BAC Information

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BAC

Clone NameB6Ng01-131P17
Chromosome1 (Build37)17 (Build37)
Map Location 174,664,946 - 174,665,46522,862,725 - 22,863,241
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131P17.bB6Ng01-131P17.g
ACCDH932904DH932905
length1,0381,109
definitionDH932904|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P17, 5' end.DH932905|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,664,946 - 174,665,465)(22,862,725 - 22,863,241)
sequence
gaattctctggtggaatttttggggtcacttacatatactaccatatcat
ctgcaaaaagtgatatttcaacttcttcctttccaatttgtatccccttg
atctccctttgttatcgaattgctttggctaggacttccagtacaatgtt
gaataggtagggagaaagtgggcagccttgtctagtccctgattttagtg
ggattgcttccagcttctcaccatttactttgatgttggctactggcttt
ctgtagattgcttttatcatgtttaggtatggtacttgaattcctgatct
ttctaaggcttttatcatgaatgggtgttggattttatcaaatgctttct
cagcatctaacgagatgatcatgtggtttttgtctttgaggttgtttata
taatggattacattgatggatttctgtatttaaaaccaccccaacatccc
tggaatgaaacctgcttggtcaggatggatgattgttttgatgtgttctt
ggattcagttactgagaaatttattgaggatttttgcatcgatattcata
agggaaattggtctgaagttctctatctttgttgggtctttctgtggttt
aggtatcagagtaatagtggcttcataaaatgagttgggtagagtacctt
ctacttctattgtgtggaatagtttgtgaggaactggaattagatcttct
ttgaaggtctgatagaactctgtactaaacccatctggtccggggctttt
ttttttgggttgggagactattaaatgagtgcttctatttctttagggga
tataggactgtttagatcattaacctgatcctgatataacttttggcacc
tgttatctgtctagaaattttccatttcatccaggttctccagttttgtt
gagtatagccttttgtagaaggatctgatgatggtttggattcttcagga
tctgttgttatgtcctcccttttcttttctgaatttgtaaaaaggaagct
gtccctgtgcccttaagggagtctgggctaagggttta
gaattctgggcaactccttattggttctatcactggaaaaatgttacctt
ccacattttgctctgaactgtcagtagacatttagggaaggtccaaaact
cagaggccccttttctcactcagacttgataaactgttgttcttcccatg
tggggcattgggctatacacggacagtctggtgtccagttgagctgaggt
ctgaaccccagagtggtgataattcacctacatggcactgtaggcattcc
cttgtgtctcctggaactctggctccagttgaaattagtgcccctacagc
ccccacaggagaagtatggcttttagtcacgtaggcaatgtcccaagctt
ctgaccttcaggctaaactcatcctagttacctagcaacagtaaagataa
cagcccaccataagaggggctccttggccccacctagctctcttactccc
cttactcttcttactctcctcactccacttctctcctctcactctcttac
tctctctccctcttgctctctctcttttactccagcctttcttctctctc
tccttttctgacttctctcctcttggccatggccggcctatctctctctc
tctttctctaccttctctccttcctccctgcctttctacaataaagctct
aaaaccatagactgtctctgtttatcaaggcccgctgcgcttggatgatg
ggataggctttctcctaatgagccatatctaatctcccgatagaaggctt
tcctgtgatccagtcaaggcctggactaaggactcttgcatgcatgagaa
cctctctccctctaccctctctcctataaccctggggcccgagggtgttg
ccccagggcccctggtttgaggggctgccccttgttcatcccccgtcgag
tggggtcagtggcttagattgtccaccttgtttcagtcgaggctagatct
tgaccccgggagaccttgactggtggtaattctcacctacatgggacgca
ggctttcgatcatgttttcttgacatcagctctgtgcataagcctgttgc
ccacagtccatctcatcagaatagttgtgctgaagaaccaaaatgcatat
tcagcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174664946_174665465
seq2: B6Ng01-131P17.b_560_1084 (reverse)

seq1  TAAACCCTTAG-CTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATT  49
      ||||||||||| | |||||| || |||||||||||||||   ||||  ||
seq2  TAAACCCTTAGCCCAGACTCCCTTAAGGGCACAGGGACAGCTTCCT-TTT  49

seq1  AACAAAATCAGAAATGAAAAGGGA-GACATAACAACAGATCCTGAAGAAA  98
       ||||| ||||||| ||||||||| |||||||||||||||||||||| ||
seq2  TACAAATTCAGAAAAGAAAAGGGAGGACATAACAACAGATCCTGAAG-AA  98

