BAC Information

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BAC

Clone NameB6Ng01-135E08
Chromosome1 (Build37)
Map Location 89,062,557 - 89,239,576
singlet/doubletdoublet
Overlap gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1
Downstream geneLOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E08.bB6Ng01-135E08.g
ACCDH935354DH935355
length1,1161,108
definitionDH935354|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E08, 5' end.DH935355|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,238,460 - 89,239,576)(89,062,557 - 89,063,666)
sequence
gaattcactagaccaggctagccttgaattcaagagatccatctgcctct
tctacctccttagtgttctcttggtatgatatacatggcactctctacca
cagtcttctaaaaacctacaaaccccatcaaatcataaagaaaaaaccag
accgactctaatgaagttctacagaaacacctgaccagtattaaactcat
caaggatgttaaaacaaaggaagcagtcagagccaaagggtaaggataaa
aactaaatgtcatatggtgtcctgcacatatctgccaacaaaaagtacca
ggtaaaactaaacaaacagggaaagaacaagtgacacattttaacaacaa
ggtgccacttttggcttactaactataataatgtgtcacagaaacaatgt
catcaacagtgggaaaaatttctatagtatcctctcaattttctatggct
ctacaactgttcttaaaactaaagcctatgagggtaggggggctggcgag
atggctcactgggtaagagcacttgactgctcttctaaaggtcctaagtt
caaatcccagcaaccacatggtggctcacaaccatccttaatgagatctg
acgccctcttctggtgtgtctgaagacagctatagtgtacttacatataa
taataaataaatcttaaaaaaaaaaaacctaaagcctatcataaaaaaag
aaactaagactataactacaaattttaacttttttgcatttaactttttt
tttttaatttggtggtatttttttcggtagtgcttgggatggaatccaat
tttgtgcatgccagattctactactgaactacatattttgtaacatttaa
aataaagtgtgattaacacattccctccaaaagtcttcgcactcaagaca
agacaccagagattgcttcttaatttcaggtcagccagacgaccaaatgt
tccagaccagcctgaactactaattttctattaagtgataataaaagttc
cttcaatcacactggcccgagtgcattaacttatttatgcatagctactg
cacaggtcaacagtgctgacagaacagcccatcacagcaataatcctggt
tacaatgctgggagat
gaattcatcgtcatctctactatgggcatcgaaatcacatcattgctatc
ccatcaccagtgctggcaatgccaccatcaccatcaggacccacgtggta
cccagcactatctgatctcatcgaatcctcagagtaagacctccgtggtc
taatttctcaggtgaataaaccaagctttgcaacctaggagcttacttaa
agccaccaaggcaggacttgagtctgaactgcttgacccgggagtttgaa
gtcataattgctacatagaaccactgtcagtccagaggcctgggccatgg
caaagagaaaggaaaagagagggtaggatcagtgcattaggaagcagcag
agatggaggtgtgcctggtacttagttcagtttccttagcagacagtctc
ttgtcactctaataagtgcttaacagccttgctcccagccctcccctggc
tgtacttcgccagagctacatgggaggaataggtccaagaaagccagtga
gactcaagctaagggagtggagtcggctcagtggttaagagcacttgttg
ctcttccagagaactggggttcaatccttagcatttacatagtggctccc
aaccatccaacatcctcttccaatcctcgcaggtgctgggcaagcacatg
gctcacctgcattcagacaaaacattcatgcacataacattcagacacat
aaaatgctgggatttacaagcatgcactgctctgcctgtttttgtttttt
gttttgaacatgggttctagagaaaaggattccttttcagttgatttgac
aactgaatcatttcctcagtcctgaatttccagtcttgtctccagtactg
tggaggccagacagccccaagtcccacattcttgtgagccatgaccagct
ctaggagcacaaaccactagtggtggccatactgaggattgacaccatgt
ctagttgggatgtcgtaactacggggtggccctgagatcctcagtttggg
aggctggagttatatgggtcagggatctggcatggtcaggttctggtgaa
ggaaccattcctgtgttgtggaatgtagcttcctggctccctccccccct
ggaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89238460_89239576
seq2: B6Ng01-135E08.b_49_1164 (reverse)

seq1  ATCT-CCAGCATTGTTAAACAGGATTTATGCTGTGATGGGCTGTTCTGTC  49
      |||| ||||||||| ||| |||||||  ||||||||||||||||||||||
seq2  ATCTCCCAGCATTG-TAACCAGGATTATTGCTGTGATGGGCTGTTCTGTC  49

seq1  AGGCACTGTTGACCTGTGCAGTAGCTATGCATAAATATGTTTAATGCACT  99
      | ||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  A-GCACTGTTGACCTGTGCAGTAGCTATGCATAAATAAG-TTAATGCACT  97

seq1  CGGGCCAGTGTGATTG-AGGAACTTTTATTTATTCACTTAATAG-AAATT  147
      |||||||||||||||| |||||||||||||   ||||||||||| |||||
seq2  CGGGCCAGTGTGATTGAAGGAACTTTTATT--ATCACTTAATAGAAAATT  145

