BAC Information

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BAC

Clone NameB6Ng01-132C08
Chromosome1 (Build37)
Map Location 42,232,773 - 42,346,937
singlet/doubletdoublet
Overlap geneLOC666582
Upstream geneLOC100041441, LOC383634
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132C08.bB6Ng01-132C08.g
ACCDH933024DH933025
length9491,102
definitionDH933024|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C08, 5' end.DH933025|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,346,261 - 42,346,937)(42,232,773 - 42,233,883)
sequence
gaattccaagtgctgccagacatgaccttctgaggagagaggaagtttaa
cctgcctgtagggctacttgacttcctccagtgagtaaagatggggtgaa
ggcttacatgaacctggacatgcagtcctgggtcaggaagggatctatcc
tgctcctactgatcacaggacaagatttcaggggtttggacacaattcaa
ccccactcttgttccacacttgctctcccctgctaccatcactctttggt
cccacacctagtgaccaggcatggtggcacatgcctttgatcccagcact
tgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctac
agagtgagttccaggatagtcagggctacacagagaaaccctgtctcgaa
aagccaaaaaaaaaaaaaaaaaaaaataaataaataataaaaaaataaag
aaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagg
aaggaaggaaggaaggaaggaagaaaggaagaaagaaagaaagaaaggaa
gaaagaaaggaaagcaaatgtcaatattcttcccacagaaagatttcaca
gttcccttacaatgggacaccaacacaagcacaacgaataacaccttcca
cttagaatctgtcctgcctgcaaaatgagctgcacagaacttgtggatgt
ggctaaccaatgactgatctaacttgaggccctaggaaacaaccaaacat
gagtggcaaaaatagccaatgaaacgattcctagtgatattctgttatac
tcatagatcagtgccagcccaatcttcaaaatagagacttcatctggcaa
ctaatgggagaagatgcagagacccacatccaaacattagtgggagcttg
gggagccaaaaggctatggagaaagactatagaagctagaggggtcaga
gaattcatctcattactattggaaatgtcactgttggtattttaacaaga
aaatgaaggaccacagttttcactcagctcttatatttaagatgcagaaa
tatagaacccctgctccaagaaatgaggtgctctgttgaattacaggcat
agaaatttggcaaaacagatgtggacatttagggaaataatagttgtaaa
gaacattaaactacagtaaaccttacatatgatgtctgagaatactagac
catcatactaaagctctctttcaccaataaccacgggagataatatagag
tcccataaaatgacaataacaactaacctattacaggagaaagaaagcat
gcaaatgcacgagaaacattactaacaacctaacccaagtttgctctata
tgcactcccattttatagacttgggtttttaacaaaggaaggctgggaga
ctttcattatacaaacatcttgctaagttattggcaacagtagtttgagt
gtttggggctaaacactaaaaatactattcctgccattaagtgtgaaaga
ggaacaggtagcctctaaggtcctttagtgtgaacaacttcagtaggatg
atatggatattcagcttagaaacagactccataggaccagttgaggctgg
acagggactgtgatagactggtatccagtctacataaaggacccaaataa
cctagtatcaaactcaacagatagtttccaaaagaaggcatactaatggc
cacagatatatacaaacattctcaatatcattaataatcagaaaatttta
aattagagcaaaagtagatgtttccttgaaggataatttcaaaaacacaa
aaagtgtcagtataagtattagtaggaatttaagttagttcagccactat
aacaaacagcatgtagattcctcaaaaggtaaacaaacaaaacaaacaga
caaacaaactcagatccagcaattctacttgtaggtacatcaagaatata
tatattttttttaccaaagtgagatcagaattttctattagtatcacatt
ggtcacaatgacaaagaagcttggacaattcattgaaaaggtgtgtgtgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42346261_42346937
seq2: B6Ng01-132C08.b_44_720 (reverse)

seq1  CATTTTGCAGGCAGGACAGATTCTAAGTGGAAGGTGTTATTCGTTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCAGGCAGGACAGATTCTAAGTGGAAGGTGTTATTCGTTGTGCT  50

seq1  TGTGTTGGTGTCCCATTGTAAGGGAACTGTGAAATCTTTCTGTGGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGTGTCCCATTGTAAGGGAACTGTGAAATCTTTCTGTGGGAAGA  100

seq1  ATATTGACATTTGCTTTCCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACATTTGCTTTCCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTTC  150

seq1  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  200

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTATTTTTTTATTATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTATTTTTTTATTATTTATTT  250

seq1  ATTTATTTTTTTTTTTTTTTTTGGCTTTTCGAGACAGGGTTTCTCTGTGT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTTTTTTTTTTTGGCTTTTCGAGACAGGGTTTCTCTGTGT  300

seq1  AGCCCTGACTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  350

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGTG  400

seq1  CCACCATGCCTGGTCACTAGGTGTGGGACCAAAGAGTGATGGTAGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGCCTGGTCACTAGGTGTGGGACCAAAGAGTGATGGTAGCAGGG  450

seq1  GAGAGCAAGTGTGGAACAAGAGTGGGGTTGAATTGTGTCCAAACCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGTGTGGAACAAGAGTGGGGTTGAATTGTGTCCAAACCCCTGA  500

seq1  AATCTTGTCCTGTGATCAGTAGGAGCAGGATAGATCCCTTCCTGACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTCCTGTGATCAGTAGGAGCAGGATAGATCCCTTCCTGACCCAG  550

seq1  GACTGCATGTCCAGGTTCATGTAAGCCTTCACCCCATCTTTACTCACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATGTCCAGGTTCATGTAAGCCTTCACCCCATCTTTACTCACTGG  600

