BAC Information

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BAC

Clone NameB6Ng01-133H20
Chromosome1 (Build37)
Map Location 140,812,104 - 140,902,139
singlet/doubletdoublet
Overlap geneLOC100042623, Dennd1b
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H20.bB6Ng01-133H20.g
ACCDH934022DH934023
length1,1711,158
definitionDH934022|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H20, 5' end.DH934023|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,900,950 - 140,902,139)(140,812,104 - 140,813,263)
sequence
gaattcagaggatgttagatcccctgaaactgaagttataggtggttgtg
agccccttgatgtggatgctgggaactgaacctggctcttctgcaaaagt
agtgtgtgctctacaccacttagttatctctctaatcctataatttacta
caacagtatattccttccttacagacagaaaagatattttgaagttattt
caaggttaaatgcatttagataatttgtgcaagtgttccaacatgtttgg
ttaatgtgaatgaagtaaatctacatagcacaacagaaaacgcaaacctg
tagtaggagacagagcccatgccatttctcagggcaacaggtactatcta
ttctactcatatgaaatgtgaatacgacactgaaaaattaaattagaaag
aaaacattataatttgagatttttcactatctttcagttgtgtgtgtacc
tctgtgtgtgtgcgtgtccatgtgtctgtgtgtctgtgtgtctgtgtgtg
tgtgcgcacacatgagtacagggtgccctctaagttcagaagtgggtgcc
agctagcgcctggaactggagttcaggcactggtgagcaatatgggtgct
gagaactgattgctgcaggagatgaaggtctcagcagtcgagtcatctct
ccaaccatgagccttctttaggactaaagcgcagctggagaggctgccca
gcagggctttggctgctctttcagaagacctgaattcccaatacccacat
ggctactcggaaccatctacaactccagttccagcgatctgacaacctcc
tctggcctccttgagtaccagtgatgcacaaagtaaacatacacacatgc
agacaaaatactcaaacacaaaataaaaataaataaatctttcctccaaa
aataaattaatcaaaaaggaaccaatcacatacttgatttttttataatc
tgtctaatggcttttagaatcaagacagtgtgttctctatgtcatttgaa
tgttcttactaaatatggagaacacgtgtaattcttgctgatccagtata
ctttaaaatgaaatgaacagccatgatgcatatgctatatcccagcattg
taagatgatgcagagatgctgcaagtcaggtctaccagcttacacagaaa
ttccagtcagcaatagaataa
gaattcaattccgttttacacaactcatcacctttatttaaaaacatcag
ttccttcttcttattaactcatacataactacttgtcttccagtttgttg
aagcagtaagtcagacaacacttgccacagtaatgtctgtcaaagtggct
tcccgtgaaaactccagcaccacatttatcagaaggacacgctcaacaaa
ggcggctaacattctgttttcattccccttacagtatttcagcccagcca
aacttcttaaacttcttcctcttatgcttatttttgggagtgatgtaaga
tttctttttcttagcaccaacttgaagtctcaacacaagatgatgggtgg
actccttttgaacaaagtatggccatcttccagctgcttgtcagcaaaga
tcagcctctactgaggaggaggaatttctgccttatcctttacattttct
acagtatcctagggatcaacctcaatcatgatggtcttccccgtaagggt
cttcacaaacatgtgcgtcttgatggtttcacccccagatggagaatcag
aaaggcactcatcacgtttttatctggtaaaaggataaaaatgaaaagag
ggaggtagagagcaggatccctggttaagatcacttacttctcttgtaac
ccaggtccgattcccagcacccagtttgagccacacaaccatagataact
ccagttccggagactctaagggccattgcagtatctgggatactgcaagc
atgtgacacacacagatgcatgtgggcaaagcactcttacatacaataaa
aataaaggggtttttgttgttgttgttgttttatttttggtgggtttttt
ttccaaaatggaagaaatctggcctcataagtttaaaggaacttttgttg
taagacaatttatgaagcagatgactaattgttccagctaatctaacatg
gaatattcaaatctcaaagcagccccggaagctataggctgctcagctga
tgagctcacgtctgcagggaacactgcttctgttgatgctcagagcatta
actgcctcagtagcactgcctttgccattcaagaagtttgtgttacgggg
cctctgtaagaccaagagagtaaatggccaagtacactacgaaagtgaca
ctccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140900950_140902139
seq2: B6Ng01-133H20.b_49_1219 (reverse)

