BAC Information

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BAC

Clone NameB6Ng01-134D21
Chromosome1 (Build37)
Map Location 28,544,406 - 28,674,498
singlet/doubletdoublet
Overlap geneEG665903
Upstream geneLOC100040952, EG433281
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134D21.bB6Ng01-134D21.g
ACCDH934590DH934591
length1,1371,106
definitionDH934590|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D21, 5' end.DH934591|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,673,351 - 28,674,498)(28,544,406 - 28,545,364)
sequence
gaattctcaattattattacatagttacaaatgagatgagaaaaagagta
caaaatagaatatgttgaaaagaaaattatacaagaaagaatactcttta
actgacacatgaaggacaagtccaatttgaataaattgtaaaaggtttta
tcattgtatcaaaatgctacatcattattcccttttaatatctcaaaatc
taaacatctggtacacacaaacacacaccacacacacacacacacacata
cacacatacaaacacacactcccacacttttgggcttcaaaaaacttacg
tgatctacttgtgcttaataaaagcacaaatactataaacactgaaaagt
aaatatttatcccttttccagtgggaaattcataaaatggtatataaaat
tctacatatgtgcattctgaccaaatctctgctatgcccactctgttctg
aaatgttttactattttgattctgcctcaagagtagctgggattatagag
ttccatttgtagctcatgttttcaagttttaataaaatatttccaaatgg
ttgctttcaggaaatcagaaactaaaaacttttcttttttcacctttaaa
aatactactaatgggatgggaagttttgtttactaaacaatcagaaaggt
ttgtcactaagtgttatggttacctatgactggaatgtaagcttgacatt
cagtgggacaaatattcaatgacagtctaaaagagaagtcttgaaagaat
cccatcatgtcagtggcacgaggtcaagccacccaatgatgacagtagaa
atctggccaaagattagtctacagcaactcacatatggggtctcaatatc
ttagtcttttttttccattttttattaggtatttagctcatttacatttc
caatgctataccaaaagtcctccataccaccttccccactccctacccac
ccactcccctttttggccctggcgttcactgtactggggcataataaagt
ttgcagtccatggcctctctttgcagtgatggccgactagcatcttttga
taaatatgcagctagagacaagagctcctgggtactgttagtcatattgg
ttgttcaacctataggtgcagttccctttagcctcct
gaattccacacccctaatccccttaccccataaaaactcctagttttcga
gcctcgtggctgacatccattatctcctgtgtgggatgcatgtcagtccg
gagctctgtcatttaacgacctcatgtaattacatctagatggtccttca
tgattttctgggtgcacgctgaatcgggaattgagttggggtttccccac
taggttctatcagtggaggacactagaagaacaagacctgttttatctat
taaacagagctcttatgggctcacagagcccaaaattataagcacaggaa
ctacaaggccctgtaccatgtcctctttgtatactttgtcactaacatgc
ttggtggttttgtggaactctcaagagtgggatcaagtgtgtctctgaca
cctttgcttgctcttgggactctttcttctactggattggtttttctttt
tcagccttgacatgagagcatttctttttcttactgtatcttcttttgct
gtgcttggttgttgtctcttggaggcttcctttttcctgaaggaaaacag
agagggaatgaagggaagaagaaaggtgaagatattgggaggattggaga
aagtggaaactgtccacggtgtattgtatgagaaaagaatctattttcaa
tatgaatgaattaatagattataagaatctgtgtatctggtcagctgtgg
ctgtggaagcagcccttataagctcgagagagcagcaccactgaagctaa
gcaacttgtgctcattctgagaatctagcaattatgaaggtgccaccaaa
gaaagaagcccttccaaacacagctgggctgatttgcatgaatcagaggt
catggcagcatacacacagagtcccagggctgagagtagagtggactcag
accctactgctaacccagagctactctgaccaataacccacatgcaaatg
aaacttagtattcactaaaagagtcactggatatgcaaaccactctaggt
ctctgtgtctcatgtgtcagatcacaaacacaaatgaacttaattggttt
cttgtttatttgactttaatgctttctctgggctttccttcttttcgttt
ttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28673351_28674498
seq2: B6Ng01-134D21.b_41_1177 (reverse)

seq1  AGGA-GCTAAAGGGAACTGCAACCCTATAGGTGGAACAA-CAATATGAAC  48
      |||| ||||||||||||||||  ||||||||| |||||| ||||||| ||
seq2  AGGAGGCTAAAGGGAACTGCA--CCTATAGGTTGAACAACCAATATG-AC  47

seq1  TAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGAT  98
      ||| |||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TAA-CAGTACCCAGGAGCTCTTGTCTCTAGCTGCATATTTATCAAAAGAT  96

