BAC Information

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BAC

Clone NameB6Ng01-135E19
Chromosome1 (Build37)
Map Location 148,855,523 - 148,978,714
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E19.bB6Ng01-135E19.g
ACCDH935374DH935375
length1,0381,141
definitionDH935374|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E19, 5' end.DH935375|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,855,523 - 148,856,577)(148,977,559 - 148,978,714)
sequence
gaattccttgatccacttagacttgagctttatacaaggagataagaatg
gatcaattcacattcttctacatgctatccatcagttgaaccagcaccat
ttgttgaatagctgttttgctggtggtgcatgcctttaatcccatcactt
gggaggcagaggcaagcgaatttctcagtttgaggccagcctgctctaca
gagtgagttccaggacagccaaggctatacagagaaacccagtcttgaaa
aaccaaaaaaaaaaaaagctgtttttccaatggatggtttctcctataaa
ttctgtggcttaatatagtctaaggagtttgttttcttcctgagtggatc
aaatgttttttattaggcaaaaagtcatatattcacacagtggtggtatt
gaattttaagtgaagtagctgattccacttttgtctctttaataaatatg
atcaataatatctcttgcagaatagcgaacttatttataatttcagtgtt
aggattgccattataagccttaaaaatgacctacaaaatgtaactttagt
gtatattcataaatgtcttctgtggtttgagtcaggttctttcctgttta
gctgttctgttgcatgttctaggctaattcctgtctgcacctgtcatctt
gctgtaggtgtaggagtgttgggattacaaatgcattgcccacatctgga
acatatatatatatatatatatatatatatatatatatatatatatatat
atatgttctgcagaggaactcaggcaattaaaactgctcagctataactt
ttagcatcttagctatctctgagctttatctatatttaaattcacttatt
cataaaaattaattataatatattatttgaaatctactctttcagcagaa
tgaaattgggagaagagattgctgaaatgaaagagatagatacatttata
caccatactaaaataaaagatgtatttctttagcaactaagaagtttgtg
tctctgaagttcctaggttgtttgttgtttgttacatt
gaattcagagtcatatcttatagaattacctagtggtccatggaactaaa
taccagaatattgacctttgtgcttgcagaccattattacttggctggtt
tggcatggaactaacagagcacagcagctagtaaaataaagtgctcagga
ccccagccacctgacaaaagttaagctaaatcaaatatcatgctaggaaa
cattaaatcgtctccattaacttagcactgagtaattaagaatatgaata
tttttaatataaaaagccccaggatccattttataaaagttgtttaaata
caacactcaacataaaagaagatgatcctgaagcagacatgcagagcata
ctaataaaccataaaatataaccataacataatgattagggacataaact
tatcttttagtattataaaaatagcatagtctgccatgttgtctctagtt
attttcaccatttaaaaataacccagcattatattgagctgcagctcctt
aagaaagatgcctataggaaaatatagtcacttaattcagagagaataaa
atcatgatatcaaacaatgtaacaaatctcttgcagaatgaatataaaaa
gatgaaaatgcattaatttctgaaattatatttataatccttgggttaaa
tgcattatgtgtgagaattgaagactaactctgctgaaagaattacaatt
aataagaaaatacatactgcatgtctctgctgcttgtattttctctatca
ttattgtgttttccactgtctttacagaacaatgttttgtcttatttctt
cctattttaattttttaaatcttctcagaggtgctgtagctgggttatta
caacttccgttggcagcttgtaatcacacgtttgatcactgaggtcttga
tgctgtcagttcttattagctcctaaaatggtttcttcacacatctcggg
tttgtattactcacagaaagaaacattcaaagcatactatggcttttctg
cacacggaacagcttcgcacaaataagtcacctctgaaattcttaaactt
atgtaatacacattaaacaaattttgtgaaatgtatgatctagaaaaatt
cttctatagtaatgcagtcgaacttgaataactagcacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148855523_148856577
seq2: B6Ng01-135E19.b_45_1082

seq1  GAATTCCTTGATCCACTTAGACTTGAGCTTTATACAAGGAGATAAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATCCACTTAGACTTGAGCTTTATACAAGGAGATAAGAATG  50

seq1  GATCAATTCACATTCTTCTACATGCTATCCATCAGTTGAACCAGCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTCACATTCTTCTACATGCTATCCATCAGTTGAACCAGCACCAT  100

seq1  TTGTTGAATAGCTGTTTTGCTGGTGGTGCATGCCTTTAATCCCATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATAGCTGTTTTGCTGGTGGTGCATGCCTTTAATCCCATCACTT  150

seq1  GGGAGGCAGAGGCAAGCGAATTTCTCAGTTTGAGGCCAGCCTGCTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAAGCGAATTTCTCAGTTTGAGGCCAGCCTGCTCTACA  200