seq1  AGTAGTTCAGGCTGGTCTGGAACATTGTGTCGTCTGGGCTGACCTGAAAT  197
      ||||||||||||||||||||||||||  ||||||| ||||||||||||||
seq2  AGTAGTTCAGGCTGGTCTGGAACATTTGGTCGTCT-GGCTGACCTGAAAT  194

seq1  TTAG-AGCAATCTTCTTGTGTC-TGTCTTGAGTGCGAAGACTTTTGGAGG  245
      | || ||||||| ||| ||||| |||||||||||||||||||||||||||
seq2  TAAGAAGCAATC-TCTGGTGTCTTGTCTTGAGTGCGAAGACTTTTGGAGG  243

seq1  GAATGTGTTAATCACACTTTATTTTTAAATGTTACAAAATATGTAGTTCA  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAATGTGTTAATCACACTTTA-TTTTAAATGTTACAAAATATGTAGTTCA  292

seq1  GTAGTAGAATCTGGCATGCACAAAATTGGATTCCATCCCAAGCACTACCG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGAATCTGGCATGCACAAAATTGGATTCCATCCCAAGCACTACCG  342

seq1  -AAAAAATACCACCAAATT-AAAAAAAAAAGTTAAATGCAAAAAAGTTAA  393
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAAAATACCACCAAATTAAAAAAAAAAAGTTAAATGCAAAAAAGTTAA  392

seq1  AATTTGTAGTTATAGTCTTAGTTTCTTTTTTTATGATAGGCTTTAGGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAGTTATAGTCTTAGTTTCTTTTTTTATGATAGGCTTTAGGTTT  442

seq1  TTTTTTTTTAAGATTTATTTATTATTATATGTAAGTACACTATAGCTGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGATTTATTTATTATTATATGTAAGTACACTATAGCTGTC  492

seq1  TTCAGACACACCAGAAGAGGGCGTCAGATCTCATTAAGGATGGTTGTGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAAGAGGGCGTCAGATCTCATTAAGGATGGTTGTGAG  542

seq1  CCACCATGTGGTTGCTGGGATTTGAACTTAGGACCTTTAGAAGAGCAGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTTAGGACCTTTAGAAGAGCAGTC  592

seq1  AAGTGCTCTTACCCAGTGAGCCATCTCGCCAGCCCCCCTACCCTCATAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCTTACCCAGTGAGCCATCTCGCCAGCCCCCCTACCCTCATAGG  642

seq1  CTTTAGTTTTAAGAACAGTTGTAGAGCCATAGAAAATTGAGAGGATACTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTAAGAACAGTTGTAGAGCCATAGAAAATTGAGAGGATACTA  692

seq1  TAGAAATTTTTCCCACTGTTGATGACATTGTTTCTGTGACACATTATTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTTTCCCACTGTTGATGACATTGTTTCTGTGACACATTATTAT  742

seq1  AGTTAGTAAGCCAAAAGTGGCACCTTGTTGTTAAAATGTGTCACTTGTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAAGCCAAAAGTGGCACCTTGTTGTTAAAATGTGTCACTTGTTC  792

seq1  TTTCCCTGTTTGTTTAGTTTTACCTGGTACTTTTTGTTGGCAGATATGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTTTGTTTAGTTTTACCTGGTACTTTTTGTTGGCAGATATGTG  842

seq1  CAGGACACCATATGACATTTAGTTTTTATCCTTACCCTTTGGCTCTGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACCATATGACATTTAGTTTTTATCCTTACCCTTTGGCTCTGACT  892

seq1  GCTTCCTTTGTTTTAACATCCTTGATGAGTTTAATACTGGTCAGGTGTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTTGTTTTAACATCCTTGATGAGTTTAATACTGGTCAGGTGTTT  942

seq1  CTGTAGAACTTCATTAGAGTCGGTCTGGTTTTTTCTTTATGATTTGATGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAACTTCATTAGAGTCGGTCTGGTTTTTTCTTTATGATTTGATGG  992

seq1  GGTTTGTAGGTTTTTAGAAGACTGTGGTAGAGAGTGCCATGTATATCATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGGTTTTTAGAAGACTGTGGTAGAGAGTGCCATGTATATCATA  1042

seq1  CCAAGAGAACACTAAGGAGGTAGAAGAGGCAGATGGATCTCTTGAATTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAACACTAAGGAGGTAGAAGAGGCAGATGGATCTCTTGAATTCA  1092

seq1  AGGCTAGCCTGGTCTAGTGAATTC  1117
      ||||||||||||||||||||||||
seq2  AGGCTAGCCTGGTCTAGTGAATTC  1116

seq1: chr1_89062557_89063666
seq2: B6Ng01-135E08.g_70_1177

seq1  GAATTCATCGTCATCTCTACTATGGGCATCGAAATCACATCATTGCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGTCATCTCTACTATGGGCATCGAAATCACATCATTGCTATC  50