seq1  GGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTT  148
      |  |||||||||||||||||||||||||||||   ||||| |||||||||
seq2  G--CTAGTCGGCCATCACTGCAAAGAGAGGCC--ATGGAC-TGCAAACTT  141

seq1  TA-TATGCCCCAGTACAGGTGAACGCCAGGGCCAAAAAGGGGGAGTGGGT  197
      || |||||||||||||| |||||||||||||||||||| |||||||||||
seq2  TATTATGCCCCAGTACA-GTGAACGCCAGGGCCAAAAA-GGGGAGTGGGT  189

seq1  GGGTAGGGGAGTGGGGGAAGGTGGGTATGGAGGACTTTTGGTATAGCATT  247
      ||||| |||||| ||||||||| |||||||||||||||||||||||||||
seq2  GGGTA-GGGAGT-GGGGAAGGT-GGTATGGAGGACTTTTGGTATAGCATT  236

seq1  GGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGACTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGACTA  286

seq1  AGATATTGAGACCCCATATGTGAGTTGCTGTAGACTAATCTTTGGCCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGAGACCCCATATGTGAGTTGCTGTAGACTAATCTTTGGCCAGA  336

seq1  TTTCTACTGTCATCATTGGGTGGCTTGACCTCGTGCCACTGACATGATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTCATCATTGGGTGGCTTGACCTCGTGCCACTGACATGATGG  386

seq1  GATTCTTTCAAGACTTCTCTTTTAGACTGTCATTGAATATTTGTCCCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCAAGACTTCTCTTTTAGACTGTCATTGAATATTTGTCCCACT  436

seq1  GAATGTCAAGCTTACATTCCAGTCATAGGTAACCATAACACTTAGTGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCAAGCTTACATTCCAGTCATAGGTAACCATAACACTTAGTGACA  486

seq1  AACCTTTCTGATTGTTTAGTAAACAAAACTTCCCATCCCATTAGTAGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCTGATTGTTTAGTAAACAAAACTTCCCATCCCATTAGTAGTAT  536

seq1  TTTTAAAGGTGAAAAAAGAAAAGTTTTTAGTTTCTGATTTCCTGAAAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGTGAAAAAAGAAAAGTTTTTAGTTTCTGATTTCCTGAAAGCA  586

seq1  ACCATTTGGAAATATTTTATTAAAACTTGAAAACATGAGCTACAAATGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGGAAATATTTTATTAAAACTTGAAAACATGAGCTACAAATGGA  636

seq1  ACTCTATAATCCCAGCTACTCTTGAGGCAGAATCAAAATAGTAAAACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAATCCCAGCTACTCTTGAGGCAGAATCAAAATAGTAAAACATT  686

seq1  TCAGAACAGAGTGGGCATAGCAGAGATTTGGTCAGAATGCACATATGTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGAGTGGGCATAGCAGAGATTTGGTCAGAATGCACATATGTAG  736

seq1  AATTTTATATACCATTTTATGAATTTCCCACTGGAAAAGGGATAAATATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATACCATTTTATGAATTTCCCACTGGAAAAGGGATAAATATT  786

seq1  TACTTTTCAGTGTTTATAGTATTTGTGCTTTTATTAAGCACAAGTAGATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAGTGTTTATAGTATTTGTGCTTTTATTAAGCACAAGTAGATC  836

seq1  ACGTAAGTTTTTTGAAGCCCAAAAGTGTGGGAGTGTGTGTTTGTATGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGTTTTTTGAAGCCCAAAAGTGTGGGAGTGTGTGTTTGTATGTGT  886

seq1  GTATGTGTGTGTGTGTGTGTGTGGTGTGTGTTTGTGTGTACCAGATGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTGTGTGTGTGTGGTGTGTGTTTGTGTGTACCAGATGTTT  936

seq1  AGATTTTGAGATATTAAAAGGGAATAATGATGTAGCATTTTGATACAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAGATATTAAAAGGGAATAATGATGTAGCATTTTGATACAATG  986

seq1  ATAAAACCTTTTACAATTTATTCAAATTGGACTTGTCCTTCATGTGTCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTTTTACAATTTATTCAAATTGGACTTGTCCTTCATGTGTCAG  1036

seq1  TTAAAGAGTATTCTTTCTTGTATAATTTTCTTTTCAACATATTCTATTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGTATTCTTTCTTGTATAATTTTCTTTTCAACATATTCTATTTT  1086

seq1  GTACTCTTTTTCTCATCTCATTTGTAACTATGTAATAATAATTGAGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTTTTCTCATCTCATTTGTAACTATGTAATAATAATTGAGAATT  1136

