BAC Information

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BAC

Clone NameB6Ng01-132M09
Chromosome1 (Build37)
Map Location 172,361,068 - 172,487,304
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132M09.bB6Ng01-132M09.g
ACCDH933491DH933492
length1,0121,059
definitionDH933491|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M09, 5' end.DH933492|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,361,068 - 172,362,073)(172,486,240 - 172,487,304)
sequence
gaattctccttttctgctttttcctgcctcctccttcccaaagaccaagt
aaaagaaaatcggtgaggtgtgctcagagctcatagctacacccggaaga
ttcaagcacttttctcaaaatttaagtcatttctctactgagtcccatca
gttgttactctctttgaatcagagctgagatggtgtatgtgtgtgtgtat
gtatgtgtgagttcatgtacgtacccctgtatgtgttactgacagtagct
cctaagacctcatacatattgggctatgcaaactaggccaagcaagcgct
ctaccactgagctctctatccgagctattctttttatttcttttaagatg
ccagcttcctgactgtaattttccgcaactcatggcatctagaatctaag
ctccattttactttgctcacacttggggcctgggagtgcgagagaaggct
tggctgggcattcacacttggggttgtcacacagccacagtatgctgctg
gctggggctgtggcctttgaaggctacactcggctgggtgtccaggatgt
ctcactcaggagctagctgatgatgctggctgtcaactgaaaacccagct
ggagctgccgccagcatgcctgcgcatggcctccccagcatatctggatc
tggccaatgtttcttagcagctcgtatccctcagagtgagcagtagcagc
ctggcctgagcttgcctcagaaaccacctattcagttgtttttttgttgg
ctgtaaacaagtcacttaagctcagcccagatttacagggagcagtcaga
gactttcgttcttggatgagatgagtgtcaaaagacctacacatttaaaa
atcttcccactggcttgtttgccgtcaaagtccctcatgtacatgaggtt
aggaaatttgtttattaccatacatatttctgaggtctagcaagttcgta
tatactaagacattctacaaataaaatttgtggtttaaggggttttgctt
gaatcgtttttt
gaattcattcctgagaaaaaggactccctcccgcaagaatgactcatttt
tattttgtttactgtattttaagacttttggagctctagtctcaaaatga
ataggatggtattacgaacagtggagagccctggcttgcttgcaagtgtg
aaatctgctctagggtcttaaatgatgtcaagtgaaagcaatgtcaacag
agtgacttggttgccagcaagctgttgcaggcagaggctttcctgacgga
tggggtacagagaggacgatacctgccaagtaggaggacgatgttcctgg
agaaaaatggacatgggatttttggatgctgctgcactccctcgttgttg
ttgagaagttgccctcttcctcagcaggatgagtcaagcctgactggaga
tggaggagaacttggacccgttgatctctgaagtcttccattctgcagac
ctgggagccttattgcctaggtaccattcagttcagaggcagtagacatg
ggtggtagtaaagattcagagaagatcccaaatgatgtccctttgggcgt
ggcatggtggtatcccattatacccctaactcttctcactgtcttgcagc
tagggaggcctggagtaatcaggggtctcttatttatcttggcgccttac
ttaaggtagctctagatttttaacctaactggtagtaactgtatgtctta
gagcctgtctgcctgcctctttggcagtttgggaacccctgtggtagtct
ctgaggatgtgaggtacttcagaactctttcttggtgtggccagcagaag
gattgtgtagtgggttgggtaccagcaaaaaacctcagaaaggaaggctt
gagttaccatctcaggagcttcttgtggaaggtgtgtgagaattggacac
tgaatttgattgcatagctaggctgcttctttcagtcatctttgtgtcag
ttgatgtatgtctaaacacctttgggggagttagaacagtgcctcctaga
gggccatcctatctcagttgttctttgctgggctttttaattagtgaatg
tatggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172361068_172362073
seq2: B6Ng01-132M09.b_49_1060

seq1  GAATTCTCCTTTTCTGCTTTTTCCTGCCTCCTCCTTCCCAAAGACCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTCTGCTTTTTCCTGCCTCCTCCTTCCCAAAGACCAAGT  50

seq1  AAAAGAAAATCGGTGAGGTGTGCTCAGAGCTCATAGCTACACCCGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATCGGTGAGGTGTGCTCAGAGCTCATAGCTACACCCGGAAGA  100

seq1  TTCAAGCACTTTTCTCAAAATTTAAGTCATTTCTCTACTGAGTCCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCACTTTTCTCAAAATTTAAGTCATTTCTCTACTGAGTCCCATCA  150