seq1  TTATTCTA-TGCTGACCTTGAATATTCTGTGT-AGCTGGGTTAGACCTGG  48
      |||||||| |||||| || |||| |||||||| ||||||  |||||||  
seq2  TTATTCTATTGCTGA-CTGGAAT-TTCTGTGTAAGCTGG--TAGACCT--  44

seq1  GACTTGCAGCAATCCTCCTGCATCAATCTTACAAATTGCTGGGATTATAG  98
      |||||||||| |||   ||||||| |||||||||  |||||||| |||| 
seq2  GACTTGCAGC-ATC--TCTGCATC-ATCTTACAA--TGCTGGGA-TATA-  86

seq1  GCATATGCATCATGCCTGTTCATTTCATTTTAAAGTATAACCTTGGAATC  148
      |||||||||||||| ||||||||||||||||||||||||  ||  | |||
seq2  GCATATGCATCATGGCTGTTCATTTCATTTTAAAGTATA--CT--GGATC  132

seq1  AGCAAGAATTACACGTGTTCTCCATATTTAGTAAAGAACATTCAAATGAA  198
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AGCAAGAATTACACGTGTTCTCCATATTTAGT-AAGAACATTCAAATG-A  180

seq1  CATAGAGAACACACTGTCTTGATTCTAAAAGCCATTAGAACAGATTATAA  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATAGAGAACACACTGTCTTGATTCTAAAAGCCATTAG-ACAGATTATAA  229

seq1  AAAAATCAAGTATGTGATTGGTTCCTTTTTGATTAATTTATTTTTGGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAGTATGTGATTGGTTCCTTTTTGATTAATTTATTTTTGGAGG  279

seq1  AAAGATTTATTTATTTTTATTTTGTGTTTGAGTATTTTGTCTGCATGTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTTTATTTTGTGTTTGAGTATTTTGTCTGCATGTGT  329

seq1  GTATGTTTACTTTGTGCATCACTGGTACTCAAGGAGGCCAGAGGAGGTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTACTTTGTGCATCACTGGTACTCAAGGAGGCCAGAGGAGGTTG  379

seq1  TCAGATCGCTGGAACTGGAGTTGTAGATGGTTCCGAGTAGCCATGTGGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCGCTGGAACTGGAGTTGTAGATGGTTCCGAGTAGCCATGTGGGT  429

seq1  ATTGGGAATTCAGGTCTTCTGAAAGAGCAGCCAAAGCCCTGCTGGGCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAATTCAGGTCTTCTGAAAGAGCAGCCAAAGCCCTGCTGGGCAGC  479

seq1  CTCTCCAGCTGCGCTTTAGTCCTAAAGAAGGCTCATGGTTGGAGAGATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCTGCGCTTTAGTCCTAAAGAAGGCTCATGGTTGGAGAGATGA  529

seq1  CTCGACTGCTGAGACCTTCATCTCCTGCAGCAATCAGTTCTCAGCACCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTGCTGAGACCTTCATCTCCTGCAGCAATCAGTTCTCAGCACCCA  579

seq1  TATTGCTCACCAGTGCCTGAACTCCAGTTCCAGGCGCTAGCTGGCACCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCACCAGTGCCTGAACTCCAGTTCCAGGCGCTAGCTGGCACCCA  629

seq1  CTTCTGAACTTAGAGGGCACCCTGTACTCATGTGTGCGCACACACACACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAACTTAGAGGGCACCCTGTACTCATGTGTGCGCACACACACACA  679

