BAC Information

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BAC

Clone NameB6Ng01-133N02
Chromosome1 (Build37)
Map Location 152,844,480 - 152,972,982
singlet/doubletdoublet
Overlap genenone
Upstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
Downstream geneLOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N02.bB6Ng01-133N02.g
ACCDH934270DH934271
length1,1841,110
definitionDH934270|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N02, 5' end.DH934271|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,844,480 - 152,845,682)(152,971,857 - 152,972,982)
sequence
gaattcttccaagatagtaaactaggaaaactaccaatgttttcaactct
atggaactgctttctttttttctgagaataaaataaaatagttatcataa
tatatttagcccagtatctagcaattactctacattcaaattttaatttt
attagcattacatttaaataacttgagggtttaaatctatgtgcattttc
agcaagaatacaaggcataaaacgtgatagaaaactaaagaggctgttta
tttgtttatagaatgtctttggtagctgctactttggatattgactgcct
ctcagtggctttgtcctcagcatataaagcatttgcagatgacagaattg
agaagtgaagaaaacaggaaatgatagctactggaaggaagttaggtcag
gaaacatttgtccttgatctgggaacctcagcctcttcctgtatttttta
ctcccctgctctcataagataggtggtgtcctctgcccagtactctgatg
ctgtgccttcccagaggtctgaaaaacacactaaaacagtggttctcaac
cttcctaatgcttagactttttaatgcagttcctcatgtcacagtgaccc
ccaaccataaaattatttttcttgctacttcataattataattttttcta
caagtatacatcataatgtaaatatctgcattttctgatggccttaggtg
acccatgtgaaagggtcatttgaccaccaaagggggtctcaacccatagg
ttgagaatcactgcaatagaccatttgaacatgagctgaaacctgcaaaa
ctggcccaagataagccttccctgctcataagtttactctctcgtgcctt
ttgttagaatggttgaaagctaatgagcacacagcttccctaccaccctg
aaacaagtgggtggtaacacttgagactgtgttgaatgtctgtaggacac
ttctgttagaaagaggatacatgaaaagaacatgcagttattaagagaca
ttttctttacataggcattttgtagagactctacatgcatgcacttatat
tgtgtcatgtgttcttctctacttgcccttctgcattgatgatcgtgcct
tggaaagaagaaaaggacccatgactcctctcatctttcatagtctgatt
actctggaatcaagtgtgccaaacaggcagccca
gaattccatgtaggcttcaggatgacctcagtgaccaggacatgggtgtg
tctttaagctttggagctcaacttacattaaatctcactgtgccaaactc
cagcctcacttgcttgcccactttggtcatcccactacggatacactgat
aatttgtcccaacagactaaccttctcttcatccatgcacatattctgtg
tgcatctagggcatgaaacctgcaactcaggttacccttatctaaaagct
tgacttcgatttcaaagcctcatttatcaaaaatttagtaaaactagggt
tttcctatatctaagttacggtgtctcaggtgagtcacggtattagctgg
ggagcccgtatttcttctagagttgtccaatcaggatgtcccacatctct
tgaccttcagagtcattttgaagaaccgttctcactcattctacctccca
ggtctttatttccatggaacatgttctttcaattctaatgagctaaattt
ttaaagtgaaaaagccagaatgtgactagttttgtattttctttttgttg
ctacatattttccctaaggcaaggcacaaaagaaccagcctagcaagctg
acggcaggaaacggtgaagctgtgggtgtgggaaggaacatacgtgaaag
ttcttcagttaacattcagtctgtgcctatttaaagacaagtcctcctca
ttttctctggtctggcctttctaacttgctttgtgtaaaccagtggttct
catcttgtgggttgtgacccctttgggggttacatataagctatctacgt
tatgattcataacaatagcaaaaaaagaacagtttaaagaagcaatcaaa
ataattttatgtttgtgggtcaccacaaccagaagaaatgtattaaagag
tcatagcattaggaagttgagaaccactggtttaaatcctgcttcttcca
gtactaactcatgtttcctactataaatcacgtaatttatgctgcatcct
ttaatgtaagtggctacatctctatagcatagaaatagcgtgagaatccc
tgaagaacttgtttagctcaagtctcagatagtttttctttactgtggca
aaatacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152844480_152845682
seq2: B6Ng01-133N02.b_48_1231

seq1  GAATTCTTCCAAGATAGTAAACTAGGAAAACTACCAATGTTTTCAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAGATAGTAAACTAGGAAAACTACCAATGTTTTCAACTCT  50

seq1  ATGGAACTGCTTTCTTTTTTTCTGAGAATAAAATAAAATAGTTATCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTGCTTTCTTTTTTTCTGAGAATAAAATAAAATAGTTATCATAA  100

seq1  TATATTTAGCCCAGTATCTAGCAATTACTCTACATTCAAATTTTAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAGCCCAGTATCTAGCAATTACTCTACATTCAAATTTTAATTTT  150

seq1  ATTAGCATTACATTTAAATAACTTGAGGGTTTAAATCTATGTGCATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTACATTTAAATAACTTGAGGGTTTAAATCTATGTGCATTTTC  200