seq1  GTTGTTACTCTCTTTGAATCAGAGCTGAGATGGTGTATGTGTGTGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACTCTCTTTGAATCAGAGCTGAGATGGTGTATGTGTGTGTGTAT  200

seq1  GTATGTGTGAGTTCATGTACGTACCCCTGTATGTGTTACTGACAGTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGAGTTCATGTACGTACCCCTGTATGTGTTACTGACAGTAGCT  250

seq1  CCTAAGACCTCATACATATTGGGCTATGCAAACTAGGCCAAGCAAGCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCTCATACATATTGGGCTATGCAAACTAGGCCAAGCAAGCGCT  300

seq1  CTACCACTGAGCTCTCTATCCGAGCTATTCTTTTTATTTCTTTTAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGAGCTCTCTATCCGAGCTATTCTTTTTATTTCTTTTAAGATG  350

seq1  CCAGCTTCCTGACTGTAATTTTCCGCAACTCATGGCATCTAGAATCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGACTGTAATTTTCCGCAACTCATGGCATCTAGAATCTAAG  400

seq1  CTCCATTTTACTTTGCTCACACTTGGGGCCTGGGAGTGCGAGAGAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTACTTTGCTCACACTTGGGGCCTGGGAGTGCGAGAGAAGGCT  450

seq1  TGGCTGGGCATTCACACTTGGGGTTGTCACACAGCCACAGTATGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCATTCACACTTGGGGTTGTCACACAGCCACAGTATGCTGCTG  500

seq1  GCTGGGGCTGTGGCCTTTGAAGGCTACACTCGGCTGGGTGTCCAGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCTGTGGCCTTTGAAGGCTACACTCGGCTGGGTGTCCAGGATGT  550

seq1  CTCACTCAGGAGCTAGCTGATGATGCTGGCTGTCAACTGAAAACCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGGAGCTAGCTGATGATGCTGGCTGTCAACTGAAAACCCAGCT  600

seq1  GGAGCTGCCGCCAGCATGCCTGCGCATGGCCTCCCCAGCATATCTGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCCGCCAGCATGCCTGCGCATGGCCTCCCCAGCATATCTGGATC  650

seq1  TGGCCAATGTTTCTTAGCAGCTCGTATCCCTCAGAGTGAGCAGTAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATGTTTCTTAGCAGCTCGTATCCCTCAGAGTGAGCAGTAGCAGC  700

seq1  CTGGCCTGAGCTTGCCTCAGAAACCACCTATTCAGTTG-TGTTTTGTTGG  749
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  CTGGCCTGAGCTTGCCTCAGAAACCACCTATTCAGTTGTTTTTTTGTTGG  750

seq1  CTGTAAACAAGTCAC-TAAGCTCAGCCCAGATTTACAGGGAGCAGTCAGA  798
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGTAAACAAGTCACTTAAGCTCAGCCCAGATTTACAGGGAGCAGTCAGA  800

seq1  GAC-TTCG-TCTTGGATGAGATGAGTGTCAAAAGACCTACACATTTAAAA  846
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCGTTCTTGGATGAGATGAGTGTCAAAAGACCTACACATTTAAAA  850

seq1  ATCTTCCCACTGGCTTGTTTGCCGTCAAAGT-CCTCATGTACATGAGGTT  895
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTTCCCACTGGCTTGTTTGCCGTCAAAGTCCCTCATGTACATGAGGTT  900

seq1  AGGAAATTTGTTTATTACCATACATATCTCTGAAGTCTAGCAAGCTTCGT  945
      ||||||||||||||||||||||||||| ||||| |||||||||| |||||
seq2  AGGAAATTTGTTTATTACCATACATATTTCTGAGGTCTAGCAAG-TTCGT  949

seq1  ATATACT-AGACATCCAACAAATAGATTTTGTGGTTT-AGGGGTTTTGCT  993
      ||||||| |||||| | ||||||| | |||||||||| ||||||||||||
seq2  ATATACTAAGACATTCTACAAATAAAATTTGTGGTTTAAGGGGTTTTGCT  999

seq1  TGATTCGTTTTTT  1006
      ||| |||||||||
seq2  TGAATCGTTTTTT  1012

seq1: chr1_172486240_172487304
seq2: B6Ng01-132M09.g_68_1126 (reverse)

seq1  AGGTCCATACATATCACTGATGTTAAAAGCCCAAGCAAAGAACAACCTGA  50
      |||||||||||| ||||| || | |||||||| |||||||||||| ||||
seq2  AGGTCCATACAT-TCACTAAT-TAAAAAGCCC-AGCAAAGAACAA-CTGA  46