seq1  AGGAAGTCAAGTAGCCCTACAGGCAGGTTAAACTTCCTCTCTCCTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCAAGTAGCCCTACAGGCAGGTTAAACTTCCTCTCTCCTCAGAA  650

seq1  GGTCATGTCTGGCAGCACTTGGAATTC  677
      |||||||||||||||||||||||||||
seq2  GGTCATGTCTGGCAGCACTTGGAATTC  677

seq1: chr1_42232773_42233883
seq2: B6Ng01-132C08.g_69_1170

seq1  GAATTCATCTCATTACTATTGGAAATGTCACTGTTGGTATTTTAACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCATTACTATTGGAAATGTCACTGTTGGTATTTTAACAAGA  50

seq1  AAATGAAGGACCACAGTTTTCACTCAGCTCTTATATTTAAGATGCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGACCACAGTTTTCACTCAGCTCTTATATTTAAGATGCAGAAA  100

seq1  TATAGAACCCCTGCTCCAAGAAATGAGGTGCTCTGTTGAATTACAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACCCCTGCTCCAAGAAATGAGGTGCTCTGTTGAATTACAGGCAT  150

seq1  AGAAATTTGGCAAAACAGATGTGGACATTTAGGGAAATAATAGTTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGGCAAAACAGATGTGGACATTTAGGGAAATAATAGTTGTAAA  200

seq1  GAACATTAAACTACAGTAAACCTTACATATGATGTCTGAGAATACTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTAAACTACAGTAAACCTTACATATGATGTCTGAGAATACTAGAC  250

seq1  CATCATACTAAAGCTCTCTTTCACCAATAACCACGGGAGATAATATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACTAAAGCTCTCTTTCACCAATAACCACGGGAGATAATATAGAG  300

seq1  TCCCATAAAATGACAATAACAACTAACCTATTACAGGAGAAAGAAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAAATGACAATAACAACTAACCTATTACAGGAGAAAGAAAGCAT  350

seq1  GCAAATGCACGAGAAACATTACTAACAACCTAACCCAAGTTTGCTCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCACGAGAAACATTACTAACAACCTAACCCAAGTTTGCTCTATA  400

seq1  TGCACTCCCATTTTATAGACTTGGGTTTTTAACAAAGGAAGGCTGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCCATTTTATAGACTTGGGTTTTTAACAAAGGAAGGCTGGGAGA  450

seq1  CTTTCATTATACAAACATCTTGCTAAGTTATTGGCAACAGTAGTTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTATACAAACATCTTGCTAAGTTATTGGCAACAGTAGTTTGAGT  500

seq1  GTTTGGGGCTAAACACTAAAAATACTATTCCTGCCATTAAGTGTGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGCTAAACACTAAAAATACTATTCCTGCCATTAAGTGTGAAAGA  550

seq1  GGAACAGGTAGCCTCTAAGGTCCTTTAGTGTGAACAACTTCAGTAGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGTAGCCTCTAAGGTCCTTTAGTGTGAACAACTTCAGTAGGATG  600

seq1  ATATGGATATTCAGCTTAGAAACAGACTCCATAGGACCAGTTGAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATATTCAGCTTAGAAACAGACTCCATAGGACCAGTTGAGGCTGG  650

seq1  ACAGGGACTGTGATAGACTGGTATCCAGTCTACATAAAGGACCCAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTGTGATAGACTGGTATCCAGTCTACATAAAGGACCCAAATAA  700

seq1  CCTAGTATCAAACTCAACAGATAGTTTCCAAAAGAAGGCATACTAATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATCAAACTCAACAGATAGTTTCCAAAAGAAGGCATACTAATGGC  750

seq1  CACAGATATATACAAACATTCTCAATATCATTAATAATCAGAAAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATATACAAACATTCTCAATATCATTAATAATCAGAAAATTTTA  800

seq1  AATTAGAGCAAAAGTAGATGTTTCCTTGAAGGATAATTTCAAAAAACACA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTAGAGCAAAAGTAGATGTTTCCTTGAAGGATAATTTC-AAAAACACA  849

seq1  AAAAGTGTCAGTATAAGTATTAGTAGGAATTTAAGTTAGTTCAGCCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTCAGTATAAGTATTAGTAGGAATTTAAGTTAGTTCAGCCACTA  899

seq1  TAACAAACAGCATGTAGATTCCTCAAAAAGGTAAACAAAACAAAACAAAA  950
      |||||||||||||||||||||||| ||||||||||| |||||||||||| 
seq2  TAACAAACAGCATGTAGATTCCTC-AAAAGGTAAAC-AAACAAAACAAA-  946

seq1  CAAGACAAAACAAAACTCAGATCCAGCAATTCTACTTGTAGGTACATCAA  1000
        |||||||   ||||||||||||||||||||||||||||||||||||  
seq2  -CAGACAAA--CAAACTCAGATCCAGCAATTCTACTTGTAGGTACATC--  991

seq1  AAGAAATAATATATATATATATACCAAAGTGAGATCAGAATTTTCTATTA  1050
      |||||   |||||| | | | |||||||||||||||||||||||||||| 
seq2  AAGAATATATATAT-TTTTTTTACCAAAGTGAGATCAGAATTTTCTATT-  1039

seq1  AGTATCACATTGGTCACAATGACAAAGAAGCTTGGACAAATCCATGAAA-  1099
      ||||||||||||||||||||||||||||||||||||||| ||  ||||| 
seq2  AGTATCACATTGGTCACAATGACAAAGAAGCTTGGACAATTCATTGAAAA  1089

seq1  -GTGTGTGTGTGT  1111
       ||||||||||||
seq2  GGTGTGTGTGTGT  1102