seq1  C  1148
      |
seq2  C  1137

seq1: chr1_28544406_28545364
seq2: B6Ng01-134D21.g_218_1169

seq1  TTTCTGGGTGCACGCTGAATCGGGAATTGAGTTGGGGTTTCCCCACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTGCACGCTGAATCGGGAATTGAGTTGGGGTTTCCCCACTAGG  50

seq1  TTCTATCAGTGGAGGACACTAGAAGAACAAGACCTGTTTTATCTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGTGGAGGACACTAGAAGAACAAGACCTGTTTTATCTATTAAA  100

seq1  CAGAGCTCTTATGGGCTCACAGAGCCCAAAATTATAAGCACAGGAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTTATGGGCTCACAGAGCCCAAAATTATAAGCACAGGAACTAC  150

seq1  AAGGCCCTGTACCATGTCCTCTTTGTATACTTTGTCACTAACATGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTGTACCATGTCCTCTTTGTATACTTTGTCACTAACATGCTTGG  200

seq1  TGGTTTTGTGGAACTCTCAAGAGTGGGATCAAGTGTGTCTCTGACACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTGGAACTCTCAAGAGTGGGATCAAGTGTGTCTCTGACACCTT  250

seq1  TGCTTGCTCTTGGGACTCTTTCTTCTACTGGATTGGTTTTTCTTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCTTGGGACTCTTTCTTCTACTGGATTGGTTTTTCTTTTTCAG  300

seq1  CCTTGACATGAGAGCATTTCTTTTTCTTACTGTATCTTCTTTTGCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACATGAGAGCATTTCTTTTTCTTACTGTATCTTCTTTTGCTGTGC  350

seq1  TTGGTTGTTGTCTCTTGGAGGCTTCCTTTTTCCTGAAGGAAAACAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTGTCTCTTGGAGGCTTCCTTTTTCCTGAAGGAAAACAGAGAG  400

seq1  GGAATGAAGGGAAGAAGAAAGGTGAAGATATTGGGAGGATTGGAGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGGGAAGAAGAAAGGTGAAGATATTGGGAGGATTGGAGAAAGT  450

seq1  GGAAACTGTCCACGGTGTATTGTATGAGAAAAGAATCTATTTTCAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGTCCACGGTGTATTGTATGAGAAAAGAATCTATTTTCAATATG  500

seq1  AATGAATTAATAGATTATAAGAATCTGTGTATCTGGTCAGCTGTGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTAATAGATTATAAGAATCTGTGTATCTGGTCAGCTGTGGCTGT  550

seq1  GGAAGCAGCCCTTATAAGCTCGAGAGAGCAGCACCACTGAAGCTAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCCCTTATAAGCTCGAGAGAGCAGCACCACTGAAGCTAAGCAA  600

seq1  CTTGTGCTCATTCTGAGAATCTAGCAATTATGAAGGTGCCACCAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCATTCTGAGAATCTAGCAATTATGAAGGTGCCACCAAAGAAA  650

seq1  GAAGCCCTTCCAAACACAGCTGGGCTGATTTGCATGAATCAGAGGTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTTCCAAACACAGCTGGGCTGATTTGCATGAATCAGAGGTCATG  700

seq1  GCAGCATACACACAGAGTCCCAGGGCTGAGAGTAGAGGTGGACTCAAGAC  750
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GCAGCATACACACAGAGTCCCAGGGCTGAGAGTAGA-GTGGACTC-AGAC  748

seq1  CCTACTGCTAACCCAGAGGCTACCTCTGACCAATAACCCACATGCAAATG  800
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  CCTACTGCTAACCCAGA-GCTA-CTCTGACCAATAACCCACATGCAAATG  796

seq1  AAAACTTAGTATTCACTAAAAGAGTCACTGGATATGCAAACCACTCTTAG  850
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAACTTAGTATTCACTAAAAGAGTCACTGGATATGCAAACCACTC-TAG  844

seq1  GTCTCTGTGTCTCATGTGTCAGATCACAAACACAAAATGAACTTTATGTG  900
      ||||||||||||||||||||||||||||||||| |||||||||| ||  |
seq2  GTCTCTGTGTCTCATGTGTCAGATCACAAACAC-AAATGAACTTAATTGG  893

seq1  TTTCTTTGTTTATTTGACTTATAAATGCTTTCTCTGGGCTT---TTCTTT  947
      |||| ||||||||||||||  | ||||||||||||||||||   ||||||
seq2  TTTC-TTGTTTATTTGACT--TTAATGCTTTCTCTGGGCTTTCCTTCTTT  940

seq1  TCTTTTTTCTTT  959
      || |||||||||
seq2  TCGTTTTTCTTT  952