seq1  GAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCAGTCTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCAGTCTTGAAA  250

seq1  AACCAAAAAAAAAAAAAGCTGTTTTTCCAATGGATGGTTTCTCCTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAAAAAAAAGCTGTTTTTCCAATGGATGGTTTCTCCTATAAA  300

seq1  TTCTGTGGCTTAATATAGTCTAAGGAGTTTGTTTTCTTCCTGAGTGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCTTAATATAGTCTAAGGAGTTTGTTTTCTTCCTGAGTGGATC  350

seq1  AAATGTTTTTTATTAGGCAAAAAGTCATATATTCACACAGTGGTGGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTTATTAGGCAAAAAGTCATATATTCACACAGTGGTGGTATT  400

seq1  GAATTTTAAGTGAAGTAGCTGATTCCACTTTTGTCTCTTTAATAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGTGAAGTAGCTGATTCCACTTTTGTCTCTTTAATAAATATG  450

seq1  ATCAATAATATCTCTTGCAGAATAGCGAACTTATTTATAATTTCAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAATATCTCTTGCAGAATAGCGAACTTATTTATAATTTCAGTGTT  500

seq1  AGGATTGCCATTATAAGCCTTAAAAATGACCTACAAAATGTAACTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCATTATAAGCCTTAAAAATGACCTACAAAATGTAACTTTAGT  550

seq1  GTATATTCATAAATGTCTTCTGTGGTTTGAGTCAGGTTCTTTCCTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCATAAATGTCTTCTGTGGTTTGAGTCAGGTTCTTTCCTGTTTA  600

seq1  GCTGTTCTGTTGCATGTTCTAGGCTAATTCCTGTCTGCACCTGTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTGTTGCATGTTCTAGGCTAATTCCTGTCTGCACCTGTCATCTT  650

seq1  GCTGTAGGTGTAGGAGTGTTGGGATTACAAATGCATTGCCCACATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGTGTAGGAGTGTTGGGATTACAAATGCATTGCCCACATCTGGA  700

seq1  ACATATATATATATATATATATATATATATATATATATATATATATATAT  750
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC--ATATATATATATATATATATATATATATATATATATATATATATAT  748

seq1  ATATATGTTCTGCAGAGGAACTCAGGCAATTAAAACTGCTCAGCTATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTCTGCAGAGGAACTCAGGCAATTAAAACTGCTCAGCTATAAC  798

seq1  TTTTAGCATCTTAGCTATCTCTGAGCTTTATCTATATTTAAAATCACTTA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTAGCATCTTAGCTATCTCTGAGCTTTATCTATATTTAAATTCACTTA  848

seq1  TTCATAAAAATTAATTATAATATATTATTTGAAATCTACTCTTTCAGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAATTAATTATAATATATTATTTGAAATCTACTCTTTCAGCAG  898

seq1  AATGGAAATTGGGAGAAGGAGATATGCTGAAAATGAAAAGAGATAAGATT  950
      ||| ||||||||||||| ||||| ||||| ||||| |||||||| ||| |
seq2  AAT-GAAATTGGGAGAA-GAGAT-TGCTG-AAATG-AAAGAGAT-AGA-T  941

seq1  ACATTTATACAACATTACTAAAAATAAAAAGATTGTATTTCTTTTGCAAC  1000
      ||||||||||| || ||||||||   |||||| ||||||||||| |||||
seq2  ACATTTATACACCA-TACTAAAA--TAAAAGA-TGTATTTCTTTAGCAAC  987

seq1  AGAAGAGGTTTGGTGTCTCTGATGTTCCTAGTTTGTTTGTTTGTTTGTTT  1050
        |||| |||| |||||||||| |||||||| ||||||| ||||||| ||
seq2  -TAAGAAGTTT-GTGTCTCTGAAGTTCCTAGGTTGTTTG-TTGTTTG-TT  1033

seq1  ACATT  1055
      |||||
seq2  ACATT  1038

seq1: chr1_148977559_148978714
seq2: B6Ng01-135E19.g_67_1207 (reverse)

seq1  TTTGTGCTAGTTTATTCAAGTTTCTGACTGGCATTTAATTGATAAGAAGA  50
      |||||||||| |||||||||||   |||| |||||  | | || ||||||
seq2  TTTGTGCTAG-TTATTCAAGTT--CGACT-GCATT--ACT-AT-AGAAGA  42

seq1  TATTTTCTAGATTCATACATTTCAC-AAATATGTTT-ATGTGTATTACAT  98
        ||||||||| ||||||||||||| |||| ||||| |||||||||||||
seq2  ATTTTTCTAGA-TCATACATTTCACAAAATTTGTTTAATGTGTATTACAT  91

