BAC Information

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BAC

Clone NameB6Ng01-132A13
Chromosome1 (Build37)2 (Build37)
Map Location 123,321,091 - 123,321,38029,334,810 - 29,335,997
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMarco, En1, AI848258, Insig2
Downstream geneCcdc93, LOC100041926, Htr5b, LOC666656, Ddx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132A13.bB6Ng01-132A13.g
ACCDH932944DH932945
length2181,161
definitionDH932944|Mus musculus domesticus DNA, BAC clone: B6Ng01-132A13, 5' end.DH932945|Mus musculus domesticus DNA, BAC clone: B6Ng01-132A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,321,091 - 123,321,380)(29,334,810 - 29,335,997)
sequence
ttggatcttctactggtaggcagccattgttggactagctagaccacaaa
ctgtaagccattctaataaattcccatacacacacatatatatgtatgta
tgcaggcatgcatgtatgtttgtatgtatgtatatatatatatgtatgta
tgtgtgtgtatgtatgtatgtatgtatatgtgtgtgtgtgtgtgtgagtg
tgtgtgtatgttaaatgt
gaattctagtcttttgctctgtgggatctgggatctgttttcttaaaggc
cgggggaggtttatctcatcagattttagtatgaaaacgtcaaacatcaa
aaaagttgaaaaagttgcagcgtagacacccctgtacccatgctccaggc
gcacaccggtaggctttctctcacccacccactcatttgcccaggacctg
ctgttccaacttgtgcctttaatgcagctggaaacagcatatgccaatac
acactctccctagacccttgagcagcacagttaaatagaactcaatggtc
attaaaaaacatttgggtaaaacctgtccatgactgaaatgtgcacagtt
ctgtaaaactggacaagtgcagaattcagacttttcttcattgtgaagtg
tgtcatccttccccgccaatgccccgccccttccctccaaccagtcaaat
gctctaggactttctctaggtatagtacaatatgctccagtgggggacag
ttttcactctgtagaggtgacagcaacagcacaagcagctctctgcaatc
gtgtgcttcttcttactaaaaaaagcactgtgtgcgggctttcagctgta
gttacggtatggttttgtggcttcacgtgttcgtgggttctataccgtgc
atatgaagaaacttgggcgtgcatagtcacctgtactatttcggataaga
cagcataagaataaaggaacagagtgtttaaaagcaaaatgagtgatttt
gcttcccctactctatctccccatctctccttcccttatggtggccggtg
aggcacgttgaagcaaacctcatacatcgtgacatctctgatgtacatat
ttcagcatccacttctaaaaactatagcagagatgaggctctgaccatgc
ctagcaaagcactaacatctgacagaagtctgtgtgtatctagagaggac
tcagcaagtttgccctcccttgcccagtgcagttcagtccctgggcacct
tctctgctcatcccctgctgcagaattaactgctgaagaacacatactct
ttcttgatgggagtccaaatctttttgttttatttgcatcagagttttag
tagctgataagtttctatcatggagtgccataaccagattaagtgttgga
gattgatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123321091_123321380
seq2: B6Ng01-132A13.b_205_272 (reverse)

seq1  ACATATAACATACACACACACACTCAAAGTATTTTATATATATATATATA  50
      |||| |||||||||||||||| | || |       | | ||||| ||| |
seq2  ACATTTAACATACACACACACTCACACACACACACACACATATACATACA  50

seq1  TATATATATATATATATATGTAGTTATATATAGTTATATGTATATAGTTA  100
      || ||| ||| | | | |                                
seq2  TACATACATACACACACA--------------------------------  68

seq1  TATGTATATATAGTTATATATACATGTATACATATAACTGCATATACATT  150
                                                        
seq2  --------------------------------------------------  68

seq1  AAACATGTGTATAATATACATCTATATATCTATATGTTATATGTATACAT  200
                                                        
seq2  --------------------------------------------------  68

seq1  ATATAAAATTGCAAGATATATATATATATATATATATATATATATATATA  250
                                                        
seq2  --------------------------------------------------  68

seq1  TATATATATAATCACACACACACACACACACACACACACA  290
                                              
seq2  ----------------------------------------  68

seq1: chr2_29334810_29335997
seq2: B6Ng01-132A13.g_68_1228 (reverse)

seq1  TCAGATCAATCTCAAAAACAAAACTCTAAAATACTTGTTTTAATGGCACT  50
      |||||||||||||     ||| ||| |||    || |||   ||||||||
seq2  TCAGATCAATCTC-----CAACACT-TAA---TCTGGTT---ATGGCACT  38

seq1  -CATGATTAGAAATTTATCCAGCTACTAAAAACTCTTGATGCAAAATAAA  99
       ||||| |||||| |||| |||||||| ||||||| |||||| |||||||
seq2  CCATGA-TAGAAACTTAT-CAGCTACT-AAAACTC-TGATGC-AAATAAA  83

