BAC Information

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BAC

Clone NameB6Ng01-135C07
Chromosome1 (Build37)
Map Location 142,265,750 - 142,404,454
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C07.bB6Ng01-135C07.g
ACCDH935258DH935259
length1,1981,145
definitionDH935258|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C07, 5' end.DH935259|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,403,245 - 142,404,454)(142,265,750 - 142,266,912)
sequence
gaattcttcactggaaacagaaacatactttttgtgggcatgaaaagaag
cataggtaaaactcttcccttcatattcagcaaaaaatgtactttcttcc
aaaacgatgtgatagacttcgtttcctgagcacctcccgtaagtcttctg
ccactgttcaggtgactgctgcccttctctgcaacacaagcacacacaca
tacaggcaaaggaaaacacaatgaatgggggctaatgatagtagtgacca
gccagccaatccacaaggccaaaaagcagtagacacaattcaaggaggta
gccttatggggctttgagctcagaaggatggtattacatagaagtcccaa
cactaaattaaattcagcatcatataaaatatggagctttgatgaatagt
gggttgcaagaaagtgggagttttacaaggcccaatgttagaagtattta
ctctgaccatggctttacaagctcacatttcatgtcctctctgtggaaat
accatagtcatgtccagttagacaaactttatgttaacttttgtccattt
tataaccaatgctcccctcaagctgtgtattctttaaaaattattcactc
tgtataaggggacaaggaatagatttgatatttataccatttcacaatgc
atgtgatgattttattcatatggtagcattttacacaaggcctttgggga
taattaagccttaagagtaaactatagaatatattagagtgacgtcatca
gttctgaagaactagccagatttttctactaataatatagcccagcgtca
gaaatcaacaactcagacattcctctccagcacctgacataccataacct
ggattgtagaattcaaatctactgaaatgtgaaaactaaagtttcttgtg
tatgaactacttattcttccatgtgaaacactgaaagtttattaagctgg
tatacaaaagagatgctaaaagttcttacagaaagaggcatgtacattaa
gaaaacatgtggtttccttagcttataatgttcttcctaatctgtggctt
tagaaattacttcccatgaaaatcataaatataatggtctatattctaat
ttctccattacctccttataatctgtttacatttcggattaaattattgg
attctagcagtaatcttccaattgaatggaggtgcatatatataatat
gaattcttttgacataaccagcacagtgttgagtaatttctttgcaatga
ttcagttacattcttgatacctattaatggcctgtgaacaagaatctaaa
atacggtcctttgtacaaaccaggattttgaaaaagtagaaattatattt
gaaaaaaatgttatttaattgcattacaaattttaactaactctcatatt
atttgatacccaaacatctaaaatatcactttaaatattcagttcccata
tatttctcatgtatatttgtatagattgttatttatatatttaatattta
aaaacaatttcagtgtgaaagaaatatttatacacccagcatcattctac
aataaatatgaaataatttaaaaaataaaacaaatgtttaaggtttcatg
gagataaggaacaaaattagcaaaattttaaagtgcatttggaaattagc
accagatgaattaaatacccatcgcatgaagagcctttttttcccttatt
tagcagtgtaggtctgtgttgatgcaatcctttcattagtgtttgtagct
gcttggcagtacaaaataaatgtccaacactaaagttcttattcttctgg
caccataaatacctgtctttataaaatgctttcaaaatggaaatctactt
aatacatacatattaagtacatcaagaggaaacaacagcaaacatcagca
tagtttccaaacctttaaaagaaaaattcttcacacttaaaagcttttgt
tctgtctatagccttttgttccatgattattctaacaagcactaactctg
agatgtatatcataataacttatttaataaactgataaagtatgttttag
atggtaacaggtatatctaaaaattttggattgattgccattcttgatat
ttatatattgctaatcatacatttaatgctataagctttactatagtatt
tgaaatctattctaagaacctaagaatctattctaagatcattttctctc
atttatatgttagtattattggttttatctttctagaataaaatatctac
taaacattcaagcttaagaaatattgagattgtggcagaaagcttagagc
taagatcagtacttggttggaggttggtgttctagtaattcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142403245_142404454
seq2: B6Ng01-135C07.b_47_1244 (reverse)

seq1  ATATATATATATATACACATTCCATTCAATTTGTGATGATTTTGCTGCTA  50
      |||| ||||||||| |||  |||||||||||   || ||  || ||||||
seq2  ATAT-TATATATATGCAC-CTCCATTCAATT--GGAAGA--TTACTGCTA  44

seq1  GAAT-CAATAATATTTAATCTGAAATTGTAAACAGA-TATAATGAAGTAA  98
      |||| |||||  |||||||| |||| |||||||||| ||||| || || |
seq2  GAATCCAATA--ATTTAATCCGAAA-TGTAAACAGATTATAAGGAGGT-A  90

