BAC Information

Click to search

BAC

Clone NameB6Ng01-133A07
Chromosome1 (Build37)
Map Location 3,678,106 - 3,693,166
singlet/doubletdoublet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133A07.bB6Ng01-133A07.g
ACCDH933679DH933680
length1,1831,154
definitionDH933679|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A07, 5' end.DH933680|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,678,106 - 3,679,076)(3,691,993 - 3,693,166)
sequence
gaattctcaactaaggaataccgaatggctgagaagcacctaaaggaatg
ttcaacatctttagtcatcagggaaatgcaaaccaaaacaactcagaatt
ctacctcacactaaggacatccacacaaagtgtggaacagagactgaagc
aaaggacatccagagattgccccacctagagatccattccatatacaatt
atcaaacccagatactattgtgaatgccaagaagtgcttgctgataagag
tctgatatagctgtctcttgaaaggttctcccagagcccgataaatacag
aggtagatgctgacagccaaccattggactgagcactgggtctccaatgg
aggagttggagaaaggactgagggaactgaaggtgtttgcaatcctatag
gaagaacaacaatatcaaccaacctgactacccccacccccctgagctcc
cagggactaaaccaccaaccaaacagtacacatggagggacccatggctc
caaatgcataagtagcagagaatggccttgaaaaacatcaatggcaagag
agaaccttggtcctgtgaaagctctatgccccagtgtggtagaataccag
gacagggaagcccgattagggaaacaccttcatagaagcaggggaaaagg
gaatggggcagggggtttccaggaacaggcaggggtgggaaccaggaaag
gagataacatttgaaatgtaaataaagacaatatctaataataaaaacaa
acaaacaaaccaaaacagtttcaacaaatgcagccttcatgtaaagagaa
gcttaggcactggatctagggtgaaccagaggctctagctgttgattact
gaatgcctctgctattgcttgaacaagagggaaaattgattcttcctaaa
ataccatggtgaaacttaggactctggcactcagatcttctgtgcttagg
atcccactgaggtgatagtgctgttaatcaagtctcattactatacacac
acctgagctgggtctgtaagaaagatgagttttagctcactatatggatg
ggagagacagatgggcatatgattaagcttctatagtactgatgctagtg
cctctggtggtggggcaatatgtagaaaccactgtaagaggagcgaatgc
ttgacgattggtctgtactacaactaggttcta

gaattcacatttcacaagactgtttcaccttgggttaggactgtggcttt
gacaattccctagttcttatgaatctgtctttttctgcaatttaatcatg
ttttatttagtaaataagacaagctgtttcatactccattttagaaattc
tactggctctgcatgtgccatgtttcactactccattaagtaaacagcca
gttctgtagacattctcatcaccttcctacctccaaaaatatccaggcct
cagaggattaatcatacatatcttatatcctcatttaagcttatacatat
tgctaatatatttttcaaactgtagagaacgcaaagtaatcactccataa
gctgacatcccttgagtgttgacatgacctcatacagatttcatttgatt
ttaagagatgaattgaagtgaaaatgcaggtatatttaaaatgttgtata
aattacatttaagctatgtgcaaatgttgtagaaaaaaatgaataaataa
tttcatgtttagttctgcctctaatatgtctctacaagtatatgtaaata
catatatatgtatctatatttactcattcatttttgatgttcaaatgctt
ttgttcaaagaattttggatatcataaacccaacctgtagtaatagtcat
atctgtgcaccacacaggaataaatcttttgaagaaataacctacaattt
cttcacacgttattcttacttaccaggcattcatttaattatctataaat
atgtatgtaaaattgttgtctataattttattttattttatttcatttat
ttatttgtctaatatttatagatttatacctgtcatccaaaaagatccaa
aaatataacccattttattttcaggtaaggaaacgaaagctcatagaatt
aacatcacagggaactcaagtcaaaccaatatctaatattccagtacaaa
atgaatcagttagttaacctcaactccaagatcatttaaagcattggtac
agtacatgatgatcaattctgtggataatgaagaattcatcgaagaagtt
atgatcaccctagtattttgtgatgttaacacaaacctgatgatcactca
tgaaatattattgataaaaggaacagacctaagaagaagcgtacttcttg
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3678106_3679076
seq2: B6Ng01-133A07.b_302_1229

seq1  TATAGCTGTCTCTTGAAAGGTTCTCCCAGAGCCCGATAAATACAGAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTCTCTTGAAAGGTTCTCCCAGAGCCCGATAAATACAGAGGTA  50

seq1  GATGCTGACAGCCAACCATTGGACTGAGCACTGGGTCTCCAATGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACAGCCAACCATTGGACTGAGCACTGGGTCTCCAATGGAGGAG  100

seq1  TTGGAGAAAGGACTGAGGGAACTGAAGGTGTTTGCAATCCTATAGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAAGGACTGAGGGAACTGAAGGTGTTTGCAATCCTATAGGAAGA  150