seq1  CCATCACCAGTGCTGGCAATGCCACCATCACCATCAGGACCCACGTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCAGTGCTGGCAATGCCACCATCACCATCAGGACCCACGTGGTA  100

seq1  CCCAGCACTATCTGATCTCATCGAATCCTCAGAGTAAGACCTCCGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTATCTGATCTCATCGAATCCTCAGAGTAAGACCTCCGTGGTC  150

seq1  TAATTTCTCAGGTGAATAAACCAAGCTTTGCAACCTAGGAGCTTACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCAGGTGAATAAACCAAGCTTTGCAACCTAGGAGCTTACTTAA  200

seq1  AGCCACCAAGGCAGGACTTGAGTCTGAACTGCTTGACCCGGGAGTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAAGGCAGGACTTGAGTCTGAACTGCTTGACCCGGGAGTTTGAA  250

seq1  GTCATAATTGCTACATAGAACCACTGTCAGTCCAGAGGCCTGGGCCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTGCTACATAGAACCACTGTCAGTCCAGAGGCCTGGGCCATGG  300

seq1  CAAAGAGAAAGGAAAAGAGAGGGTAGGATCAGTGCATTAGGAAGCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAAGGAAAAGAGAGGGTAGGATCAGTGCATTAGGAAGCAGCAG  350

seq1  AGATGGAGGTGTGCCTGGTACTTAGTTCAGTTTCCTTAGCAGACAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGTGCCTGGTACTTAGTTCAGTTTCCTTAGCAGACAGTCTC  400

seq1  TTGTCACTCTAATAAGTGCTTAACAGCCTTGCTCCCAGCCCTCCCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTCTAATAAGTGCTTAACAGCCTTGCTCCCAGCCCTCCCCTGGC  450

seq1  TGTACTTCGCCAGAGCTACATGGGAGGAATAGGTCCAAGAAAGCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCGCCAGAGCTACATGGGAGGAATAGGTCCAAGAAAGCCAGTGA  500

seq1  GACTCAAGCTAAGGGAGTGGAGTCGGCTCAGTGGTTAAGAGCACTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGCTAAGGGAGTGGAGTCGGCTCAGTGGTTAAGAGCACTTGTTG  550

seq1  CTCTTCCAGAGAACTGGGGTTCAATCCTTAGCATTTACATAGTGGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGAACTGGGGTTCAATCCTTAGCATTTACATAGTGGCTCCC  600

seq1  AACCATCCAACATCCTCTTCCAATCCTCGCAGGTGCTGGGCAAGCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCAACATCCTCTTCCAATCCTCGCAGGTGCTGGGCAAGCACATG  650

seq1  GCTCACCTGCATTCAGACAAAACATTCATGCACATAACATTCAGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTGCATTCAGACAAAACATTCATGCACATAACATTCAGACACAT  700

seq1  AAAATGCTGGGATTTACAAGCATGCACTGCTCTGCCTGTTTTTGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGGGATTTACAAGCATGCACTGCTCTGCCTGTTTTTGTTTTTT  750

seq1  GTTTTGAACATGGGTTCTAGAGAAAAGGATTCCTTTTCAGTTGATTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACATGGGTTCTAGAGAAAAGGATTCCTTTTCAGTTGATTTGAC  800

seq1  AACTGAATCATTTCCTCAGTCCTGAA-TTCCAGTCTTGTCTCCAGTACTG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTGAATCATTTCCTCAGTCCTGAATTTCCAGTCTTGTCTCCAGTACTG  850

seq1  TGGAGGCCAGACAGCCCCAAGTCCCACA-TCTTGTGAGCCATGACCAGCT  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGAGGCCAGACAGCCCCAAGTCCCACATTCTTGTGAGCCATGACCAGCT  900

seq1  CTAGGAGGCACCAATCACTAGTGGTGGCCATACTGAGGATGAACACCATG  948
      |||||| |||| || |||||||||||||||||||||||||  ||||||||
seq2  CTAGGA-GCACAAACCACTAGTGGTGGCCATACTGAGGATTGACACCATG  949

seq1  TCTAGTTGGGATTGTCGTAACTAACGGGGTGGGCCTGAGATTCTCAAGTT  998
      ||||||||||| |||||||||| ||||||||| |||||||| ||| ||||
seq2  TCTAGTTGGGA-TGTCGTAACT-ACGGGGTGGCCCTGAGATCCTC-AGTT  996

seq1  TGGGAGGCTGGAAGTATATATGGGTCAGGGATCTGGCATGGTCAGGTTCT  1048
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCTGG-AGT-TATATGGGTCAGGGATCTGGCATGGTCAGGTTCT  1044

seq1  GGTG-AGGACCCATTCCTGT-TTGTGGATGGCAGTCTTCCT-GCTCCATC  1095
      |||| |||| |||||||||| |||||||  | || |||||| ||||| ||
seq2  GGTGAAGGAACCATTCCTGTGTTGTGGAATGTAG-CTTCCTGGCTCCCTC  1093

seq1  CCCACATGGAAGAGA  1110
      ||| | |||||||||
seq2  CCCCCCTGGAAGAGA  1108