BAC Information

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BAC

Clone NameB6Ng01-133D05
Chromosome1 (Build37)
Map Location 175,329,525 - 175,477,299
singlet/doubletdoublet
Overlap geneAim2, EG240921, BC094916
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneLOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133D05.bB6Ng01-133D05.g
ACCDH933808DH933809
length3101,089
definitionDH933808|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D05, 5' end.DH933809|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,476,984 - 175,477,299)(175,329,525 - 175,330,622)
sequence
cacacattctcccaccacaaataatgatggacataaatcagatattaata
ggggaaaatttctagctttgtttatcaactgattggttccccacctaatt
tttccagtgccacattttgtatttaactctcttttgcatgcatactcttg
gacaacactttggaatagaaagaaaaagatcattcacttacacaggaata
tcctgtttagggaattgttctctctctttctctctttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctc
gaattcatggacatcatcatacctcagcttgctgattgctgggatgacag
gcatgtgccactgcacctggtatataatttaaaaaatgttttatttcagg
ttgcaatacatttttaataatctttgaaattaaaatataatgacatcatt
tcccctaccctttcctccctcacttcttttgctctccctcaaatttaaat
ttatggcctccttttatttaatacatagaacaacacagtgaagtttatat
atataacagtccacaaaatatatatgttggtatatgtgtgtgtacattat
gcatacacacacacacatatatgtgtatatatatatatatatatatacac
acacattatatatgtaacttttatgtatataatttcaggattgatcactt
gctattaagataccaagagtatttctagggaagactatttctcccactct
cagaattccttagtcacctgtaatttttatctaggtttgaggcctcagga
agtttgctgtaattctgtgtctcctagaaatgtcagagaccttgcatcca
tggctcatctcaccaacatggctgcctaaacaagacctgaagaacatcac
caataggcatgctaacatggaagtgggaaaccttagaaggtatcaaccct
agaaagccgtcaatcttaacctgagtccactgttaaaaacctttctctca
catctttaggtcatgtaactgaagtgtgtttcaatttctaattttcatta
agtcactcattccttcaatgtttttttcagccaatgagagatcagacata
gcttattctaattattttctttcctatagtcagtcaataactctaatgat
cactgtaaatatacaaatttcaggcaaatccatgatttagagttattgcc
agtataaaatattctgaataatgctacagggaaaagtgtgaccatttact
taaccattattgtgagtactgagttgggtcagagtctgagagcattaggg
ttaggtagcatgaagcaagcatgaccctgacttactgagttgatgtagta
gggaagaaggtatcattcagtcaccccaggctgatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175476984_175477299
seq2: B6Ng01-133D05.b_50_365 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAACAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAACAATTCC  100

seq1  CTAAACAGGATATTCCTGTGTAAGTGAATGATCTTTTTCTTTCTATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGGATATTCCTGTGTAAGTGAATGATCTTTTTCTTTCTATTCCA  150

seq1  AAGTGTTGTCCAAGAGTATGCATGCAAAAGAGAGTTAAATACAAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGTCCAAGAGTATGCATGCAAAAGAGAGTTAAATACAAAATGTG  200

seq1  GCACTGGAAAAATTAGGTGGGGAACCAATCAGTTGATAAACAAAGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGAAAAATTAGGTGGGGAACCAATCAGTTGATAAACAAAGCTAGA  250

seq1  AATTTTCCCCTATTAATATCTGATTTATGTCCATCATTATTTGTGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCCTATTAATATCTGATTTATGTCCATCATTATTTGTGGTGGG  300

seq1  AGAATGTGTGGAATTC  316
      ||||||||||||||||
seq2  AGAATGTGTGGAATTC  316

seq1: chr1_175329525_175330622
seq2: B6Ng01-133D05.g_67_1155

seq1  GAATTCATGGACATCATCATACCTCAGCTTGCTGATTGCTGGGATGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGACATCATCATACCTCAGCTTGCTGATTGCTGGGATGACAG  50

seq1  GCATGTGCCACTGCACCTGGTATATAATTTAAAAAATGTTTTATTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCACTGCACCTGGTATATAATTTAAAAAATGTTTTATTTCAGG  100

seq1  TTGCAATACATTTTTAATAATCTTTGAAATTAAAATATAATGACATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATACATTTTTAATAATCTTTGAAATTAAAATATAATGACATCATT  150

