BAC Information

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BAC

Clone NameB6Ng01-132N14
Chromosome1 (Build37)
Map Location 166,822,983 - 166,876,507
singlet/doubletdoublet
Overlap geneXcl1
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream gene1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132N14.bB6Ng01-132N14.g
ACCDH933549DH933550
length1,165683
definitionDH933549|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N14, 5' end.DH933550|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,822,983 - 166,824,159)(166,875,844 - 166,876,507)
sequence
gaattcttcctgtgaaagataaactgagtgagaggtggaggatagaggac
aggcagttattgtttaacctcaggaagtagaagaccgtggaggctctgct
gaaatagacagcttcagacagaaacagagcatgcatttgaataagccaga
aaggaagaaaggtttcagggattatgggtaatcatagagaaagatgttaa
agataacaaatagttatgatttgaaagtttctctgatgttgattgtatcc
tttgaataacctaatgtctttaaaatccatagtgaactctcagcaaacat
tatttcaatcaaaacataattcaattctagatatattttcttttattaaa
tatatttttcaatatcatgactatgaagtatgcattctaatttagtatgg
gatctccagtacagtaagaattatcaacatttccctaagagtgatttttc
aaaacctagaggaccattttattgagaatcacgggaccatgtttacaatg
ttatactgaaaaatgaggaacaaaataatcaatattttcagctgtgaaac
aaatacttaagcatgcccaagtactaaagaaactagagaagaatagaatt
caaatgagtgtgctgcacgctccgtgcataaggctaaatcagggagcttt
caccattatatagattgatgtattcttagtcatatgcagataatcagccc
acacccatacctaaccatcacagagcctctaacatctttcctgttgtttc
aaagacaaaagactgacctccttccttccatccttgctcatttatcacat
tagctacactttagccatagcgatcttccgaggtatcaataggttgtata
tacttctctactccaagacacacatgttttccatgtcactgggaggacaa
tccaatggaaatctaacagagaataaggagccataagcagatgaatggtt
tccccaagacgctcttcatcaggtacgtgtacaagtacaggtccgaaatc
ctaataagacagtctggcaaatggtacgcctcatccagtcttctcagaat
caagcttgcctttgagttttcatgcttattctctcacactgtcatgtcag
tgagcagtcatttcatcaaggatctgtggtctttcttcttatttctcttt
gctcacaccctagcc
gaattcttggcagtaaaaggttaaaaaaaatgcctactatttttgtgttg
ttgttgttgttgaagatttaagttgtaggattttttaaaattatttttaa
tattttttacagtccagttgttattcccctcctagtccatgtaaggattt
tattacaaaaataaattgtatttccctaccttactgattcttagctaaat
gaaaatatattcttgaatattttccccttttaaaaattttctgcctcaag
agtaagcctttgtatatgaataggttgttttaacttctacctgtatagcc
tggcatcagaactcacaaaaaccaatggaggcaacaggcacatgatgaca
agcaacctgcccttattgatcactgatgggagagacagcaagaggcagct
ggagaaagtttggcacacgtgactaagttcagcctctgcggaaggtctga
cggaggtctgagctgaagagccaatggtttagaaagtattcatcaccacc
agtgatgacatttcactgaagctttggttactctcaataaaccacacaga
cacactgtggattccactaatgtgatttggttaactctcaagacagtgtg
tatcagtgtatcagcaagactttgtaacagaggctgcatgtgtgtgtgtg
tggtggtggtggggagctcattttctggttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166822983_166824159
seq2: B6Ng01-132N14.b_46_1210

seq1  GAATTCTTCCTGTGAAAGATAAACTGAGTGAGAGGTGGAGGATAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGTGAAAGATAAACTGAGTGAGAGGTGGAGGATAGAGGAC  50

seq1  AGGCAGTTATTGTTTAACCTCAGGAAGTAGAAGACCGTGGAGGCTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTATTGTTTAACCTCAGGAAGTAGAAGACCGTGGAGGCTCTGCT  100