seq1  AGCAAGAATACAAGGCATAAAACGTGATAGAAAACTAAAGAGGCTGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAATACAAGGCATAAAACGTGATAGAAAACTAAAGAGGCTGTTTA  250

seq1  TTTGTTTATAGAATGTCTTTGGTAGCTGCTACTTTGGATATTGACTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATAGAATGTCTTTGGTAGCTGCTACTTTGGATATTGACTGCCT  300

seq1  CTCAGTGGCTTTGTCCTCAGCATATAAAGCATTTGCAGATGACAGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCTTTGTCCTCAGCATATAAAGCATTTGCAGATGACAGAATTG  350

seq1  AGAAGTGAAGAAAACAGGAAATGATAGCTACTGGAAGGAAGTTAGGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAAGAAAACAGGAAATGATAGCTACTGGAAGGAAGTTAGGTCAG  400

seq1  GAAACATTTGTCCTTGATCTGGGAACCTCAGCCTCTTCCTGTATTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTGTCCTTGATCTGGGAACCTCAGCCTCTTCCTGTATTTTTTA  450

seq1  CTCCCCTGCTCTCATAAGATAGGTGGTGTCCTCTGCCCAGTACTCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGCTCTCATAAGATAGGTGGTGTCCTCTGCCCAGTACTCTGATG  500

seq1  CTGTGCCTTCCCAGAGGTCTGAAAAACACACTAAAACAGTGGTTCTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTCCCAGAGGTCTGAAAAACACACTAAAACAGTGGTTCTCAAC  550

seq1  CTTCCTAATGCTTAGACTTTTTAATGCAGTTCCTCATGTCACAGTGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATGCTTAGACTTTTTAATGCAGTTCCTCATGTCACAGTGACCC  600

seq1  CCAACCATAAAATTATTTTTCTTGCTACTTCATAATTATAATTTTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATAAAATTATTTTTCTTGCTACTTCATAATTATAATTTTTTCTA  650

seq1  CAAGTATACATCATAATGTAAATATCTGCATTTTCTGATGGCCTTAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATACATCATAATGTAAATATCTGCATTTTCTGATGGCCTTAGGTG  700

seq1  ACCCATGTGAAAGGGTCATTTGACCACCAAAGGGGGTCTCAACCCATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTGAAAGGGTCATTTGACCACCAAAGGGGGTCTCAACCCATAGG  750

seq1  TTGAGAATCACTGCAATAGACCATTTGAACATGAGCTGAAACCTGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATCACTGCAATAGACCATTTGAACATGAGCTGAAACCTGCAAAA  800

seq1  CTGGCCCAAGATAAGCCTTCCCTGCTCATAAGTTTACTCTCTCGTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAAGATAAGCCTTCCCTGCTCATAAGTTTACTCTCTCGTGCCTT  850

seq1  TTGTTAGAATGGTTGAAAGCTAATGAGCACACAGCTTCCCTACCACCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAATGGTTGAAAGCTAATGAGCACACAGCTTCCCTACCACCCTG  900

seq1  AAACAAGTGGGTGGTAACACTTGAGACTGTGTTGAATGTCTGTAGGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGGGTGGTAACACTTGAGACTGTGTTGAATGTCTGTAGGACAC  950

seq1  TTCTGTTAGAAAAGAGGATAACATGAAAAAGAACATGCAGTTATTAAGAG  1000
      ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
seq2  TTCTGTTAG-AAAGAGGAT-ACATG-AAAAGAACATGCAGTTATTAAGAG  997

seq1  ACATTTTTCTTTACATAGGCATTTTTGTAGAGACCTTCTACATGCATGCA  1050
      ||| ||||||||||||||||| ||||||||||||  ||||||||||||||
seq2  ACA-TTTTCTTTACATAGGCA-TTTTGTAGAGAC--TCTACATGCATGCA  1043

seq1  CCTTATA-TGTGTCCAATGTGT--CTCTCTACTTTGCCCTTCTGCATTTG  1097
       |||||| ||||||  ||||||   ||||||| ||||||||||||| |||
seq2  -CTTATATTGTGTC--ATGTGTTCTTCTCTAC-TTGCCCTTCTGCA-TTG  1088

seq1  ATGATCCGTGCCTTGGACAG-AGAAAAGGACCCCATGGTCTCTCTCATTC  1146
      ||||| ||||||||||| || ||||||||| ||||||    |||||||  
seq2  ATGAT-CGTGCCTTGGAAAGAAGAAAAGGA-CCCATGACTCCTCTCAT--  1134

seq1  CTTTCAATAAAGTCTGATTACTCTTGAAATCCAAGTGTGCACAAACAAGC  1196
      |||||   | |||||||||||||| |||   ||||||||| ||||| || 
seq2  CTTTC---ATAGTCTGATTACTCTGGAA--TCAAGTGTGC-CAAAC-AGG  1177

seq1  CAGCCCA  1203
      |||||||
seq2  CAGCCCA  1184

seq1: chr1_152971857_152972982
seq2: B6Ng01-133N02.g_67_1176 (reverse)