seq1  AAGTGTAAAGATTTTCAGA-GTGACTTTATGTGTGCGAAGCTGTTCTGTG  147
      |||| | |||| ||||||| ||||| |||| ||||||||||||||| |||
seq2  AAGT-TTAAGAATTTCAGAGGTGAC-TTATTTGTGCGAAGCTGTTCCGTG  139

seq1  TTGCAGAAAAGCCATTAGGTTATGGCTTTGAATTGTATCTTTCTGTGGAG  197
       ||||||||||||| |||  ||| |||||||| ||| ||||||||| |||
seq2  -TGCAGAAAAGCCA-TAG--TAT-GCTTTGAA-TGTTTCTTTCTGT-GAG  182

seq1  TAATACAAA-CCGAGATGTGTGAAGAAACCATTTTTAGGAGCTAATAAGA  246
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TAATACAAACCCGAGATGTGTGAAGAAACCA-TTTTAGGAGCTAATAAGA  231

seq1  ACTGACAGCATCAAGACCTCAGTGATCAAACGTGTGATTACAAGCTGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCATCAAGACCTCAGTGATCAAACGTGTGATTACAAGCTGCCA  281

seq1  ACGGAAGTTGTAATAACCCAGCTACAGCACCTCTGAGAAGATTTAAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGTTGTAATAACCCAGCTACAGCACCTCTGAGAAGATTTAAAAAA  331

seq1  TTAAAATAGGAAGAAATAAGACAAAACATTGTTCTGTAAAGACAGTGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGGAAGAAATAAGACAAAACATTGTTCTGTAAAGACAGTGGAA  381

seq1  AACACAATAATGATAGAGAAAATACAAGCAGCAGAGACATGCAGTATGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATAATGATAGAGAAAATACAAGCAGCAGAGACATGCAGTATGTA  431

seq1  TTTTCTTATTAATTGTAATTCTTTCAGCAGAGTTAGTCTTCAATTCTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTAATTGTAATTCTTTCAGCAGAGTTAGTCTTCAATTCTCAC  481

seq1  ACATAATGCATTTAACCCAAGGATTATAAATATAATTTCAGAAATTAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGCATTTAACCCAAGGATTATAAATATAATTTCAGAAATTAATG  531

seq1  CATTTTCATCTTTTTATATTCATTCTGCAAGAGATTTGTTACATTGTTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATCTTTTTATATTCATTCTGCAAGAGATTTGTTACATTGTTTG  581

seq1  ATATCATGATTTTATTCTCTCTGAATTAAGTGACTATATTTTCCTATAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGATTTTATTCTCTCTGAATTAAGTGACTATATTTTCCTATAGG  631

seq1  CATCTTTCTTAAGGAGCTGCAGCTCAATATAATGCTGGGTTATTTTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTTAAGGAGCTGCAGCTCAATATAATGCTGGGTTATTTTTAAA  681

seq1  TGGTGAAAATAACTAGAGACAACATGGCAGACTATGCTATTTTTATAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAATAACTAGAGACAACATGGCAGACTATGCTATTTTTATAATA  731

seq1  CTAAAAGATAAGTTTATGTCCCTAATCATTATGTTATGGTTATATTTTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATAAGTTTATGTCCCTAATCATTATGTTATGGTTATATTTTAT  781

seq1  GGTTTATTAGTATGCTCTGCATGTCTGCTTCAGGATCATCTTCTTTTATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTAGTATGCTCTGCATGTCTGCTTCAGGATCATCTTCTTTTATG  831

seq1  TTGAGTGTTGTATTTAAACAACTTTTATAAAATGGATCCTGGGGCTTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTTGTATTTAAACAACTTTTATAAAATGGATCCTGGGGCTTTTT  881

seq1  ATATTAAAAATATTCATATTCTTAATTACTCAGTGCTAAGTTAATGGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAATATTCATATTCTTAATTACTCAGTGCTAAGTTAATGGAGA  931

seq1  CGATTTAATGTTTCCTAGCATGATATTTGATTTAGCTTAACTTTTGTCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTAATGTTTCCTAGCATGATATTTGATTTAGCTTAACTTTTGTCAG  981

seq1  GTGGCTGGGGTCCTGAGCACTTTATTTTACTAGCTGCTGTGCTCTGTTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGGGTCCTGAGCACTTTATTTTACTAGCTGCTGTGCTCTGTTAG  1031

seq1  TTCCATGCCAAACCAGCCAAGTAATAATGGTCTGCAAGCACAAAGGTCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCCAAACCAGCCAAGTAATAATGGTCTGCAAGCACAAAGGTCAA  1081

seq1  TATTCTGGTATTTAGTTCCATGGACCACTAGGTAATTCTATAAGATATGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGTATTTAGTTCCATGGACCACTAGGTAATTCTATAAGATATGA  1131

seq1  CTCTGAATTC  1156
      ||||||||||
seq2  CTCTGAATTC  1141