BAC Information

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BAC

Clone NameB6Ng01-133O23
Chromosome1 (Build37)
Map Location 15,847,276 - 15,848,399
singlet/doubletsinglet
Overlap geneGm106
Upstream geneEG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1
Downstream geneLOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O23.bB6Ng01-133O23.g
ACCDH934357DH934358
length1,1921,117
definitionDH934357|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O23, 5' end.DH934358|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgcacttctctggctatgaaataa
gtttcttgatcagaaacaatactgtgtggaataccatgatgatggatacg
gcattctataagtccatggatggtggttttggcagaagaattatgcgaag
taaaggcaagtccataaccagaataagtatctactccagtaagaacaaaa
tgttgtcctttccacagaggaaatggtctgatgtagttaacctgccacta
ggttgctggctggtcacctcaggaaatggtgctatatctgggtctcagtc
ttggtctctgctgttagcagagctggcattcagcaggtcagccttggtga
gtggaagtctgtgttgttgagtccaagcataagacagtaaaccaggtcct
agacttcccttcttcagtcagccgatcatagggaacacctcatgaggcta
taggcgcatgcttggcagcagatggcattgtaacaggagtagaaaccttc
tacttgcatttgagcaacttcttcatgtaacttgcttgtgccttccagac
ctgcttgggcccgatcatatatataccactttcatttgataatagactgc
tgctgtgcacatcctactttatggcttggagggtctgataacaccatctc
atgatgggcagttcaggtcgcatggtaatttggtgtcctattgtcaaatg
ttcagtttccacaaaggcacaatagcaggccaagaactggttttcaaagg
gagaatagttgtctgcagatgatggtagagctttgctccaaaatcccaaa
ggtctcttctgtgattcacctacaggggcctgccagaggctccaaacagc
atctctatctgccactgaaacctcaagtaccatcggtctgctggatcata
tggtccaattggtagagcagcctgcacctgttgaagagccttcaacgaga
aagccagtagctttctcagtcacttgtaatagacccacaaacattgtgct
tcttcttgtagtgggaggggcagtgcataattcatcttttcatctttaga
gatttctctggcatgcctcacctactagacttctaggatcactgagggat
gtcttaagttagtgattattccatctctgaaccaacattggtacaagagc
tctcaggtgctcatcttcgctcacattggtgcactaggacta
gaattccttacccactttattgctcacatggtgagctcaatagagacggc
tagccacaagtgactaataaacatgaaccaaattattaaatattaaaaca
tgatgggaataatgactaattggacaggtcagtcttttacttgtaatctg
tttttaccattacatctgacatgatggaaacctttatgtgtgtgtggcta
aattggttcttgtcgagctgttccagggattccttctagctgtagatggt
attaggtctaaccaaaagtgagcgagtgcagggccgggagaggcttgcag
ggagacacaatggcagcaactctgctctcaagtcactggggtgtgactcg
cctgagcaggactggcacagtgtggcctctaacttacccacccctccttc
tgaatggacttgggagttaaggatgaatggtaggtctctaaaaaaacaag
attttattgttttattatgtaatatgtgtgtgggtctgtctgctcaggaa
cccaaagagccagtagcagttgtgagtcacccaacctgggtgctgagaag
tgatcctgggtcctctgcaaaagcagcatacagtcttaactgctgagcca
gctcgctggccccaacttctatgttcttaagaatcagaagaaggcaggta
tagagcctatttttataatcccaatattatatgagtctgactctggaggt
ttgccatgagttcaagggtaccctgacctacatagtaagttccaggttat
ccttggatagagtgggacattgtatcaaacaacaacaaagagttaaagaa
aaatcaaaagaacaatatttcatgacacatgaaagtcatctgtctagtta
tagttttactgctgtgaagagacaccatgaccaaggcaactcttttaagg
acacatttaattgtggctggcttataaaggttcagaggtgagtccagtat
catcaaggtaggactatggcagcattcaggcagacatggcgcaggagtta
agaagttcttgcatctttattttgaagctgctagaaaaagactggcttca
aggcagctaggaatagggtcttaagcccccaccacaacgtgaccactact
caaacagtcaccttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15847276_15848399
seq2: B6Ng01-133O23.g_67_1183

seq1  GAATTCCTTACCCACTTTATTGCTCACATGGTGAGCTCAATAGAGACGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCCACTTTATTGCTCACATGGTGAGCTCAATAGAGACGGC  50

seq1  TAGCCACAAGTGACTAATAAACATGAACCAAATTATTAAATATTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACAAGTGACTAATAAACATGAACCAAATTATTAAATATTAAAACA  100

seq1  TGATGGGAATAATGACTAATTGGACAGGTCAGTCTTTTACTTGTAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAATAATGACTAATTGGACAGGTCAGTCTTTTACTTGTAATCTG  150