seq1  AACACAAGAATTTGGGACTTCCCATCA--GAAGAGTATGTGTTTCTTCAG  147
      |  | ||||  || |||| ||||||||   ||||||||||| ||||||||
seq2  ACAAAAAGA--TTTGGAC-TCCCATCAAGAAAGAGTATGTG-TTCTTCAG  129

seq1  CCAGTTAATTCTGCAGCCAGGGGATGAGCAGAGAAAGGGTGCCCAGGGGA  197
       ||||||||||||||| ||||||||||||||||||  |||||||| ||||
seq2  -CAGTTAATTCTGCAG-CAGGGGATGAGCAGAGAA--GGTGCCCA-GGGA  174

seq1  CTGAACTGCACTGGGCAAGGGGAGGGCAAACCTTGCCTGAGTCCTCTCTT  247
      |||||||||||||||||| ||||||||||| |||| |||||||||||| |
seq2  CTGAACTGCACTGGGCAA-GGGAGGGCAAA-CTTG-CTGAGTCCTCTC-T  220

seq1  AGATACACACAGACTTCTGTCAGATGTTAGTGCTTTGCTAGGCATGGTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACAGACTTCTGTCAGATGTTAGTGCTTTGCTAGGCATGGTCA  270

seq1  GAGCCTCATCTCTGCTATAGTTTTTAGAAGTGGATGCTGAAATATGTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATCTCTGCTATAGTTTTTAGAAGTGGATGCTGAAATATGTACA  320

seq1  TCAGAGATGTCACGATGTATGAGGTTTGCTTCAACGTGCCTCACCGGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGTCACGATGTATGAGGTTTGCTTCAACGTGCCTCACCGGCCA  370

seq1  CCATAAGGGAAGGAGAGATGGGGAGATAGAGTAGGGGAAGCAAAATCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGGAAGGAGAGATGGGGAGATAGAGTAGGGGAAGCAAAATCACT  420

seq1  CATTTTGCTTTTAAACACTCTGTTCCTTTATTCTTATGCTGTCTTATCCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTTTTAAACACTCTGTTCCTTTATTCTTATGCTGTCTTATCCG  470

seq1  AAATAGTACAGGTGACTATGCACGCCCAAGTTTCTTCATATGCACGGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTACAGGTGACTATGCACGCCCAAGTTTCTTCATATGCACGGTAT  520

seq1  AGAACCCACGAACACGTGAAGCCACAAAACCATACCGTAACTACAGCTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACGAACACGTGAAGCCACAAAACCATACCGTAACTACAGCTGA  570

seq1  AAGCCCGCACACAGTGCTTTTTTTAGTAAGAAGAAGCACACGATTGCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGCACACAGTGCTTTTTTTAGTAAGAAGAAGCACACGATTGCAGA  620

seq1  GAGCTGCTTGTGCTGTTGCTGTCACCTCTACAGAGTGAAAACTGTCCCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTGTGCTGTTGCTGTCACCTCTACAGAGTGAAAACTGTCCCCC  670

seq1  ACTGGAGCATATTGTACTATACCTAGAGAAAGTCCTAGAGCATTTGACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCATATTGTACTATACCTAGAGAAAGTCCTAGAGCATTTGACTG  720

seq1  GTTGGAGGGAAGGGGCGGGGCATTGGCGGGGAAGGATGACACACTTCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGGAAGGGGCGGGGCATTGGCGGGGAAGGATGACACACTTCACA  770

seq1  ATGAAGAAAAGTCTGAATTCTGCACTTGTCCAGTTTTACAGAACTGTGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAGTCTGAATTCTGCACTTGTCCAGTTTTACAGAACTGTGCA  820

seq1  CATTTCAGTCATGGACAGGTTTTACCCAAATGTTTTTTAATGACCATTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGTCATGGACAGGTTTTACCCAAATGTTTTTTAATGACCATTGA  870

seq1  GTTCTATTTAACTGTGCTGCTCAAGGGTCTAGGGAGAGTGTGTATTGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTAACTGTGCTGCTCAAGGGTCTAGGGAGAGTGTGTATTGGCA  920

seq1  TATGCTGTTTCCAGCTGCATTAAAGGCACAAGTTGGAACAGCAGGTCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTTTCCAGCTGCATTAAAGGCACAAGTTGGAACAGCAGGTCCTG  970

seq1  GGCAAATGAGTGGGTGGGTGAGAGAAAGCCTACCGGTGTGCGCCTGGAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGAGTGGGTGGGTGAGAGAAAGCCTACCGGTGTGCGCCTGGAGC  1020

seq1  ATGGGTACAGGGGTGTCTACGCTGCAACTTTTTCAACTTTTTTGATGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTACAGGGGTGTCTACGCTGCAACTTTTTCAACTTTTTTGATGTTT  1070

seq1  GACGTTTTCATACTAAAATCTGATGAGATAAACCTCCCCCGGCCTTTAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTTCATACTAAAATCTGATGAGATAAACCTCCCCCGGCCTTTAAG  1120

seq1  AAAACAGATCCCAGATCCCACAGAGCAAAAGACTAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATCCCAGATCCCACAGAGCAAAAGACTAGAATTC  1161