BAC Information

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BAC

Clone NameB6Ng01-132K19
Chromosome1 (Build37)
Map Location 64,466,809 - 64,590,084
singlet/doubletdoublet
Overlap geneLOC100043124, Creb1
Upstream geneLOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream gene2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K19.bB6Ng01-132K19.g
ACCDH933417DH933418
length1,0871,122
definitionDH933417|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K19, 5' end.DH933418|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,466,809 - 64,467,908)(64,588,940 - 64,590,084)
sequence
gaattcacttgctgacactcacagatgctcagagagaacatttcatttcc
atttgatctgaccttgtgtatgataatggatcctctttaaagcagggaca
cttgtcgtcctccttagactgcacccctgagaactagtcccacagggttt
tagtgccttgccaaaggtcaccccaaggtctctttcagcaatcctaaaca
gatctgatcacatcatttgtagagtgtgctatctttgtatctatatatga
ctccacatattctatgaaggatttttcttactgttacctgagcatcctaa
actcagcatatgagactgaccagacaggaacatgcatccttattcattcc
aagtgactccagctgctgagtggaaatgctggtttcttggcatggtaaca
ggggaaaacaaaacaaaacgcagatatgttagatataggtgggatgtgaa
tgggtcacccttgtcctccacagccatttgctttgcttctgaggctggtt
tctttgccccaaactaaagcctgaacagaatcaacttcaaaattcagaca
aatttgaaataaactctattcactttccaaaagtactgaatcagaacatc
ctgatatattgatatatcacttagtcccagccctctaaaagttgctaagt
acatggatgggcagctgaaaggggacaagaagcatgcatttctctggatt
agaatcactggctccaagctataaactacctcacacagaccttcacctaa
atatcccttgctgaaccccctgcactgactcaaagtgaacttaagaaaat
ttctctgatgagctttttatcacattcacaagaaggcgccatctgatata
gagtaggaaaacaaaaataaacagacctgtaattctgagttacagctcca
gggacataacaaggttttccaatctcccaggtcataattaaccatgtaaa
gaattaaagagaggtcctggaggagtgcttaaactttttgtaaattttaa
acagtatgatctcatcgctgccctcagggttattcaaatttgacattagg
aaaattaaaataaaacagagcaagttctgaggaggag
gaattcttgatgaaatatttacaagtcagacatggaacagtgaaaactca
gctccctgaggtgggactgcatgaaggcaaggtcaaagaacacatattct
gcatttaaccagacaactggagatgctgagaagtctgtaaggaatttata
ggcttcagggctatcctcactgtcttcaatattataaaagtggagaactg
tctgtattgtcaacaataaagctctacagaatagaaagaaatatgcaagt
cattttaatacattgcttaccagtcatccagcaaatgaaaaatgtaagat
gcaacagattatacttaaaacagtccatggatagtctataaaactgataa
atagcatgtagacaatgatacaagctttatgtatttttactgtatttatt
ttttgacatcacggtttatcttggtacttcgcactgaatctggacatata
gaatgacatgcatatccactatatagtatcagaccgaatattgttcttta
tgtgtagttttgagaagacttattttgaattcagtgtttttttctttgat
tgtgacataatcaacaccaagtccagccttcgagggaggcgcgcttcttt
actaccgtgaccccgacttctcgagaagttattctgagcaacacaatctc
agcactatgcttaggttccagaggaagatgccactgtgtaaagcataagg
atgaaagggaatccaaagcacagaagactttttttaaggtataaaaataa
acttcctctttatctttaaaaaagaaaaaacaaaagacaaaacctgcaat
tacgctgggcctggcggcccacacctaaatcccagcacttggaaagcaga
ggcagactcatctctgagttcaaggccaggtctacactgagaaactctgt
ctcaggaaagaaaatcaattaaattatagtaaacatgtttttctgcttct
ctaatctgtacactctaaagaatactgctaaccttcctttaaatgtatgc
cctaaaaagaataatcactaagaaatgttctgtgttctgcacgatgatcc
tcagaagtaacgattaaacaccaagaacgtctcttgaagagctacatcta
gttagagatgatattgtatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64466809_64467908
seq2: B6Ng01-132K19.b_49_1135

seq1  GAATTCACTTGCTGACACTCACAGATGCTCAGAGAGAACATTTCATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCTGACACTCACAGATGCTCAGAGAGAACATTTCATTTCC  50

seq1  ATTTGATCTGACCTTGTGTATGATAATGGATCCTCTTTAAAGCAGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTGACCTTGTGTATGATAATGGATCCTCTTTAAAGCAGGGACA  100

seq1  CTTGTCGTCCTCCTTAGACTGCACCCCTGAGAACTAGTCCCACAGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCGTCCTCCTTAGACTGCACCCCTGAGAACTAGTCCCACAGGGTTT  150

seq1  TAGTGCCTTGCCAAAGGTCACCCCAAGGTCTCTTTCAGCAATCCTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTTGCCAAAGGTCACCCCAAGGTCTCTTTCAGCAATCCTAAACA  200