seq1  GAAATAGACAGCTTCAGACAGAAACAGAGCATGCATTTGAATAAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGACAGCTTCAGACAGAAACAGAGCATGCATTTGAATAAGCCAGA  150

seq1  AAGGAAGAAAGGTTTCAGGGATTATGGGTAATCATAGAGAAAGATGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGGTTTCAGGGATTATGGGTAATCATAGAGAAAGATGTTAA  200

seq1  AGATAACAAATAGTTATGATTTGAAAGTTTCTCTGATGTTGATTGTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAAATAGTTATGATTTGAAAGTTTCTCTGATGTTGATTGTATCC  250

seq1  TTTGAATAACCTAATGTCTTTAAAATCCATAGTGAACTCTCAGCAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAACCTAATGTCTTTAAAATCCATAGTGAACTCTCAGCAAACAT  300

seq1  TATTTCAATCAAAACATAATTCAATTCTAGATATATTTTCTTTTATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATCAAAACATAATTCAATTCTAGATATATTTTCTTTTATTAAA  350

seq1  TATATTTTTCAATATCATGACTATGAAGTATGCATTCTAATTTAGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCAATATCATGACTATGAAGTATGCATTCTAATTTAGTATGG  400

seq1  GATCTCCAGTACAGTAAGAATTATCAACATTTCCCTAAGAGTGATTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCAGTACAGTAAGAATTATCAACATTTCCCTAAGAGTGATTTTTC  450

seq1  AAAACCTAGAGGACCATTTTATTGAGAATCACGGGACCATGTTTACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAGAGGACCATTTTATTGAGAATCACGGGACCATGTTTACAATG  500

seq1  TTATACTGAAAAATGAGGAACAAAATAATCAATATTTTCAGCTGTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGAAAAATGAGGAACAAAATAATCAATATTTTCAGCTGTGAAAC  550

seq1  AAATACTTAAGCATGCCCAAGTACTAAAGAAACTAGAGAAGAATAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAAGCATGCCCAAGTACTAAAGAAACTAGAGAAGAATAGAATT  600

seq1  CAAATGAGTGTGCTGCACGCTCCGTGCATAAGGCTAAATCAGGGAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTGTGCTGCACGCTCCGTGCATAAGGCTAAATCAGGGAGCTTT  650

seq1  CACCATTATATAGATTGATGTATTCTTAGTCATATGCAGATAATCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTATATAGATTGATGTATTCTTAGTCATATGCAGATAATCAGCCC  700

seq1  ACACCCATACCTAACCATCACAGAGCCTCTAACATCTTTCCTGTTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATACCTAACCATCACAGAGCCTCTAACATCTTTCCTGTTGTTTC  750

seq1  AAAGACAAAAGACTGACCTCCTTCCTTCCATCCTTGCTCATTTATCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAGACTGACCTCCTTCCTTCCATCCTTGCTCATTTATCACAT  800

seq1  TAGCTACACTTTAGCCATAGCGATCTTCCGAGGTATCAATAGGTTGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACACTTTAGCCATAGCGATCTTCCGAGGTATCAATAGGTTGTATA  850

seq1  TACTTCTCTACTCCAAGACACACATGTTTTCCATGTCACTGGGAGGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTACTCCAAGACACACATGTTTTCCATGTCACTGGGAGGACAA  900

seq1  TCCAATGGAAATCTAACAGAGAATAAGGAGCCATAAGCAGATGAATGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGAAATCTAACAGAGAATAAGGAGCCATAAGCAGATGAATGGTT  950

seq1  TCCCCAAGACGCTCTTCATCAGGTACGTGTTACAAGTACAGGTCCGAAAT  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCCAAGACGCTCTTCATCAGGTACGTG-TACAAGTACAGGTCCGAAAT  999

seq1  CCTAATAAGACAGTCTTGGCAAATTGGGTACGCCTCATCCAGTC-TCTCA  1049
      ||||||||||||||| ||||||||  |||||||||||||||||| |||||
seq2  CCTAATAAGACAGTC-TGGCAAAT--GGTACGCCTCATCCAGTCTTCTCA  1046