seq1  ATGGAGAAATTAG-ATATAGA-CATTATA-TTATGATTTTCATGGGAAGT  145
      ||||||||||||| ||||||| ||||||| ||||||||||||||||||||
seq2  ATGGAGAAATTAGAATATAGACCATTATATTTATGATTTTCATGGGAAGT  140

seq1  AAATTTCTAAAGCCACAAGATTAGGAAGAACATTATAAAGCTAAGGAAAC  195
       ||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  -AATTTCTAAAGCCAC-AGATTAGGAAGAACATTAT-AAGCTAAGGAAAC  187

seq1  CACATGTTTTCTTAATGTACATGCCTTCTTTCTGTAAGAACTTTTAGCAT  245
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACATGTTTTCTTAATGTACATGCC-TCTTTCTGTAAGAACTTTTAGCAT  236

seq1  CTCTTTTGTATACCAGCTTAATAAACTTTCAGTTGTTTTCACATGGAAGA  295
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CTCTTTTGTATACCAGCTTAATAAACTTTCAGT--GTTTCACATGGAAGA  284

seq1  ATAAGTAGTTCATACACAAGAAAACTTTAGTTTTCACATTTCAGTAGATT  345
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAGTAGTTCATACACAAG-AAACTTTAGTTTTCACATTTCAGTAGATT  333

seq1  TGAATTCTACAATCCAGGTTATGGTATGTCAGGTGCTGGAGAGGAATGTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTACAATCCAGGTTATGGTATGTCAGGTGCTGGAGAGGAATGTC  383

seq1  TGAGTTGTTGATTTCTGACGCTGGGCTATATTATTAGTAGAAAAATCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTTGATTTCTGACGCTGGGCTATATTATTAGTAGAAAAATCTGG  433

seq1  CTAGTTCTTCAGAACTGATGACGTCACTCTAATATATTCTATAGTTTACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTCAGAACTGATGACGTCACTCTAATATATTCTATAGTTTACT  483

seq1  CTTAAGGCTTAATTATCCCCAAAGGCCTTGTGTAAAATGCTACCATATGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGCTTAATTATCCCCAAAGGCCTTGTGTAAAATGCTACCATATGA  533

seq1  ATAAAATCATCACATGCATTGTGAAATGGTATAAATATCAAATCTATTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCATCACATGCATTGTGAAATGGTATAAATATCAAATCTATTCC  583

seq1  TTGTCCCCTTATACAGAGTGAATAATTTTTAAAGAATACACAGCTTGAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCTTATACAGAGTGAATAATTTTTAAAGAATACACAGCTTGAGG  633

seq1  GGAGCATTGGTTATAAAATGGACAAAAGTTAACATAAAGTTTGTCTAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTGGTTATAAAATGGACAAAAGTTAACATAAAGTTTGTCTAACT  683

seq1  GGACATGACTATGGTATTTCCACAGAGAGGACATGAAATGTGAGCTTGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGACTATGGTATTTCCACAGAGAGGACATGAAATGTGAGCTTGTA  733

seq1  AAGCCATGGTCAGAGTAAATACTTCTAACATTGGGCCTTGTAAAACTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGTCAGAGTAAATACTTCTAACATTGGGCCTTGTAAAACTCCC  783

seq1  ACTTTCTTGCAACCCACTATTCATCAAAGCTCCATATTTTATATGATGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGCAACCCACTATTCATCAAAGCTCCATATTTTATATGATGCT  833

seq1  GAATTTAATTTAGTGTTGGGACTTCTATGTAATACCATCCTTCTGAGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATTTAGTGTTGGGACTTCTATGTAATACCATCCTTCTGAGCTC  883

seq1  AAAGCCCCATAAGGCTACCTCCTTGAATTGTGTCTACTGCTTTTTGGCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCATAAGGCTACCTCCTTGAATTGTGTCTACTGCTTTTTGGCCT  933

seq1  TGTGGATTGGCTGGCTGGTCACTACTATCATTAGCCCCCATTCATTGTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTGGCTGGCTGGTCACTACTATCATTAGCCCCCATTCATTGTGT  983

seq1  TTTCCTTTGCCTGTATGTGTGTGTGCTTGTGTTGCAGAGAAGGGCAGCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCCTGTATGTGTGTGTGCTTGTGTTGCAGAGAAGGGCAGCAG  1033

seq1  TCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGT  1083

seq1  CTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGA  1133

seq1  AGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAAGTATGTTTCTGTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAAGTATGTTTCTGTT  1183

seq1  TCCAGTGAAGAATTC  1210
      |||||||||||||||
seq2  TCCAGTGAAGAATTC  1198

seq1: chr1_142265750_142266912
seq2: B6Ng01-135C07.g_70_1214

seq1  GAATTCTTTTGACATAACCAGCACAGTGTTGAGTAATTTCTTTGCAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGACATAACCAGCACAGTGTTGAGTAATTTCTTTGCAATGA  50

seq1  TTCAGTTACATTCTTGATACCTATTAATGGCCTGTGAACAAGAATCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTACATTCTTGATACCTATTAATGGCCTGTGAACAAGAATCTAAA  100