seq1  TTTTTACCATTACATCTGACATGATGGAAACCTTTATGTGTGTGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCATTACATCTGACATGATGGAAACCTTTATGTGTGTGTGGCTA  200

seq1  AATTGGTTCTTGTCGAGCTGTTCCAGGGATTCCTTCTAGCTGTAGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCTTGTCGAGCTGTTCCAGGGATTCCTTCTAGCTGTAGATGGT  250

seq1  ATTAGGTCTAACCAAAAGTGAGCGAGTGCAGGGCCGGGAGAGGCTTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCTAACCAAAAGTGAGCGAGTGCAGGGCCGGGAGAGGCTTGCAG  300

seq1  GGAGACACAATGGCAGCAACTCTGCTCTCAAGTCACTGGGGTGTGACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACAATGGCAGCAACTCTGCTCTCAAGTCACTGGGGTGTGACTCG  350

seq1  CCTGAGCAGGACTGGCACAGTGTGGCCTCTAACTTACCCACCCCTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAGGACTGGCACAGTGTGGCCTCTAACTTACCCACCCCTCCTTC  400

seq1  TGAATGGACTTGGGAGTTAAGGATGAATGGTAGGTCTCTAAAAAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGACTTGGGAGTTAAGGATGAATGGTAGGTCTCTAAAAAAACAAG  450

seq1  ATTTTATTGTTTTATTATGTAATATGTGTGTGGGTCTGTCTGCTCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTTTTATTATGTAATATGTGTGTGGGTCTGTCTGCTCAGGAA  500

seq1  CCCAAAGAGCCAGTAGCAGTTGTGAGTCACCCAACCTGGGTGCTGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGCCAGTAGCAGTTGTGAGTCACCCAACCTGGGTGCTGAGAAG  550

seq1  TGATCCTGGGTCCTCTGCAAAAGCAGCATACAGTCTTAACTGCTGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGGGTCCTCTGCAAAAGCAGCATACAGTCTTAACTGCTGAGCCA  600

seq1  GCTCGCTGGCCCCAACTTCTATGTTCTTAAGAATCAGAAGAAGGCAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTGGCCCCAACTTCTATGTTCTTAAGAATCAGAAGAAGGCAGGTA  650

seq1  TAGAGCCTATTTTTATAATCCCAATATTATATGAGTCTGACTCTGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTATTTTTATAATCCCAATATTATATGAGTCTGACTCTGGAGGT  700

seq1  TTGCCATGAGTTCAAGGGTACCCTGACCTACATAGTAAGTTCCAGGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGAGTTCAAGGGTACCCTGACCTACATAGTAAGTTCCAGGTTAT  750

seq1  CCTTGGATAGAGTGGGACATTGTATCAAACAACAACAAAGAGTTAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATAGAGTGGGACATTGTATCAAACAACAACAAAGAGTTAAAGAA  800

seq1  AAATCAAAAGAACAATATTTCATGACACATGAAAGTCATCTGTCTAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAGAACAATATTTCATGACACATGAAAGTCATCTGTCTAGTTA  850

seq1  TAGTTTTACTGCTGTGAAGAGACACCATGACCAAGGCAACTCTTTTAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTACTGCTGTGAAGAGACACCATGACCAAGGCAACTCTTTTAAGG  900

seq1  ACAACATTTAATTGTGGCTGGCTTATTAAAGGTTCAGAGGTTGAGTCCAG  950
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AC-ACATTTAATTGTGGCTGGCTTA-TAAAGGTTCAGAGG-TGAGTCCAG  947

seq1  TATCATCAAGGTAGGACTATGGCAGCATCCAGGCAGACATGGCGCAGGAG  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATCATCAAGGTAGGACTATGGCAGCATTCAGGCAGACATGGCGCAGGAG  997

seq1  TTAAG-AGTTC-TGCATCTTTATCTGAAGGCTGCTAGAAAAAGACTGGCT  1048
      ||||| ||||| ||||||||||| |  | |||||||||||||||||||| 
seq2  TTAAGAAGTTCTTGCATCTTTATTTTGAAGCTGCTAGAAAAAGACTGGC-  1046

seq1  TTCAGGGCAGCTAGGATAAGGGTCTTAAAGCCCCCA-CACACAGTGACAC  1097
      |||| |||||||||||  |||||||| ||||||||| ||||  ||||| |
seq2  TTCAAGGCAGCTAGGAATAGGGTCTT-AAGCCCCCACCACAACGTGAC-C  1094

seq1  ACCTACTCCAACACGTCACACCTTCTA  1124
      | |||||| |||| ||  |||||||||
seq2  A-CTACTCAAACA-GT--CACCTTCTA  1117