seq1  GAATCCAAAGCCTTGCCTTTGAGTTTTTCATTGCTTATTCTCTCACAACT  1099
      |||||  ||| |||||||||||| |||||| ||||||||||||||| |||
seq2  GAATC--AAG-CTTGCCTTTGAG-TTTTCA-TGCTTATTCTCTCAC-ACT  1090

seq1  GTCATGTCCAGTTGAGCAGTCATATCATCAA-GATCTGTGGGTTCTTCTT  1148
      ||||||| ||| ||||||||||| ||||||| ||||||| |||  |||||
seq2  GTCATGT-CAG-TGAGCAGTCATTTCATCAAGGATCTGT-GGTCTTTCTT  1137

seq1  CCTTTATTTCTC-TTGCTCACACCCTAGCC  1177
      |  ||||||||| |||||||||||||||||
seq2  C--TTATTTCTCTTTGCTCACACCCTAGCC  1165

seq1: chr1_166875844_166876507
seq2: B6Ng01-132N14.g_67_730 (reverse)

seq1  CCCCACCACCACCACACACACACACATGCAGCCTCTGTTACAAAGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCACCACCACACACACACACATGCAGCCTCTGTTACAAAGTCTTG  50

seq1  CTGATACACTGATACACACTGTCTTGAGAGTTAACCAAATCACATTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACACTGATACACACTGTCTTGAGAGTTAACCAAATCACATTAGTG  100

seq1  GAATCCACAGTGTGTCTGTGTGGTTTATTGAGAGTAACCAAAGCTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACAGTGTGTCTGTGTGGTTTATTGAGAGTAACCAAAGCTTCAGT  150

seq1  GAAATGTCATCACTGGTGGTGATGAATACTTTCTAAACCATTGGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCATCACTGGTGGTGATGAATACTTTCTAAACCATTGGCTCTTC  200

seq1  AGCTCAGACCTCCGTCAGACCTTCCGCAGAGGCTGAACTTAGTCACGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGACCTCCGTCAGACCTTCCGCAGAGGCTGAACTTAGTCACGTGT  250

seq1  GCCAAACTTTCTCCAGCTGCCTCTTGCTGTCTCTCCCATCAGTGATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTTTCTCCAGCTGCCTCTTGCTGTCTCTCCCATCAGTGATCAAT  300

seq1  AAGGGCAGGTTGCTTGTCATCATGTGCCTGTTGCCTCCATTGGTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGTTGCTTGTCATCATGTGCCTGTTGCCTCCATTGGTTTTTGT  350

seq1  GAGTTCTGATGCCAGGCTATACAGGTAGAAGTTAAAACAACCTATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGATGCCAGGCTATACAGGTAGAAGTTAAAACAACCTATTCATA  400

seq1  TACAAAGGCTTACTCTTGAGGCAGAAAATTTTTAAAAGGGGAAAATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGCTTACTCTTGAGGCAGAAAATTTTTAAAAGGGGAAAATATTC  450

seq1  AAGAATATATTTTCATTTAGCTAAGAATCAGTAAGGTAGGGAAATACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATATTTTCATTTAGCTAAGAATCAGTAAGGTAGGGAAATACAAT  500

seq1  TTATTTTTGTAATAAAATCCTTACATGGACTAGGAGGGGAATAACAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTAATAAAATCCTTACATGGACTAGGAGGGGAATAACAACTG  550

seq1  GACTGTAAAAAATATTAAAAATAATTTTAAAAAATCCTACAACTTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAAAAATATTAAAAATAATTTTAAAAAATCCTACAACTTAAATC  600

seq1  TTCAACAACAACAACAACACAAAAATAGTAGGCATTTTTTTTAACCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAACAACAACAACACAAAAATAGTAGGCATTTTTTTTAACCTTTT  650

seq1  ACTGCCAAGAATTC  664
      ||||||||||||||
seq2  ACTGCCAAGAATTC  664