seq1  ACAACAATATCAACCAACCTGACTACCCCCACCCCCCTGAGCTCCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATATCAACCAACCTGACTACCCCCACCCCCCTGAGCTCCCAGGG  200

seq1  ACTAAACCACCAACCAAACAGTACACATGGAGGGACCCATGGCTCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCACCAACCAAACAGTACACATGGAGGGACCCATGGCTCCAAAT  250

seq1  GCATAAGTAGCAGAGAATGGCCTTGAAAAACATCAATGGCAAGAGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTAGCAGAGAATGGCCTTGAAAAACATCAATGGCAAGAGAGAAC  300

seq1  CTTGGTCCTGTGAAAGCTCTATGCCCCAGTGTGGTAGAATACCAGGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTGTGAAAGCTCTATGCCCCAGTGTGGTAGAATACCAGGACAG  350

seq1  GGAAGCCCGATTAGGGAAACACCTTCATAGAAGCAGGGGAAAAGGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCGATTAGGGAAACACCTTCATAGAAGCAGGGGAAAAGGGAATG  400

seq1  GGGCAGGGGGTTTCCAGGAACAGGCAGGGGTGGGAACCAGGAAAGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGGTTTCCAGGAACAGGCAGGGGTGGGAACCAGGAAAGGAGAT  450

seq1  AACATTTGAAATGTAAATAAAGACAATATCTAATAATAAAAACAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGAAATGTAAATAAAGACAATATCTAATAATAAAAACAAACAAA  500

seq1  CAAACCAAAACAGTTTCAACAAATGCAGCCTTCATGTAAAGAGAAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAACAGTTTCAACAAATGCAGCCTTCATGTAAAGAGAAGCTTA  550

seq1  GGCACTGGATCTAGGGTGAACCAGAGGCTCTAGCTGTTGATTACTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGATCTAGGGTGAACCAGAGGCTCTAGCTGTTGATTACTGAATG  600

seq1  CCTCTGCTATTGCTTGAACAAGAGGGAAAATTGATTCTTCCTAAAATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTATTGCTTGAACAAGAGGGAAAATTGATTCTTCCTAAAATACC  650

seq1  ATGGTGAAAACTTAGGACTCTGGCACTCAGATCTTCTGTGCTTAGGATCC  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTG-AAACTTAGGACTCTGGCACTCAGATCTTCTGTGCTTAGGATCC  699

seq1  CACTGAGGTGATAGGTGCTGTTAATCAAGTTCTCATTACTATAACAACAC  750
      ||||||||||||| ||||||||||||||| |||||||||||||   ||||
seq2  CACTGAGGTGATA-GTGCTGTTAATCAAG-TCTCATTACTATA--CACAC  745

seq1  ACCTGAAGCTGGGTCTGTAAAGAAAAGATGAGTTTTTAGCTCACTATTAT  800
      ||||| ||||||||||||||   ||||||||| ||||||||||||| |||
seq2  ACCTG-AGCTGGGTCTGTAA--GAAAGATGAG-TTTTAGCTCACTA-TAT  790

seq1  GGATGGGAGAAGAACAAGATTGGGCATATGGATTAAGCTCCTAATAAGTA  850
      ||||||||| |||   ||| ||||||||| ||||||||| |||   ||||
seq2  GGATGGGAG-AGA--CAGA-TGGGCATAT-GATTAAGCTTCTA--TAGTA  833

seq1  CTGAATGCTAGGTGGCCTCTTGGTGTGTGGGGGGCAAATATATGTTAGAA  900
      ||| |||||||   ||||| |||||   | ||||||   ||||| |||||
seq2  CTG-ATGCTAG--TGCCTC-TGGTG---GTGGGGCA---ATATG-TAGAA  872

seq1  AACACACCTGTAAGAGGAAGCCAGAGAATTGCTTGAGCAGTTGGGTCTGT  950
      | ||   ||||||||||     || ||| |||||||   | | |||||||
seq2  ACCA---CTGTAAGAGG-----AGCGAA-TGCTTGA--CGATTGGTCTGT  911

seq1  ACTACAAACTCAGAGGTTCTA  971
      ||||| ||||   ||||||||
seq2  ACTAC-AACT---AGGTTCTA  928


seq1: chr1_3691993_3693166
seq2: B6Ng01-133A07.g_68_1221 (reverse)

seq1  AAAACAAGAAGTACCCGCTTTCCTTTCTTGGGTCTGTTCTTTTTATTCAT  50
      |||||||||||||  |||||    ||||| ||||||||| ||||||  ||
seq2  AAAACAAGAAGTA--CGCTT---CTTCTTAGGTCTGTTCCTTTTATCAAT  45

seq1  AATAATTTCTATGAGTTGATCATCAGGTTTGTGTTACAAATCAC-AAATA  99
      ||| ||||| ||||| |||||||||||||||||||| | ||||| |||||
seq2  AAT-ATTTC-ATGAG-TGATCATCAGGTTTGTGTTA-ACATCACAAAATA  91

