGAAAACATGT  382

seq1  GTGGAGACAATTGAAATGCTGTCTAGATTAACAATAGCAAAGCAAATCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACAATTGAAATGCTGTCTAGATTAACAATAGCAAAGCAAATCAG  432

seq1  GTGGCATTTTGTAGCCCTGCTAGCTAAAGAGCACAACAGGCTGACAAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTTTGTAGCCCTGCTAGCTAAAGAGCACAACAGGCTGACAAAGG  482

seq1  ATGGGCTTGCATGCAGATCCAAGGAGCTCCTTTCCCCATGACTCTATGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTGCATGCAGATCCAAGGAGCTCCTTTCCCCATGACTCTATGTA  532

seq1  GCAGCCATGGTAGTAGAGACAGATAGTTATGCACTGCTGCCTATGAACCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATGGTAGTAGAGACAGATAGTTATGCACTGCTGCCTATGAACCT  582

seq1  TGTCTGATAGGTGCTCTTCCATTCATGACTTCCACTGACCATGAGAGACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATAGGTGCTCTTCCATTCATGACTTCCACTGACCATGAGAGACT  632

seq1  CACACAGCAGGGCAAAATAGCCAGGGATAAGTGTTCTTTCTTAGGAAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAGGGCAAAATAGCCAGGGATAAGTGTTCTTTCTTAGGAAGCT  682

seq1  ACACAGATGCTTATGCATAGCTTTTGGAGATAACACAGATCAAACTATGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGCTTATGCATAGCTTTTGGAGATAACACAGATCAAACTATGA  732

seq1  AATGTGGTATGTGTGTAGAAACTGTATGTGCTTGGAGGAGTATGGGTGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTATGTGTGTAGAAACTGTATGTGCTTGGAGGAGTATGGGTGTC  782

seq1  TGTGTGTATATAAATGTGTATTGTGATATGTATGAAACATTTGTGTGTAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATAAATGTGTATTGTGATATGTATGAAACATTTGTGTGTAT  832

seq1  ATGTATATGGGATGTGTATGTGTGTATGTTTGGTGTATATATATATAAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGGGATGTGTATGTGTGTATGTTTGGTGTATATATATATAAAC  882

seq1  ATGTGTTGTCATATATGTTTGTGTGTATCTGTGTGTGATTTGAGTGTGTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGTCATATATGTTTGTGTGTATCTGTGTGTGATTTGAGTGTGTA  932

seq1  TGTGTAGGTGTGGTATCTGTGTGTTTGTGTATTCATGTGAAATCTAGTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGTGTGGTATCTGTGTGTTTGTGTATTCATGTGAAATCTAGTGA  982

seq1  CAAAACCCTAGATGTCTACCTCAATCACTGTTGTAGTATCTTTTCTGTTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCTAGATGTCTACCTCAATCACTGTTGTAGTATCTTTTCTGTTG  1032

seq1  CTGTGATAAAGACATTCTCACCAAAAGAAACTTGGCTTGGGGGAAAAGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAAAGACATTCTCACCAAAAGAAACTTGGCTTGGGGGAAAAGAG  1082

seq1  TACTTATTTGGCTTATACTGCTAGGTTAGCAGTCCATCCATCACTGATGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTGGCTTATACTGCTAGGTTAGCAGTCCATCCATCACTGATGG  1132

seq1  AAGTCAAGGCAGGGGCTCAAGCAGGAACTTGGAACAGAAACGGTGAAGGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGGCAGGGGCTCAAGCAGGAACTTGGAACAGAAACGGTGAAGGA  1182

seq1  ATTC  1197
      ||||
seq2  ATTC  1186

seq1: chr10_96959020_96959447
seq2: B6Ng01-131N02.g_582_1024 (reverse)

seq1  TTTTTTTTTTCA-TTTTTTATTAGATATTTTCTTCATTTACATTTCAAAT  49
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  TTTTTTTTTTCAGTTTTTTATTAGATA-TTTCTTCATTTATATTTCAAAT  49

seq1  ACTATCCCGGAAGT-CCCCTATACCCTCTCCCTGCCCTG-----------  87
       |||||||| |||| |||||||||| || ||||||||||           
seq2  GCTATCCCGAAAGTCCCCCTATACCTTC-CCCTGCCCTGCTCCCCTGTCT  98

seq1  -----CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAA  132
           |||||||||||| |||||||  |||||||||||||||||||||||
seq2  ACCCACTCCCACTTCTTAGCCCTGGCATTCCCCTGTACTGGGGCATATAA  148

seq1  AATTTGCAAGACCAAGGGGCCTCTCCTGCCATTGATGGCCGACTAGACCA  182
      | | | ||||||||||||||||||| | ||| |||||||| ||||| |||
seq2  AGTCTACAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCA  198

seq1  TCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTAGGTGTACTGATTA  232
      |||||||||||||||||||||||||||||||||||| || |||||| |||
seq2  TCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTA  248

seq1  GTTCATATTGTTGTTCCACCTGTAGGGTTGCAGACCCCTTCAGCTCCTTG  282
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCT-CTTG  297

seq1  GATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGA  332
      | ||||||||||||||||||||||| ||||||| | ||||||||||||||
seq2  GGTACTTTCTCTAGCTCCTCCATTGTGGGCCCTCTATTCCATCCAATAGA  347

seq1  TGATTTTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCCTAGCCTCAC  382
      ||| | |||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCAC  397

seq1  ATGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCAT  428
      |||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGAGACAGCTATATCAGGGTCCTTTTAGCAAAATCTTGCTGGCAT  443