seq1  TCCCCTACCCTTTCCTCCCTCACTTCTTTTGCTCTCCCTCAAATTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCTTTCCTCCCTCACTTCTTTTGCTCTCCCTCAAATTTAAAT  200

seq1  TTATGGCCTCCTTTTATTTAATACATAGAACAACACAGTGAAGTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCTCCTTTTATTTAATACATAGAACAACACAGTGAAGTTTATAT  250

seq1  ATATAACAGTCCACAAAATATATATGTTGGTATATGTGTGTGTACATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAGTCCACAAAATATATATGTTGGTATATGTGTGTGTACATTAT  300

seq1  GCATACACACACACACATATATGTGTATATATATATATATATATATACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACACACACACACATATATGTGTATATATATATATATATATATACAC  350

seq1  ACACATTATATATGTAACTTTTATGTATATAATTTCAGGATTGATCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATATATGTAACTTTTATGTATATAATTTCAGGATTGATCACTT  400

seq1  GCTATTAAGATACCAAGAGTATTTCTAGGGAAGACTATTTCTCCCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAGATACCAAGAGTATTTCTAGGGAAGACTATTTCTCCCACTCT  450

seq1  CAGAATTCCTTAGTCACCTGTAATTTTTATCTAGGTTTGAGGCCTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCCTTAGTCACCTGTAATTTTTATCTAGGTTTGAGGCCTCAGGA  500

seq1  AGTTTGCTGTAATTCTGTGTCTCCTAGAAATGTCAGAGACCTTGCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGTAATTCTGTGTCTCCTAGAAATGTCAGAGACCTTGCATCCA  550

seq1  TGGCTCATCTCACCAACATGGCTGCCTAAACAAGACCTGAAGAACATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATCTCACCAACATGGCTGCCTAAACAAGACCTGAAGAACATCAC  600

seq1  CAATAGGCATGCTAACATGGAAGTGGGAAACCTTAGAAGGTATCAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGCATGCTAACATGGAAGTGGGAAACCTTAGAAGGTATCAACCCT  650

seq1  AGAAAGCCGTCAATCTTAACCTGAGTCCACTGTTAAAAACCTTTCTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCGTCAATCTTAACCTGAGTCCACTGTTAAAAACCTTTCTCTCA  700

seq1  CATCTTTAGGTCATGTAACTGAAGTGTG-TTCAATTTCTAATTTTCATTA  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCTTTAGGTCATGTAACTGAAGTGTGTTTCAATTTCTAATTTTCATTA  750

seq1  AGTCACTCATTCCTTCAATGTTTTTTTCAGCCAATGAGAGATCAGACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCATTCCTTCAATGTTTTTTTCAGCCAATGAGAGATCAGACATA  800

seq1  GCTTATTCTAATTATTTTCTTTCCTATAGTTCAGTCAATAACTCTAATGA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTATTCTAATTATTTTCTTTCCTATAG-TCAGTCAATAACTCTAATGA  849

seq1  TCACTGTAAATATACAAA-TTCAGGCAAATCCATGATTTAGAG-TATTGC  897
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TCACTGTAAATATACAAATTTCAGGCAAATCCATGATTTAGAGTTATTGC  899

seq1  CAGTATAAAATATTCTGAATAATGCTACAAGGGAAAAGTGTGACCATTTA  947
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTATAAAATATTCTGAATAATGCTAC-AGGGAAAAGTGTGACCATTTA  948

seq1  CTTAACCAGTATTTGTGAAGTACCTGAGTTGGGTCAGAGTCTGAGAGGCA  997
      |||||||| || ||||| |||| ||||||||||||||||||||||| |||
seq2  CTTAACCATTA-TTGTG-AGTA-CTGAGTTGGGTCAGAGTCTGAGA-GCA  994

seq1  CTAGGGTAAGGTAGGCATGAAGCAAGCATGACCCTGGACCTGACTGAGTT  1047
       |||||| ||||| ||||||||||||||||||||||   || ||||||||
seq2  TTAGGGTTAGGTA-GCATGAAGCAAGCATGACCCTG--ACTTACTGAGTT  1041

seq1  GATGTAGTATGGAAGACAGGTATCATTCAGTCACCCCAGGGCATGATGGG  1097
      ||||||||| |||||| |||||||||||||||||||||||   |||||||
seq2  GATGTAGTAGGGAAGA-AGGTATCATTCAGTCACCCCAGG--CTGATGGG  1088

seq1  G  1098
      |
seq2  G  1089