BAC Information

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BAC

Clone NameB6Ng01-132D24
Chromosome1 (Build37)
Map Location 54,878,644 - 55,045,972
singlet/doubletdoublet
Overlap geneAnkrd44, Sf3b1
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
Downstream geneCoq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132D24.bB6Ng01-132D24.g
ACCDH933100DH933101
length1,1841,012
definitionDH933100|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D24, 5' end.DH933101|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,878,644 - 54,879,839)(55,044,969 - 55,045,972)
sequence
gaattccttgggtagagactaaatgatttagcccacatagagtgtattta
attttattttatattttatgtatttaagtattttgtctgcatgtgtggct
gtgcaccatgtatgcccctggtaccagcggaaagcagaagagagtatcag
atgcctgtgggagtggagttcagacagctgtgagctgccatgtgcattct
ggaaatagaacctgggtcctctggaagaacagtcagtgctctcaactgct
gagccatctctccaggctgctcatgagtggaattaaaaatgcattctatt
ttctaaagaactagtaatctgccctaacagatacccagataaattacaag
ctcactactctcatttgtcttgttctttaaaaagcccattcttgtaaaat
atcagtttctttttctctcatttgcatcttgagattaacattcctccacc
acctacattattttctgtagtcaaagtggtagcatgaatcatttcttccc
ctttgcttgctataagttctttgcttttaacttaagatgcattctattac
agtcacatatgagcccctcctttcacagaacagagaaaggaagcaaagtg
catgtgtacttgggtcaaactttgctgcaaatgataaatattacatgaat
gacgaaattggtttttgtataaaatgagtaaattaaaatcaacaacttgt
ggacaactcaactgtttgagactactaattagtatgtattgagcattaaa
tgatactgaagaatacttgctaatttcatttgctatactaatgtatagca
tgtatacaccatgtgcacatgcatatacatctgtgtgtgcgtgcataggt
tgctgttagtggttctttttaatgggaaataagcacctcacattttggtg
tcacataggagtcacaaatcttcgaagtgtagtctttcacagttgggaag
aaaggctctctaaagctacttcaggctgagaaggaagttacgacgattta
catgctgactcacttacagtatctctacactaaaacaagaagacgaacag
cgccatgaagtactactgctgctagagcacaagcaggctggggctatctg
agcagatgcaggcattgtctgtaggagcttgtctaatggacctcaaggtc
tatctgtaagagacctccctcctcttagacagcc
gaattcctgaacattacaactgttgagaggtgggacttgaggttaaaagt
tttgttctgaatggatggaattttgtgaaaagaaaacatgacttgtctct
tcacatactgactacaaataaaagtgatagtagaattgaaaatttggcaa
actttctgttgtgggggctgttattcataagaaaaaaaaggttcttgaat
attatactgcaaaatatatttgaatctcatatactcagttaatatatcaa
atttatttatagaaaatttagactcctgtcaaatctttttgtaattttca
tgtaaatttaatcaccagaataattttctattcattctttattgagatct
caactgttttagaaaggttttcaagttcataatattttgaagttcataaa
attttgaagttcataatatttgttgcttctatatttattttaaaaatact
gtgctttagagattgttttcaattctaaagaaatttttagaaagtgtgca
agttgaggtagtaacttgaaaattactaaaaagaatacttcttcagctgt
gaaacattgaaactttatcattaaataagttagatagcaaattatagtgt
tcagatttttttcctaatgcctttgaggggttgttaatatttttggcaga
agtatgaacactatttttggttgcactcagtatatgaataatagatttga
tattgtcctggatacaaattcagatgctgctagagataaaaatttcttat
ttgtgcaggtttaaaaacctagtagattttttctcttaaattgaattttt
gaatgaaatcataccagtttgagaacaaattttcattttgactttgtgac
tttaactatcaaatatttaaggttacagaatttaaaatgagattgactcc
tgagagtaattagttccgcatgtacaagtgaatataaaaaatgggactga
tttaaagagacttttccctttcattattacaggaccttgttcccagacag
acagcgagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_54878644_54879839
seq2: B6Ng01-132D24.b_47_1230

seq1  GAATTCCTTGGGTAGAGACTAAATGATTTAGCCCACATAGAGTGTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGTAGAGACTAAATGATTTAGCCCACATAGAGTGTATTTA  50

seq1  ATTTTATTTTATATTTTATGTATTTAAGTATTTTGTCTGCATGTGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATATTTTATGTATTTAAGTATTTTGTCTGCATGTGTGGCT  100

seq1  GTGCACCATGTATGCCCCTGGTACCAGCGGAAAGCAGAAGAGAGTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCATGTATGCCCCTGGTACCAGCGGAAAGCAGAAGAGAGTATCAG  150

seq1  ATGCCTGTGGGAGTGGAGTTCAGACAGCTGTGAGCTGCCATGTGCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGGGAGTGGAGTTCAGACAGCTGTGAGCTGCCATGTGCATTCT  200