seq1  TCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  148
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCATCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTG  148

seq1  GAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC-AA  197
      || |||||||| |||||||| |||||||| |||||||| ||||| || ||
seq2  GAGAACCTGGATGAAATGGA-AAATTTCTAGACAGATAACAGGTGCCAAA  197

seq1  AGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAA  247
      ||||  |||||||||| ||| |  ||||||||||||| ||||| ||||||
seq2  AGTTATATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAA  247

seq1  GAAATAGAAGCAGTTA-TTAATAGTCTCCCAACC----AAAAAAAGCCCA  292
      |||||||||||| | | |||||||||||||||||    ||||||||||| 
seq2  GAAATAGAAGCACTCATTTAATAGTCTCCCAACCCAAAAAAAAAAGCCCC  297

seq1  GGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCT  342
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GGACCAGATGGGTTTAGTACAGAGTTCTATCAGACCTTCAAAGAAGATCT  347

seq1  AATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTC  392
      ||||||| |||  ||||||||||| |||| ||||||||||||||||||||
seq2  AATTCCAGTTCCTCACAAACTATTCCACACAATAGAAGTAGAAGGTACTC  397

seq1  TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG  447

seq1  AAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATAT  492
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATAT  497

seq1  CGATGCAAAAATCCTCAATAAAATTCTC  520
      |||||||||||||||||||||| |||||
seq2  CGATGCAAAAATCCTCAATAAATTTCTC  525

seq1: chr17_22862725_22863241
seq2: B6Ng01-131P17.g_667_1175 (reverse)

seq1  TGGGCTGAATATGCATTTGTGTTCATCTGCACAACTAATTCCTGATGAGA  50
      ||||||||||||||||||  |||| || |||||||||  | |||||||||
seq2  TGGGCTGAATATGCATTTTGGTTCTTCAGCACAACTA--TTCTGATGAGA  48

seq1  TTGGGACTGTGGGGCAACAGGC-TATGCACAGGAGCCTGATGTCCAGGAG  99
      |  ||||||| ||||||||||| |||||||| ||| |||||||| || | 
seq2  T--GGACTGT-GGGCAACAGGCTTATGCACA-GAG-CTGATGTCAAGAAA  93

seq1  ACATGATCGAAAGCCTGCCGTCCCATGTAGGTGAGAATTACCACCAGTCA  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATGATCGAAAGCCTG-CGTCCCATGTAGGTGAGAATTACCACCAGTCA  142

seq1  GGTTCTCCCGGGGTTCAAGATCTAGCCTCGACTGGAAACCAGGTGGAC-A  198
       | |||||||||| ||||||||||||||||||| ||||| |||||||| |
seq2  AGGTCTCCCGGGG-TCAAGATCTAGCCTCGACT-GAAACAAGGTGGACAA  190

seq1  TCTAAGCCACTGACCCCACTCGACGGGGGATGAACAAGGGGCAGCCCCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCACTGACCCCACTCGACGGGGGATGAACAAGGGGCAGCCCCTC  240

seq1  AAACCAGGGGCCCTGGGGCAACACCCTCGGGCCCCAGGGTTATAGGAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGGGCCCTGGGGCAACACCCTCGGGCCCCAGGGTTATAGGAGAG  290

seq1  AGGGCAGAGGGAGAGAGGTTCTCATGCATGCAAGAGTCCTTAGTCCAGGC  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGGGAGAGAGGTTCTCATGCATGCAAGAGTCCTTAGTCCAGGC  340

seq1  CTTGACTGGATCACAGGAAAGCCTTCTATCGGGAGATTAGATATGGCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGGATCACAGGAAAGCCTTCTATCGGGAGATTAGATATGGCTCA  390

seq1  TTAGGAGAAAGCCTATCCCATCATCCAAGCGCAGCGGGCCTTGATAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAAAGCCTATCCCATCATCCAAGCGCAGCGGGCCTTGATAAACA  440

seq1  GAGACAGTCTATGGTTTTAGAGCTTTATTGTAGAAAGGCAGGGAGGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTCTATGGTTTTAGAGCTTTATTGTAGAAAGGCAGGGAGGAAGG  490

seq1  AGAGAAGGTAGAGAAAGAG  517
      |||||||||||||||||||
seq2  AGAGAAGGTAGAGAAAGAG  509