BAC Information

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BAC

Clone NameB6Ng01-133G15
Chromosome1 (Build37)
Map Location 19,225,673 - 19,357,321
singlet/doubletdoublet
Overlap geneTcfap2b, LOC100040198, LOC226901
Upstream geneEG654460, Defb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133G15.bB6Ng01-133G15.g
ACCDH933967DH933968
length1,0441,076
definitionDH933967|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G15, 5' end.DH933968|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,225,673 - 19,226,722)(19,355,836 - 19,357,321)
sequence
gaattccagcaggggcgggacactgcagaatgcattttaagggagtcgag
taaggtatcttggctttgggacctatattgtaatggtattgtctttactg
gaaaaatggattccatttccttgggctctttggggactggatgttttaat
gggggaaagaagtagttttgctgagtgattggggaagacagtctataaac
taccatgactctgctttatgaatgaaacagttttccttctcagacacaca
ggtattttggcataaaatggtacacacacacacacacacacacacacaca
cacacacacacacaccagaaacacaaggcaaagggaacgagattgtattt
caactttgaattcctgtcttgatttattgggaatattcctaatggatgaa
gttccatgaatttaatgtatctctcttctcttagtccaactttttactgt
accccatcttaatattaccacgaagtaaaaccggcacctttagcaagttc
aaggagtagagtatttgattggtgcacacatttagtttgggtacacttat
tttttttcacctacctagacgggaactttataaaatccattaggatatat
gttcagatgttttctgtgatttacacagtcccttcccccagtagtctgga
ctctcagtattcctatctttttcaatccactttgaagcaagggaaggggt
tgaagttttagggaccctctgagggaatcgctcaaaggatgaaggttgta
aacaaaaatttgaggtcaggcaacatctctgctccctatctctagctgct
tctgagccccataggtttccaggacacagccctagacgaggctgaaggag
tagaaagggcaggaaaaaatacatgtgtgaactatagattctcatctttc
ctcatttagaagcccaccccatttgtccagaacctggacgcttgcattta
ttgaattctgaatgcacgaagccagcagaaaacacatggaaaacatcgtc
tcctttctttgcaggcaaccgcccacgctgtgacatcgagagac
gaattctctctctaatccacccagtgagaaagagcaaagcgtcaggtcca
catcactgtcataagagcatgagctgcctcttgcaggctggtgtccatca
cctgagatccatctatctctacacacctatagcaaagagcaagcaaacct
tgcatatatgacttcaacccagttaagtcatgcacaggtaaagaattagc
attcactagagtaatgagctttaagggattttttttttacacagttatag
tcatgtcaatgtatatatttatacacacacatagatacatacatacaaac
aaattcttgtttggggcactacttctagaattgtatgtatgaatacatcc
tttgagatggtacaattgtctataaagacagttttataaatatgtacttt
tttttatctttccaaaaaggcaataaaattctctccttatcacttttcca
agaaattattttttaaaaaaaataaaaaagagtggttatagagattactc
tgttgggaaagtacatgttctagaggcacaagaacctaaatttgaacctc
atgtaaaaagaccggctatgtttggttttcagttgcacatacttcctatt
tcttgtgaaaatgtttaacagatccattctttataaaagaaactaaactg
tatcagaaaataagttaattcaacttcattgttgaaaaccttcacccttc
gggtcagtgactgacacattctgagctgggaaatcacagcaaaaatgatc
caacacctgtatgaggacagaaagtcaacagtaagatcacttgtcaccaa
gcatctctgtgtgttctgcaaccacagaaactctagaaatggaacacacc
aaactgatgtgagactgagatatttcatggctggagatatccctgcctga
gattttggcatgcttcttaagttaaaggtcccagaaacatcctaaagtgt
gaaacatagcccagatagcattacttgtcagaaaaataatgtgggatttg
tataccaaaaagtagtgatcatagaacctcaaatttcttcttcctgatca
aacatggcaagctgtgccagctacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19225673_19226722
seq2: B6Ng01-133G15.b_45_1088

seq1  GAATTCCAGCAGGGGCGGGACACTGCAGAATGCATTTTAAGGGAGTCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGGGGCGGGACACTGCAGAATGCATTTTAAGGGAGTCGAG  50

seq1  TAAGGTATCTTGGCTTTGGGACCTATATTGTAATGGTATTGTCTTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATCTTGGCTTTGGGACCTATATTGTAATGGTATTGTCTTTACTG  100

seq1  GAAAAATGGATTCCATTTCCTTGGGCTCTTTGGGGACTGGATGTTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGATTCCATTTCCTTGGGCTCTTTGGGGACTGGATGTTTTAAT  150

seq1  GGGGGAAAGAAGTAGTTTTGCTGAGTGATTGGGGAAGACAGTCTATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAGAAGTAGTTTTGCTGAGTGATTGGGGAAGACAGTCTATAAAC  200