seq1  GACACACAGACACACAGACACATGGACACGCACACACACAGAGGTACACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGACACACAGACACATGGACACGCACACACACAGAGGTACACA  729

seq1  CACAACTGAAAGATAGTGAAAAATCTCAAATTATAATGTTTTCTTTCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGAAAGATAGTGAAAAATCTCAAATTATAATGTTTTCTTTCTAA  779

seq1  TTTAATTTTTCAGTGTCGTATTCACATTTCATATGAGTAGAATAGATAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTCAGTGTCGTATTCACATTTCATATGAGTAGAATAGATAGT  829

seq1  ACCTGTTGCCCTGAGAAATGGCATGGGCTCTGTCTCCTACTACAGGTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGCCCTGAGAAATGGCATGGGCTCTGTCTCCTACTACAGGTTTG  879

seq1  CGTTTTCTGTTGTGCTATGTAGATTTACTTCATTCACATTAACCAAACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTGTTGTGCTATGTAGATTTACTTCATTCACATTAACCAAACAT  929

seq1  GTTGGAACACTTGCACAAATTATCTAAATGCATTTAACCTTGAAATAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACACTTGCACAAATTATCTAAATGCATTTAACCTTGAAATAACT  979

seq1  TCAAAATATCTTTTCTGTCTGTAAGGAAGGAATATACTGTTGTAGTAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATCTTTTCTGTCTGTAAGGAAGGAATATACTGTTGTAGTAAAT  1029

seq1  TATAGGATTAGAGAGATAACTAAGTGGTGTAGAGCACACACTACTTTTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATTAGAGAGATAACTAAGTGGTGTAGAGCACACACTACTTTTGC  1079

seq1  AGAAGAGCCAGGTTCAGTTCCCAGCATCCACATCAAGGGGCTCACAACCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCCAGGTTCAGTTCCCAGCATCCACATCAAGGGGCTCACAACCA  1129

seq1  CCTATAACTTCAGTTTCAGGGGATCTAACATCCTCTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACTTCAGTTTCAGGGGATCTAACATCCTCTGAATTC  1171

seq1: chr1_140812104_140813263
seq2: B6Ng01-133H20.g_65_1222

seq1  GAATTCAATTCCGTTTTACACAACTCATCACCTTTATTTAAAAACATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCGTTTTACACAACTCATCACCTTTATTTAAAAACATCAG  50

seq1  TTCCTTCTTCTTATTAACTCATACATAACTACTTGTCTTCCAGTTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTCTTATTAACTCATACATAACTACTTGTCTTCCAGTTTGTTG  100

seq1  AAGCAGTAAGTCAGACAACACTTGCCACAGTAATGTCTGTCAAAGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAAGTCAGACAACACTTGCCACAGTAATGTCTGTCAAAGTGGCT  150

seq1  TCCCGTGAAAACTCCAGCACCACATTTATCAGAAGGACACGCTCAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGAAAACTCCAGCACCACATTTATCAGAAGGACACGCTCAACAAA  200

seq1  GGCGGCTAACATTCTGTTTTCATTCCCCTTACAGTATTTCAGCCCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTAACATTCTGTTTTCATTCCCCTTACAGTATTTCAGCCCAGCCA  250

seq1  AACTTCTTAAACTTCTTCCTCTTATGCTTATTTTTGGGAGTGATGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTAAACTTCTTCCTCTTATGCTTATTTTTGGGAGTGATGTAAGA  300

seq1  TTTCTTTTTCTTAGCACCAACTTGAAGTCTCAACACAAGATGATGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTAGCACCAACTTGAAGTCTCAACACAAGATGATGGGTGG  350

seq1  ACTCCTTTTGAACAAAGTATGGCCATCTTCCAGCTGCTTGTCAGCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTGAACAAAGTATGGCCATCTTCCAGCTGCTTGTCAGCAAAGA  400

seq1  TCAGCCTCTACTGAGGAGGAGGAATTTCTGCCTTATCCTTTACATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTACTGAGGAGGAGGAATTTCTGCCTTATCCTTTACATTTTCT  450