seq1  GATCTGATCACATCATTTGTAGAGTGTGCTATCTTTGTATCTATATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCACATCATTTGTAGAGTGTGCTATCTTTGTATCTATATATGA  250

seq1  CTCCACATATTCTATGAAGGATTTTTCTTACTGTTACCTGAGCATCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATATTCTATGAAGGATTTTTCTTACTGTTACCTGAGCATCCTAA  300

seq1  ACTCAGCATATGAGACTGACCAGACAGGAACATGCATCCTTATTCATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCATATGAGACTGACCAGACAGGAACATGCATCCTTATTCATTCC  350

seq1  AAGTGACTCCAGCTGCTGAGTGGAAATGCTGGTTTCTTGGCATGGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCCAGCTGCTGAGTGGAAATGCTGGTTTCTTGGCATGGTAACA  400

seq1  GGGGAAAACAAAACAAAACGCAGATATGTTAGATATAGGTGGGATGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAACAAAACAAAACGCAGATATGTTAGATATAGGTGGGATGTGAA  450

seq1  TGGGTCACCCTTGTCCTCCACAGCCATTTGCTTTGCTTCTGAGGCTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACCCTTGTCCTCCACAGCCATTTGCTTTGCTTCTGAGGCTGGTT  500

seq1  TCTTTGCCCCAAACTAAAGCCTGAACAGAATCAACTTCAAAATTCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCCAAACTAAAGCCTGAACAGAATCAACTTCAAAATTCAGACA  550

seq1  AATTTGAAATAAACTCTATTCACTTTCCAAAAGTACTGAATCAGAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAATAAACTCTATTCACTTTCCAAAAGTACTGAATCAGAACATC  600

seq1  CTGATATATTGATATATCACTTAGTCCCAGCCCTCTAAAAGTTGCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATATTGATATATCACTTAGTCCCAGCCCTCTAAAAGTTGCTAAGT  650

seq1  ACATGGATGGGCAGCTGAAAGGGGACAAGAAGCATGCATTTCTCTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGGGCAGCTGAAAGGGGACAAGAAGCATGCATTTCTCTGGATT  700

seq1  AGAATCACTGGCTCCAAGCTATAAACTACCTCACACAGACCTTCACCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACTGGCTCCAAGCTATAAACTACCTCACACAGACCTTCACCTAA  750

seq1  ATATCCCTTGCTGAACCCCCTGCACTGACTCAAAGTGAACTTAAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTTGCTGAACCCCCTGCACTGACTCAAAGTGAACTTAAGAAAAT  800

seq1  TTCTCTGATGAGCTTTTTATCACATTCACAAGAAGGCGCCATCTGATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATGAGCTTTTTATCACATTCACAAGAAGGCGCCATCTGATATA  850

seq1  GAGTAGGAAAACAAAAATAAACAGACCTGTAATTCTGAGTTACAGCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAAAACAAAAATAAACAGACCTGTAATTCTGAGTTACAGCTCCA  900

seq1  GGGACAATAACAAGGTTTTCCAATCTCCCAGGTCATAATTAACCATGTAA  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAC-ATAACAAGGTTTTCCAATCTCCCAGGTCATAATTAACCATGTAA  949

seq1  AGAATTAAAGAGAGGTCCTGGAGGGAGTGCTTAAACCTTTTTGTAAATTT  1000
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AGAATTAAAGAGAGGTCCTGGA-GGAGTGCTTAAA-CTTTTTGTAAATTT  997

seq1  TTAAAACAAGTAATGATCTCCATCGCTGCTCTCCAGGTTTATTCAAATTT  1050
      |  |||| ||| ||||||| ||||||||| || |||| ||||||||||||
seq2  T--AAAC-AGT-ATGATCT-CATCGCTGCCCT-CAGGGTTATTCAAATTT  1041

seq1  GGACAATTAGGAAAATTAAACATAAAACAGAGACAGTTCTGAAGGAGGAG  1100
       ||| ||||||||||||||| |||||||||||  ||||||| ||||||||
seq2  -GAC-ATTAGGAAAATTAAA-ATAAAACAGAGCAAGTTCTG-AGGAGGAG  1087

seq1: chr1_64588940_64590084
seq2: B6Ng01-132K19.g_65_1186 (reverse)

seq1  TTGATACAATATTTCATCTCTAACTAGATTGTAAGCTCTTCAAGAGGACC  50
      |||||||||||  ||||||||||||||| ||| |||||||||||| ||| 
seq2  TTGATACAATA--TCATCTCTAACTAGA-TGT-AGCTCTTCAAGA-GACG  45

seq1  GTCTTGTGTGTTTTAATCTGTTACTTCCTGGAGATCCATCGTGCAGGAAA  100
       ||||| ||| ||||||| ||||||| |||  ||| ||||||||||  ||
seq2  TTCTTG-GTG-TTTAATC-GTTACTT-CTGAGGAT-CATCGTGCAG--AA  88