seq1  TACCATGACTCTGCTTTATGAATGAAACAGTTTTCCTTCTCAGACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGACTCTGCTTTATGAATGAAACAGTTTTCCTTCTCAGACACACA  250

seq1  GGTATTTTGGCATAAAATGGTACACACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTGGCATAAAATGGTACACACACACACACACACACACACACACA  300

seq1  CACACACACACACACCAGAAACACAAGGCAAAGGGAACGAGATTGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCAGAAACACAAGGCAAAGGGAACGAGATTGTATTT  350

seq1  CAACTTTGAATTCCTGTCTTGATTTATTGGGAATATTCCTAATGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGAATTCCTGTCTTGATTTATTGGGAATATTCCTAATGGATGAA  400

seq1  GTTCCATGAATTTAATGTATCTCTCTTCTCTTAGTCCAACTTTTTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGAATTTAATGTATCTCTCTTCTCTTAGTCCAACTTTTTACTGT  450

seq1  ACCCCATCTTAATATTACCACGAAGTAAAACCGGCACCTTTAGCAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCTTAATATTACCACGAAGTAAAACCGGCACCTTTAGCAAGTTC  500

seq1  AAGGAGTAGAGTATTTGATTGGTGCACACATTTAGTTTGGGTACACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAGAGTATTTGATTGGTGCACACATTTAGTTTGGGTACACTTAT  550

seq1  TTTTTTTCACCTACCTAGACGGGAACTTTATAAAATCCATTAGGATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACCTACCTAGACGGGAACTTTATAAAATCCATTAGGATATAT  600

seq1  GTTCAGATGTTTTCTGTGATTTACACAGTCCCTTCCCCCAGTAGTCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATGTTTTCTGTGATTTACACAGTCCCTTCCCCCAGTAGTCTGGA  650

seq1  CTCTCAGTATTCCTATCTTTTTCAATCCACTTTGAAGCAAGGGAAGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTATTCCTATCTTTTTCAATCCACTTTGAAGCAAGGGAAGGGGT  700

seq1  TGAAGTTTTAGGGACCCTCTGAGGGAATCGCTCAAAGGATGAAGGTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTTAGGGACCCTCTGAGGGAATCGCTCAAAGGATGAAGGTTGTA  750

seq1  AACAAAAA-TTGAGGTCAGGCAACATCTCTGCT-CCTATCTCTAGCTGCT  798
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AACAAAAATTTGAGGTCAGGCAACATCTCTGCTCCCTATCTCTAGCTGCT  800

seq1  TCTGAGCCCCATAGGTTTCCAGGACACAGCCCTAGACGAGGCTGAAAGGA  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGAGCCCCATAGGTTTCCAGGACACAGCCCTAGACGAGGCTG-AAGGA  849

seq1  GTAGAAAGGGCAGGAAAAAATACATGTGTGAACTATAGATTCTCATCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGGGCAGGAAAAAATACATGTGTGAACTATAGATTCTCATCTTT  899

seq1  CCTCAGTTTAGAAGCCCACCCCATTTGTCCAAGAACCTGGACGCTTGCAT  948
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCA-TTTAGAAGCCCACCCCATTTGTCC-AGAACCTGGACGCTTGCAT  947

seq1  TAGTTGAATTCTGATTGCACGAAGCCAGCAGAAAACACATTGAAAAACAT  998
      |  ||||||||||| |||||||||||||||||||||||| || |||||||
seq2  TTATTGAATTCTGAATGCACGAAGCCAGCAGAAAACACA-TGGAAAACAT  996

seq1  CGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACATCGAGAG  1048
      ||||||||||| ||||| |||||| || ||||||| ||||||||||||||
seq2  CGTCTCCTTTCTTTGCA-GGCAAC-CG-CCCACGC-TGTGACATCGAGAG  1042

seq1  AC  1050
      ||
seq2  AC  1044

seq1: chr1_19355836_19357321
seq2: B6Ng01-133G15.g_65_1135 (reverse)

seq1  GCTGGCACAGGCCCCTCTGAGTTGCTTTGGAATAGATGTTTCATTCCACT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACCAGTGATCCCAAGTTCCTGGGTATGCTAGGTCCCCTGCTGCATGGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGGGACTGTCTACTGATTTTGCGCCCAAGGTGGTGCGTGGCTGGCACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGTATTCTTGACCTCTATATTTTAATGAGGTCCCTTCCACATTTCCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAATAATCCTGCTTTCCATTATAATAGTCTTTCTGTATAGTTTCTACT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAATAGCAAAGGAGTTTCTACATGACTAGACCATCAAACTTCGCCAGGAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TATTAGTCACCCTTTGGGTAGGGTTTGGGTGAGATGTAAAGAAAGGAATT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTGAAAGTATAGCTTTTACAAGGTAGTGAGTGATCAAGCAACAACTA  400
                                                        