seq1  GGAAATAGAACCTGGGTCCTCTGGAAGAACAGTCAGTGCTCTCAACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGAACCTGGGTCCTCTGGAAGAACAGTCAGTGCTCTCAACTGCT  250

seq1  GAGCCATCTCTCCAGGCTGCTCATGAGTGGAATTAAAAATGCATTCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGGCTGCTCATGAGTGGAATTAAAAATGCATTCTATT  300

seq1  TTCTAAAGAACTAGTAATCTGCCCTAACAGATACCCAGATAAATTACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGAACTAGTAATCTGCCCTAACAGATACCCAGATAAATTACAAG  350

seq1  CTCACTACTCTCATTTGTCTTGTTCTTTAAAAAGCCCATTCTTGTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTACTCTCATTTGTCTTGTTCTTTAAAAAGCCCATTCTTGTAAAAT  400

seq1  ATCAGTTTCTTTTTCTCTCATTTGCATCTTGAGATTAACATTCCTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCTTTTTCTCTCATTTGCATCTTGAGATTAACATTCCTCCACC  450

seq1  ACCTACATTATTTTCTGTAGTCAAAGTGGTAGCATGAATCATTTCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATTATTTTCTGTAGTCAAAGTGGTAGCATGAATCATTTCTTCCC  500

seq1  CTTTGCTTGCTATAAGTTCTTTGCTTTTAACTTAAGATGCATTCTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTGCTATAAGTTCTTTGCTTTTAACTTAAGATGCATTCTATTAC  550

seq1  AGTCACATATGAGCCCCTCCTTTCACAGAACAGAGAAAGGAAGCAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATATGAGCCCCTCCTTTCACAGAACAGAGAAAGGAAGCAAAGTG  600

seq1  CATGTGTACTTGGGTCAAACTTTGCTGCAAATGATAAATATTACATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACTTGGGTCAAACTTTGCTGCAAATGATAAATATTACATGAAT  650

seq1  GACGAAATTGGTTTTTGTATAAAATGAGTAAATTAAAATCAACAACTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAATTGGTTTTTGTATAAAATGAGTAAATTAAAATCAACAACTTGT  700

seq1  GGACAACTCAACTGTTTGAGACTACTAATTAGTATGTATTGAGCATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTCAACTGTTTGAGACTACTAATTAGTATGTATTGAGCATTAAA  750

seq1  TGATACTGAAGAATACTTGCTAATTTCATTTGCTATACTAATGTATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGAAGAATACTTGCTAATTTCATTTGCTATACTAATGTATAGCA  800

seq1  TGTATACACCATGTGCACATGCATATACATCTGTGTGTGCGTGCATAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACACCATGTGCACATGCATATACATCTGTGTGTGCGTGCATAGGT  850

seq1  TGCTGTTAGTGGTTCTTTTTAATGGGAAATAAGCACCTCACA-TTTGGTG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTGTTAGTGGTTCTTTTTAATGGGAAATAAGCACCTCACATTTTGGTG  900

seq1  TCACATAGGAGTCACAAATCTTCGAAGTGTAGTCTTTCACAGTT-GGAAG  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACATAGGAGTCACAAATCTTCGAAGTGTAGTCTTTCACAGTTGGGAAG  950

seq1  ACAAGGCTCTCTAAAGCTACTTCAGGCTGAGAAGGAAGTTACGACGATTT  998
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-AAGGCTCTCTAAAGCTACTTCAGGCTGAGAAGGAAGTTACGACGATTT  999

seq1  ACATGCTGACTCAACCTACCAGTATCTCTAACACTAAAACAAGAAGACGA  1048
      |||||||||||||  ||  |||||||||| ||||||||||||||||||| 
seq2  ACATGCTGACTCA--CTTACAGTATCTCT-ACACTAAAACAAGAAGACG-  1045

seq1  AACAGCGCCATGAAGTACTACTGCTGCTAAGAGCACAAGGCAGGGCTGGG  1098
      |||||||||||||||||||||||||||| ||||||||| ||| |||||||
seq2  AACAGCGCCATGAAGTACTACTGCTGCT-AGAGCACAA-GCA-GGCTGGG  1092

seq1  GCTATCTGAGGCAGTAGCAGGCATTGTCTGTAGGAGCTCTGTCTAATGGC  1148
      ||||||||| ||||  |||||||||||||||||||||| |||||||||| 
seq2  GCTATCTGA-GCAGATGCAGGCATTGTCTGTAGGAGCT-TGTCTAATGGA  1140

seq1  CTTCCAGGGTCTCATCTGTAA-AGACACTCCTCTCCTCTTTAGACAGCC  1196
      | | || ||||| |||||||| |||| |||| |||||| ||||||||||
seq2  CCT-CAAGGTCT-ATCTGTAAGAGAC-CTCC-CTCCTC-TTAGACAGCC  1184