seq1  CTTTGGTATTTTGCCACAGTAAAGAAAAACATACTGGGAGAACTTTGAGG  50
      |||| |||||||||||||||||||||||||   ||| ||     |||| |
seq2  CTTT-GTATTTTGCCACAGTAAAGAAAAACTATCTGAGA----CTTGA-G  44

seq1  CTAAACAAATTTCTATCAGGGATTCCTCCAACGCTTATTTCTATGCTATA  100
      |||||| || |||| ||||||||| |||  |||| |||||||||||||||
seq2  CTAAAC-AAGTTCT-TCAGGGATT-CTC--ACGC-TATTTCTATGCTATA  88

seq1  GAGATTGTAAGCCACTTACCATTAAAGGATGCAGCATAAATTACGTGATT  150
      |||| ||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GAGA-TGT-AGCCACTTA-CATTAAAGGATGCAGCATAAATTACGTGATT  135

seq1  TATAGTAGGAAACATGAGTTAGTACTGGAAGAAGCAGGATTTAAACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGGAAACATGAGTTAGTACTGGAAGAAGCAGGATTTAAACCAGT  185

seq1  GGTTCTCAACCTTCCTAATGCTATGACTCTTTAATACATTTCTTCTGGTT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAA-CTTCCTAATGCTATGACTCTTTAATACATTTCTTCTGGTT  234

seq1  GTGGTGACCCACAAACATAAAATTATTTTGATTGCTTCTTTAAACTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACCCACAAACATAAAATTATTTTGATTGCTTCTTTAAACTGTTC  284

seq1  TTTTTTTGCTATTGTTATGAATCATAACGTAGATAGCTTATATGTAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTATTGTTATGAATCATAACGTAGATAGCTTATATGTAACCC  334

seq1  CCAAAGGGGTCACAACCCACAAGATGAGAACCACTGGTTTACACAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGGTCACAACCCACAAGATGAGAACCACTGGTTTACACAAAGCA  384

seq1  AGTTAGAAAGGCCAGACCAGAGAAAATGAGGAGGACTTGTCTTTAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAGGCCAGACCAGAGAAAATGAGGAGGACTTGTCTTTAAATAG  434

seq1  GCACAGACTGAATGTTAACTGAAGAACTTTCACGTATGTTCCTTCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTGAATGTTAACTGAAGAACTTTCACGTATGTTCCTTCCCACA  484

seq1  CCCACAGCTTCACCGTTTCCTGCCGTCAGCTTGCTAGGCTGGTTCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTTCACCGTTTCCTGCCGTCAGCTTGCTAGGCTGGTTCTTTTG  534

seq1  TGCCTTGCCTTAGGGAAAATATGTAGCAACAAAAAGAAAATACAAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCTTAGGGAAAATATGTAGCAACAAAAAGAAAATACAAAACTA  584

seq1  GTCACATTCTGGCTTTTTCACTTTAAAAATTTAGCTCATTAGAATTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCTGGCTTTTTCACTTTAAAAATTTAGCTCATTAGAATTGAAA  634

seq1  GAACATGTTCCATGGAAATAAAGACCTGGGAGGTAGAATGAGTGAGAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTTCCATGGAAATAAAGACCTGGGAGGTAGAATGAGTGAGAACG  684

seq1  GTTCTTCAAAATGACTCTGAAGGTCAAGAGATGTGGGACATCCTGATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAAAATGACTCTGAAGGTCAAGAGATGTGGGACATCCTGATTGG  734

seq1  ACAACTCTAGAAGAAATACGGGCTCCCCAGCTAATACCGTGACTCACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTAGAAGAAATACGGGCTCCCCAGCTAATACCGTGACTCACCTG  784

seq1  AGACACCGTAACTTAGATATAGGAAAACCCTAGTTTTACTAAATTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTAACTTAGATATAGGAAAACCCTAGTTTTACTAAATTTTTGA  834

seq1  TAAATGAGGCTTTGAAATCGAAGTCAAGCTTTTAGATAAGGGTAACCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGGCTTTGAAATCGAAGTCAAGCTTTTAGATAAGGGTAACCTGA  884

seq1  GTTGCAGGTTTCATGCCCTAGATGCACACAGAATATGTGCATGGATGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGTTTCATGCCCTAGATGCACACAGAATATGTGCATGGATGAAG  934

seq1  AGAAGGTTAGTCTGTTGGGACAAATTATCAGTGTATCCGTAGTGGGATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTAGTCTGTTGGGACAAATTATCAGTGTATCCGTAGTGGGATGA  984

seq1  CCAAAGTGGGCAAGCAAGTGAGGCTGGAGTTTGGCACAGTGAGATTTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGGGCAAGCAAGTGAGGCTGGAGTTTGGCACAGTGAGATTTAAT  1034

seq1  GTAAGTTGAGCTCCAAAGCTTAAAGACACACCCATGTCCTGGTCACTGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGAGCTCCAAAGCTTAAAGACACACCCATGTCCTGGTCACTGAG  1084

seq1  GTCATCCTGAAGCCTACATGGAATTC  1126
      ||||||||||||||||||||||||||
seq2  GTCATCCTGAAGCCTACATGGAATTC  1110