seq1  GATAGGGATGGCCCCTCTGGGAGGCACTGTTCTAAACTCCCC--AAGGTG  98
      |||| |||||| |||||| |||||||||||||| ||||||||  ||||||
seq2  GATA-GGATGG-CCCTCTAGGAGGCACTGTTCT-AACTCCCCCAAAGGTG  93

seq1  TTTAGACATACATCAACTGAACACCAAGATGACTGAAAGAAGCAGCCTAG  148
      ||||||||||||||||||| |||| |||||||||||||||||||||||| 
seq2  TTTAGACATACATCAACTG-ACACAAAGATGACTGAAAGAAGCAGCCTA-  141

seq1  GCTATGCAATCAAATTCAGTGTCCAATTCTCACACACCTTCCACAAGAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAATCAAATTCAGTGTCCAATTCTCACACACCTTCCACAAGAAG  191

seq1  CTCCTGAGATGGTAACTCAAGCCTTCCTTTCTGAGGTTTTTTGCTGGTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGATGGTAACTCAAGCCTTCCTTTCTGAGGTTTTTTGCTGGTAC  241

seq1  CCAA-CCACTACACAATCCTTCTGCTGGCCACACCAAGAAAGAGTTCTGA  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCACTACACAATCCTTCTGCTGGCCACACCAAGAAAGAGTTCTGA  291

seq1  AGTACCTCACATCCTCAGAGACTACCACAGGGGTTCCCAAACTGCCAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCACATCCTCAGAGACTACCACAGGGGTTCCCAAACTGCCAAAG  341

seq1  AGGCAGGCAGACAGGCTCTAAGACATACAGTTACTACCAGTTAGGTTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGACAGGCTCTAAGACATACAGTTACTACCAGTTAGGTTAAA  391

seq1  AATCTAGAGCTACCTTAAGTAAGGCGCCAAGATAAATAAGAGACCCCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAGCTACCTTAAGTAAGGCGCCAAGATAAATAAGAGACCCCTGA  441

seq1  TTACTCCAGGCCTCCCTAGCTGCAAGACAGTGAGAAGAGTTAGGGGTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCAGGCCTCCCTAGCTGCAAGACAGTGAGAAGAGTTAGGGGTATA  491

seq1  ATGGGATACCACCATGCCACGCCCAAAGGGACATCATTTGGGATCTTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATACCACCATGCCACGCCCAAAGGGACATCATTTGGGATCTTCTC  541

seq1  TGAATCTTTACTACCACCCATGTCTACTGCCTCTGAACTGAATGGTACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTACTACCACCCATGTCTACTGCCTCTGAACTGAATGGTACCT  591

seq1  AGGCAATAAGGCTCCCAGGTCTGCAGAATGGAAGACTTCAGAGATCAACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATAAGGCTCCCAGGTCTGCAGAATGGAAGACTTCAGAGATCAACG  641

seq1  GGTCCAAGTTCTCCTCCATCTCCAGTCAGGCTTGACTCATCCTGCTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGTTCTCCTCCATCTCCAGTCAGGCTTGACTCATCCTGCTGAGG  691

seq1  AAGAGGGCAACTTCTCAACAACAACGAGGGAGTGCAGCAGCATCCAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCAACTTCTCAACAACAACGAGGGAGTGCAGCAGCATCCAAAAA  741

seq1  TCCCATGTCCATTTTTCTCCAGGAACATCGTCCTCCTACTTGGCAGGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTCCATTTTTCTCCAGGAACATCGTCCTCCTACTTGGCAGGTAT  791

seq1  CGTCCTCTCTGTACCCCATCCGTCAGGAAAGCCTCTGCCTGCAACAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTCTCTGTACCCCATCCGTCAGGAAAGCCTCTGCCTGCAACAGCTT  841

seq1  GCTGGCAACCAAGTCACTCTGTTGACATTGCTTTCACTTGACATCATTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAACCAAGTCACTCTGTTGACATTGCTTTCACTTGACATCATTTA  891

seq1  AGACCCTAGAGCAGATTTCACACTTGCAAGCAAGCCAGGGCTCTCCACTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAGAGCAGATTTCACACTTGCAAGCAAGCCAGGGCTCTCCACTG  941

seq1  TTCGTAATACCATCCTATTCATTTTGAGACTAGAGCTCCAAAAGTCTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAATACCATCCTATTCATTTTGAGACTAGAGCTCCAAAAGTCTTAA  991

seq1  AATACAGTAAACAAAATAAAAATGAGTCATTCTTGCGGGAGGGAGTCCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTAAACAAAATAAAAATGAGTCATTCTTGCGGGAGGGAGTCCTT  1041

seq1  TTTCTCAGGAATGAATTC  1065
      ||||||||||||||||||
seq2  TTTCTCAGGAATGAATTC  1059