seq2  --------------------------------------------------  0

seq1  GGTAGCTGGCAACAGGCTTTGCCATGTTTTGATCAGGGAGAAGAAATTTG  450
          |||||| ||||   |||||||| |||||||||| ||||||||||||
seq2  ----GCTGGC-ACAG--CTTGCCATG-TTTGATCAGGAAGAAGAAATTTG  42

seq1  AGTTTCTATTGATCACTTACTTTTTTGGTTATACAAATCCCACATTATTT  500
      || ||||| ||||||| ||||||||  | |||||||||||||||||||||
seq2  AGGTTCTA-TGATCAC-TACTTTTT--GGTATACAAATCCCACATTATTT  88

seq1  TTCTGACAAGTAATGCTATCTGGGCTATGTTTCACACTTTTAGGATGTTT  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTGACAAGTAATGCTATCTGGGCTATGTTTCACAC-TTTAGGATGTTT  137

seq1  CTGGGGACCTTTAACTTAAGAAGCATGCCAAAATCTCAGGCAGGGATATT  600
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CT-GGGACCTTTAACTTAAGAAGCATGCCAAAATCTCAGGCAGGGATA-T  185

seq1  CTCCAGCCATGAAATATCTCAGTCTCACATCAGTTTGGTGTGTTCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATGAAATATCTCAGTCTCACATCAGTTTGGTGTGTTCCATTT  235

seq1  CTAGAGTTTCTGTGGTTGCAGAACACACAGAGATGCTTGGTGACAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTTCTGTGGTTGCAGAACACACAGAGATGCTTGGTGACAAGTGA  285

seq1  TCTTACTGTTGACTTTCTGTCCTCATACAGGTGTTGGATCATTTTTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGTTGACTTTCTGTCCTCATACAGGTGTTGGATCATTTTTGCTG  335

seq1  TGATTTCCCAGCTCAGAATGTGTCAGTCACTGACCCGAAGGGTGAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCAGCTCAGAATGTGTCAGTCACTGACCCGAAGGGTGAAGGTT  385

seq1  TTCAACAATGAAGTTGAATTAACTTATTTTCTGATACAGTTTAGTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATGAAGTTGAATTAACTTATTTTCTGATACAGTTTAGTTTCTT  435

seq1  TTATAAAGAATGGATCTGTTAAACATTTTCACAAGAAATAGGAAGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAATGGATCTGTTAAACATTTTCACAAGAAATAGGAAGTATGT  485

seq1  GCAACTGAAAACCAAACATAGCCGGTCTTTTTACATGAGGTTCAAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAAAACCAAACATAGCCGGTCTTTTTACATGAGGTTCAAATTTA  535

seq1  GGTTCTTGTGCCTCTAGAACATGTACTTTCCCAACAGAGTAATCTCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGTGCCTCTAGAACATGTACTTTCCCAACAGAGTAATCTCTATA  585

seq1  ACCACTCTTTTTTATTTTTTTTAAAAAATAATTTCTTGGAAAAGTGATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTTTTTTATTTTTTTTAAAAAATAATTTCTTGGAAAAGTGATAA  635

seq1  GGAGAGAATTTTATTGCCTTTTTGGAAAGATAAAAAAAAGTACATATTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATTTTATTGCCTTTTTGGAAAGATAAAAAAAAGTACATATTTA  685

seq1  TAAAACTGTCTTTATAGACAATTGTACCATCTCAAAGGATGTATTCATAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTCTTTATAGACAATTGTACCATCTCAAAGGATGTATTCATAC  735

seq1  ATACAATTCTAGAAGTAGTGCCCCAAACAAGAATTTGTTTGTATGTATGT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTCTAGAAGTAGTGCCCCAAACAAGAATTTGTTTGTATGTATGT  785

seq1  ATCTATGTGTGTGTATAAATATATACATTGACATGACTATAACTGTGTAA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTGTGTGTATAAATATATACATTGACATGACTATAACTGTGTAA  835

seq1  AAAAAAAATCCCTTAAAGCTCATTACTCTAGTGAATGCTAATTCTTTACC  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCCTTAAAGCTCATTACTCTAGTGAATGCTAATTCTTTACC  885

seq1  TGTGCATGACTTAACTGGGTTGAAGTCATATATGCAAGGTTTGCTTGCTC  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGACTTAACTGGGTTGAAGTCATATATGCAAGGTTTGCTTGCTC  935

seq1  TTTGCTATAGGTGTGTAGAGATAGATGGATCTCAGGTGATGGACACCAGC  1400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATAGGTGTGTAGAGATAGATGGATCTCAGGTGATGGACACCAGC  985

seq1  CTGCAAGAGGCAGCTCATGCTCTTATGACAGTGATGTGGACCTGACGCTT  1450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAGGCAGCTCATGCTCTTATGACAGTGATGTGGACCTGACGCTT  1035

seq1  TGCTCTTTCTCACTGGGTGGATTAGAGAGAGAATTC  1486
      ||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCTCACTGGGTGGATTAGAGAGAGAATTC  1071