seq1: chr1_55044969_55045972
seq2: B6Ng01-132D24.g_70_1081 (reverse)

seq1  TGCACTCGCTGTCTGTCTGTGAACAAGGTCCCTGTAATAATGGAAGGGAA  50
      ||||||||||||||||||| ||||||||| |||||||||||| |||||||
seq2  TGCACTCGCTGTCTGTCTGGGAACAAGGT-CCTGTAATAATGAAAGGGAA  49

seq1  AAGTCTCTTTAAATCAGTCCCA-TTTTTATATTCACTTGTACATGCGGAA  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGTCTCTTTAAATCAGTCCCATTTTTTATATTCACTTGTACATGCGGAA  99

seq1  CTAATTACTCTCAGGAGTCAATCTCATTTTAAATTCTGTAACCTTAAATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACTCTCAGGAGTCAATCTCATTTTAAATTCTGTAACCTTAAATA  149

seq1  TTTGATAGTT-AAGTCAC-AAGTCAAAATG-AAATTTGTTCTCAAACTGG  196
      |||||||||| ||||||| ||||||||||| |||||||||||||||||||
seq2  TTTGATAGTTAAAGTCACAAAGTCAAAATGAAAATTTGTTCTCAAACTGG  199

seq1  TATGATTTCATTCAAAAATTCAATTTAAGAG-AAAAATCTACTAGGTTTT  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGATTTCATTCAAAAATTCAATTTAAGAGAAAAAATCTACTAGGTTTT  249

seq1  TAAACCTGCACAAATAAG-AATTTTTATCTCTAGCAGCATCTGAATTTGT  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAACCTGCACAAATAAGAAATTTTTATCTCTAGCAGCATCTGAATTTGT  299

seq1  ATCCAGGAC-ATATC-AATCTATTATTCATATACTGAGTGCAACC-AAAA  341
      ||||||||| ||||| ||||||||||||||||||||||||||||| ||||
seq2  ATCCAGGACAATATCAAATCTATTATTCATATACTGAGTGCAACCAAAAA  349

seq1  TAGTGTTCATACTTTCTGCC-AAAATATTAACAACCCCTCAAAGGCATTA  390
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TAGTGTTCATAC-TTCTGCCAAAAATATTAACAACCCCTCAAAGGCATTA  398

seq1  GGAAAAAAATCTGAACACTATAATTTGCTATCTAACTTATTTAATGATAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAATCTGAACACTATAATTTGCTATCTAACTTATTTAATGATAA  448

seq1  AGTTTCAATGTTTCACAGCTGAAGAAGTATTCTTTTTAGTAATTTTCAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATGTTTCACAGCTGAAGAAGTATTCTTTTTAGTAATTTTCAAG  498

seq1  TTACTACCTCAACTTGCACACTTTCTAAAAATTTCTTTAGAATTGAAAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACCTCAACTTGCACACTTTCTAAAAATTTCTTTAGAATTGAAAAC  548

seq1  AATCTCTAAAGCACAGTATTTTTAAAATAAATATAGAAGCAACAAATATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAAAGCACAGTATTTTTAAAATAAATATAGAAGCAACAAATATT  598

seq1  ATGAACTTCAAAATTTTATGAACTTCAAAATATTATGAACTTGAAAACCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTCAAAATTTTATGAACTTCAAAATATTATGAACTTGAAAACCT  648

seq1  TTCTAAAACAGTTGAGATCTCAATAAAGAATGAATAGAAAATTATTCTGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACAGTTGAGATCTCAATAAAGAATGAATAGAAAATTATTCTGG  698

seq1  TGATTAAATTTACATGAAAATTACAAAAAGATTTGACAGGAGTCTAAATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAATTTACATGAAAATTACAAAAAGATTTGACAGGAGTCTAAATT  748

seq1  TTCTATAAATAAATTTGATATATTAACTGAGTATATGAGATTCAAATATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAATAAATTTGATATATTAACTGAGTATATGAGATTCAAATATA  798

seq1  TTTTGCAGTATAATATTCAAGAACCTTTTTTTTCTTATGAATAACAGCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTATAATATTCAAGAACCTTTTTTTTCTTATGAATAACAGCCC  848

seq1  CCACAACAGAAAGTTTGCCAAATTTTCAATTCTACTATCACTTTTATTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAGAAAGTTTGCCAAATTTTCAATTCTACTATCACTTTTATTTG  898

seq1  TAGTCAGTATGTGAAGAGACAAGTCATGTTTTCTTTTCACAAAATTCCAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTATGTGAAGAGACAAGTCATGTTTTCTTTTCACAAAATTCCAT  948

seq1  CCATTCAGAACAAAACTTTTAACCTCAAGTCCCACCTCTCAACAGTTGTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGAACAAAACTTTTAACCTCAAGTCCCACCTCTCAACAGTTGTA  998

seq1  ATGTTCAGGAATTC  1004
      ||||||||||||||
seq2  ATGTTCAGGAATTC  1012