seq1  ACAGTATCCTAGGGATCAACCTCAATCATGATGGTCTTCCCCGTAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCCTAGGGATCAACCTCAATCATGATGGTCTTCCCCGTAAGGGT  500

seq1  CTTCACAAACATGTGCGTCTTGATGGTTTCACCCCCAGATGGAGAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAACATGTGCGTCTTGATGGTTTCACCCCCAGATGGAGAATCAG  550

seq1  AAAGGCACTCATCACGTTTTTATCTGGTAAAAGGATAAAAATGAAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTCATCACGTTTTTATCTGGTAAAAGGATAAAAATGAAAAGAG  600

seq1  GGAGGTAGAGAGCAGGATCCCTGGTTAAGATCACTTACTTCTCTTGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAGAGCAGGATCCCTGGTTAAGATCACTTACTTCTCTTGTAAC  650

seq1  CCAGGTCCGATTCCCAGCACCCAGTTTGAGCCACACAACCATAGATAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCGATTCCCAGCACCCAGTTTGAGCCACACAACCATAGATAACT  700

seq1  CCAGTTCCGGAGACTCTAAGGGCCATTGCAGTATCTGGGATACTGCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCGGAGACTCTAAGGGCCATTGCAGTATCTGGGATACTGCAAGC  750

seq1  ATGTGACACACACAGATGCATGTGGGCAAAGCACTCTTACATACAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACACACACAGATGCATGTGGGCAAAGCACTCTTACATACAATAAA  800

seq1  AAT-AAGGGGTTTTTGTTGTTGTTGTTGTTTTATTTTT-GTTGGTTTTTT  848
      ||| |||||||||||||||||||||||||||||||||| || ||||||||
seq2  AATAAAGGGGTTTTTGTTGTTGTTGTTGTTTTATTTTTGGTGGGTTTTTT  850

seq1  TTCCAAAATGGAAGAAATCTGGCCTCATAAGTTT-AAGGAAC-TTTGTTG  896
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TTCCAAAATGGAAGAAATCTGGCCTCATAAGTTTAAAGGAACTTTTGTTG  900

seq1  TAAGACAATTTATGAAGCAGGATGACTATTTTGTTTCAAGCTAATCTAAC  946
      ||||||||||||||||||| |||||||| ||   ||| ||||||||||||
seq2  TAAGACAATTTATGAAGCA-GATGACTAATT--GTTCCAGCTAATCTAAC  947

seq1  ATGGAATATTTCAAATCTCAAAGGCAGCCCCGGAAGCTATAGGCTTGCTC  996
      |||||||| ||||||||||||| ||||||||||||||||||||| |||||
seq2  ATGGAATA-TTCAAATCTCAAA-GCAGCCCCGGAAGCTATAGGC-TGCTC  994

seq1  AGCTGATGAGGCTCACGTCTGCAGGGAAACACTGCTTCTGTTGATGCTCA  1046
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AGCTGATGA-GCTCACGTCTGCAGGG-AACACTGCTTCTGTTGATGCTCA  1042

seq1  GTAGCATTAACTGCTTCAGTAGCACTGTCTTTGCCATCCAAGGTAGTTTG  1096
      | |||||||||||| |||||||||||| ||||||||| ||| | ||||||
seq2  G-AGCATTAACTGCCTCAGTAGCACTGCCTTTGCCATTCAA-GAAGTTTG  1090

seq1  TGTTACTGTGGCTCTGTAAGATCAAGA-AGTAAAT-GCCAAGTA-ACAAC  1143
      |||||| | | |||||||||| ||||| ||||||| |||||||| || ||
seq2  TGTTACGGGGCCTCTGTAAGACCAAGAGAGTAAATGGCCAAGTACACTAC  1140

seq1  AGAAGTGACA-TCCTTGG  1160
        |||||||| |||||||
seq2  GAAAGTGACACTCCTTGG  1158