seq1  CTAGGGGTGATCATAACTTCTTTCGATGAAATTCTTCATTAATTCCACAA  149
      ||| |||||||||||||||| ||||||| ||||||||||||  ||||| |
seq2  CTA-GGGTGATCATAACTTC-TTCGATG-AATTCTTCATTA--TCCAC-A  135

seq1  GAATTGATCATCATGTTACTTGTACCAATGCTTTAAATGATCTTGGAGTT  199
      ||||||||||||||| ||| |||||||||||||||||||||||||||| |
seq2  GAATTGATCATCATG-TAC-TGTACCAATGCTTTAAATGATCTTGGAG-T  182

seq1  TGAGGTTAACTAACTGATTTCATTTTGTACTGGAATATTAGATATTGGTT  249
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TGAGGTTAACTAACTGA-TTCATTTTGTACTGGAATATTAGATATTGG-T  230

seq1  TTGACTTTGAGTTCCCTGTGATGTTAATTCTATGAGCCTTCGTTTCCTTA  299
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAC-TTGAGTTCCCTGTGATGTTAATTCTATGAGCTTTCGTTTCCTTA  279

seq1  CCTGAAAATAAAATGGGTTATATTTTTGGATCTTTTTGGATGACAGGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATAAAATGGGTTATATTTTTGGATCTTTTTGGATGACAGGTAT  329

seq1  AAATCTATAAATATTAGACAAATAAATAAATGAAATAAAATAAAATAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATAAATATTAGACAAATAAATAAATGAAATAAAATAAAATAAAA  379

seq1  TTATAGACAACAATTTTACATACATATTTATAGATAATTAAATGAATGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACAACAATTTTACATACATATTTATAGATAATTAAATGAATGCC  429

seq1  TGGTAAGTAAGAATAACGTGTGAAGAAATTGTAGGTTATTTCTTCAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTAAGAATAACGTGTGAAGAAATTGTAGGTTATTTCTTCAAAAG  479

seq1  ATTTATTCCTGTGTGGTGCACAGATATGACTATTACTACAGGTTGGGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCCTGTGTGGTGCACAGATATGACTATTACTACAGGTTGGGTTT  529

seq1  ATGATATCCAAAATTCTTTGAACAAAAGCATTTGAACATCAAAAATGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCCAAAATTCTTTGAACAAAAGCATTTGAACATCAAAAATGAAT  579

seq1  GAGTAAATATAGATACATATATATGTATTTACATATACTTGTAGAGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATATAGATACATATATATGTATTTACATATACTTGTAGAGACAT  629

seq1  ATTAGAGGCAGAACTAAACATGAAATTATTTATTCATTTTTTTCTACAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGCAGAACTAAACATGAAATTATTTATTCATTTTTTTCTACAAC  679

seq1  ATTTGCACATAGCTTAAATGTAATTTATACAACATTTTAAATATACCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACATAGCTTAAATGTAATTTATACAACATTTTAAATATACCTGC  729

seq1  ATTTTCACTTCAATTCATCTCTTAAAATCAAATGAAATCTGTATGAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTTCAATTCATCTCTTAAAATCAAATGAAATCTGTATGAGGTC  779

seq1  ATGTCAACACTCAAGGGATGTCAGCTTATGGAGTGATTACTTTGCGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACACTCAAGGGATGTCAGCTTATGGAGTGATTACTTTGCGTTCT  829

seq1  CTACAGTTTGAAAAATATATTAGCAATATGTATAAGCTTAAATGAGGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTTGAAAAATATATTAGCAATATGTATAAGCTTAAATGAGGATA  879

seq1  TAAGATATGTATGATTAATCCTCTGAGGCCTGGATATTTTTGGAGGTAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATGTATGATTAATCCTCTGAGGCCTGGATATTTTTGGAGGTAGG  929

seq1  AAGGTGATGAGAATGTCTACAGAACTGGCTGTTTACTTAATGGAGTAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGAGAATGTCTACAGAACTGGCTGTTTACTTAATGGAGTAGTG  979

seq1  AAACATGGCACATGCAGAGCCAGTAGAATTTCTAAAATGGAGTATGAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGCACATGCAGAGCCAGTAGAATTTCTAAAATGGAGTATGAAAC  1029

seq1  AGCTTGTCTTATTTACTAAATAAAACATGATTAAATTGCAGAAAAAGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTTATTTACTAAATAAAACATGATTAAATTGCAGAAAAAGACA  1079

seq1  GATTCATAAGAACTAGGGAATTGTCAAAGCCACAGTCCTAACCCAAGGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAAGAACTAGGGAATTGTCAAAGCCACAGTCCTAACCCAAGGTG  1129

seq1  AAACAGTCTTGTGAAATGTGAATTC  1174
      |||||||||||||||||||||||||
seq2  AAACAGTCTTGTGAAATGTGAATTC  1154


| Home | SequenceCutter | Blast | Download |