seq1  ATACGGTCCTTTGTACAAACCAGGATTTTGAAAAAGTAGAAATTATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTCCTTTGTACAAACCAGGATTTTGAAAAAGTAGAAATTATATTT  150

seq1  GAAAAAAATGTTATTTAATTGCATTACAAATTTTAACTAACTCTCATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGTTATTTAATTGCATTACAAATTTTAACTAACTCTCATATT  200

seq1  ATTTGATACCCAAACATCTAAAATATCACTTTAAATATTCAGTTCCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATACCCAAACATCTAAAATATCACTTTAAATATTCAGTTCCCATA  250

seq1  TATTTCTCATGTATATTTGTATAGATTGTTATTTATATATTTAATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATGTATATTTGTATAGATTGTTATTTATATATTTAATATTTA  300

seq1  AAAACAATTTCAGTGTGAAAGAAATATTTATACACCCAGCATCATTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTCAGTGTGAAAGAAATATTTATACACCCAGCATCATTCTAC  350

seq1  AATAAATATGAAATAATTTAAAAAATAAAACAAATGTTTAAGGTTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATGAAATAATTTAAAAAATAAAACAAATGTTTAAGGTTTCATG  400

seq1  GAGATAAGGAACAAAATTAGCAAAATTTTAAAGTGCATTTGGAAATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGAACAAAATTAGCAAAATTTTAAAGTGCATTTGGAAATTAGC  450

seq1  ACCAGATGAATTAAATACCCATCGCATGAAGAGCCTTTTTTTCCCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGAATTAAATACCCATCGCATGAAGAGCCTTTTTTTCCCTTATT  500

seq1  TAGCAGTGTAGGTCTGTGTTGATGCAATCCTTTCATTAGTGTTTGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGTAGGTCTGTGTTGATGCAATCCTTTCATTAGTGTTTGTAGCT  550

seq1  GCTTGGCAGTACAAAATAAATGTCCAACACTAAAGTTCTTATTCTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAGTACAAAATAAATGTCCAACACTAAAGTTCTTATTCTTCTGG  600

seq1  CACCATAAATACCTGTCTTTATAAAATGCTTTCAAAATGGAAATCTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAATACCTGTCTTTATAAAATGCTTTCAAAATGGAAATCTACTT  650

seq1  AATACATACATATTAAGTACATCAAGAGGAAACAACAGCAAACATCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACATATTAAGTACATCAAGAGGAAACAACAGCAAACATCAGCA  700

seq1  TAGTTTCCAAACCTTTAAAAGAAAAATTCTTCACACTTAAAAGCTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCAAACCTTTAAAAGAAAAATTCTTCACACTTAAAAGCTTTTGT  750

seq1  TCTGTCTATAGCCTTTTGTTCCATGATTATTCTAACAAGCACTAACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATAGCCTTTTGTTCCATGATTATTCTAACAAGCACTAACTCTG  800

seq1  AGATGTATATCATAATAACTTATTTAATAAACTGATAAAGTATGTTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATATCATAATAACTTATTTAATAAACTGATAAAGTATGTTTTAG  850

seq1  ATGGTAACAGGTATATCTAAAAATTTTGGATTGATTGCCATTCTTGATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAGGTATATCTAAAAATTTTGGATTGATTGCCATTCTTGATAT  900

seq1  TTATATATTGCTAATCATACATTTAATGCTATAAGCTTTACTATAGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTGCTAATCATACATTTAATGCTATAAGCTTTACTATAGTATT  950

seq1  TGAAATCTATTCTAAGAACCTAAGAATCTATTCTAAGATCATTTTCTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTATTCTAAGAACCTAAGAATCTATTCTAAGATCATTTTCTCTC  1000

seq1  ATTATATATGTTAAGTATTATTGGTTTTAATCTTCTAAGAATAAAATATC  1050
      ||| |||||||| ||||||||||||||| |||||   |||||||||||||
seq2  ATT-TATATGTT-AGTATTATTGGTTTT-ATCTTTCTAGAATAAAATATC  1047

seq1  TAACTCACACATTCAAGGCTCAAGAAATATTGCAGAATTGGTGGCAGAAA  1100
      | ||| | |||||||| ||| ||||||||||| |||  | ||||||||||
seq2  T-ACT-AAACATTCAA-GCTTAAGAAATATTG-AGA--TTGTGGCAGAAA  1091

seq1  GCTTTTAAGAGCTAAAAGATCAGGTACTTGGTTGTGAGGTTGTGTGTCCT  1150
      ||||   ||||||  ||||||| ||||||||||| ||||||| |||| ||
seq2  GCTT---AGAGCT--AAGATCA-GTACTTGGTTG-GAGGTTG-GTGTTCT  1133

seq1  AGTAATATCAGCA  1163
      |||||| ||||||
seq2  AGTAAT-TCAGCA  1145