seq1  CACAGAACATTTCTTTAGTGATTTATTCTTTTTAGGGCCATACATTTTAA  150
      ||||||||||||| ||||||| ||||||||||||||| |||||| |||||
seq2  CACAGAACATTTC-TTAGTGA-TTATTCTTTTTAGGG-CATACA-TTTAA  134

seq1  AGGAAGGGTTAGCAGTATTCTTTTAGAGTTGTACAGATTAGAGGAAGCAG  200
      ||||| |||||||||||||| ||||||| ||||||||||||| |||||||
seq2  AGGAA-GGTTAGCAGTATTC-TTTAGAG-TGTACAGATTAGA-GAAGCAG  180

seq1  AAAAAACATGTTTACTATAATTTAATTGATTTTTCTTTCCCTGAGACAGA  250
       |||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  -AAAAACATGTTTACTATAATTTAATTGA-TTTTCTTT-CCTGAGACAGA  227

seq1  GTTTCTCAGTGTAGACCTGGCCTTGAACTCAGAGATGAGTCTGCCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAGTGTAGACCTGGCCTTGAACTCAGAGATGAGTCTGCCTCTGC  277

seq1  TTTCCAAGTGCTGGGATTTAGGTGTGGGCCGCCAGGCCCAGCGTAATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGTGCTGGGATTTAGGTGTGGGCCGCCAGGCCCAGCGTAATTGC  327

seq1  AGGTTTTGTCTTTTGTTTTTTCTTTTTTAAAGATAAAGAGGAAGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGTCTTTTGTTTTTTCTTTTTTAAAGATAAAGAGGAAGTTTATT  377

seq1  TTTATACCTTAAAAAAAGTCTTCTGTGCTTTGGATTCCCTTTCATCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCTTAAAAAAAGTCTTCTGTGCTTTGGATTCCCTTTCATCCTTA  427

seq1  TGCTTTACACAGTGGCATCTTCCTCTGGAACCTAAGCATAGTGCTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACACAGTGGCATCTTCCTCTGGAACCTAAGCATAGTGCTGAGAT  477

seq1  TGTGTTGCTCAGAATAACTTCTCGAGAAGTCGGGGTCACGGTAGTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTCAGAATAACTTCTCGAGAAGTCGGGGTCACGGTAGTAAAGA  527

seq1  AGCGCGCCTCCCTCGAAGGCTGGACTTGGTGTTGATTATGTCACAATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCGCCTCCCTCGAAGGCTGGACTTGGTGTTGATTATGTCACAATCAA  577

seq1  AGAAAAAAACACTGAATTCAAAATAAGTCTTCTCAAAACTACACATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACACTGAATTCAAAATAAGTCTTCTCAAAACTACACATAAAG  627

seq1  AACAATATTCGGTCTGATACTATATAGTGGATATGCATGTCATTCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTCGGTCTGATACTATATAGTGGATATGCATGTCATTCTATAT  677

seq1  GTCCAGATTCAGTGCGAAGTACCAAGATAAACCGTGATGTCAAAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATTCAGTGCGAAGTACCAAGATAAACCGTGATGTCAAAAAATAA  727

seq1  ATACAGTAAAAATACATAAAGCTTGTATCATTGTCTACATGCTATTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAAAAATACATAAAGCTTGTATCATTGTCTACATGCTATTTATC  777

seq1  AGTTTTATAGACTATCCATGGACTGTTTTAAGTATAATCTGTTGCATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATAGACTATCCATGGACTGTTTTAAGTATAATCTGTTGCATCTT  827

seq1  ACATTTTTCATTTGCTGGATGACTGGTAAGCAATGTATTAAAATGACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCATTTGCTGGATGACTGGTAAGCAATGTATTAAAATGACTTG  877

seq1  CATATTTCTTTCTATTCTGTAGAGCTTTATTGTTGACAATACAGACAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTTTCTATTCTGTAGAGCTTTATTGTTGACAATACAGACAGTT  927

seq1  CTCCACTTTTATAATATTGAAGACAGTGAGGATAGCCCTGAAGCCTATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTTATAATATTGAAGACAGTGAGGATAGCCCTGAAGCCTATAA  977

seq1  ATTCCTTACAGACTTCTCAGCATCTCCAGTTGTCTGGTTAAATGCAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTACAGACTTCTCAGCATCTCCAGTTGTCTGGTTAAATGCAGAAT  1027

seq1  ATGTGTTCTTTGACCTTGCCTTCATGCAGTCCCACCTCAGGGAGCTGAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTTTGACCTTGCCTTCATGCAGTCCCACCTCAGGGAGCTGAGT  1077

seq1  TTTCACTGTTCCATGTCTGACTTGTAAATATTTCATCAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTTCCATGTCTGACTTGTAAATATTTCATCAAGAATTC  1122