BAC Information

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BAC

Clone NameB6Ng01-135I05
Chromosome14 (Build37)1 (Build37)
Map Location 121,384,084 - 121,384,158192,554,035 - 192,555,085
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837, Ranbp5
Downstream geneFarp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I05.bB6Ng01-135I05.g
ACCDH935529DH935530
length1231,042
definitionDH935529|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I05, 5' end.DH935530|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,384,084 - 121,384,158)(192,554,035 - 192,555,085)
sequence
tacatctttttctgaaggcaaacagaaaaagactggcttccaggcagcta
ggaggaggatcttaaagcccacacccacagtcacacacttcctctaagaa
ggccacacctactccaacaaggc
gaattctcctggaagtgcttgcaccagccctggcccagcaacacgaggtg
cagtcagaaggagaagacacagagaagacagcaaccaagagcccaggtgt
cacagagggccttcaaaattaatcttagaaccaagtgctgactgaaccaa
gctgctgcttcttcaaagacaacaggcctaaccccactaggctgtcatta
gtttgctgactgatgctgctagtcttaccccatgcttgcagaggttggac
atctaagatccaggattctcctcactctaaggtcctgccctccttgtagc
ttagatgcttatatgccccagccataaggaaatgacggccgaagagatgg
aaagagttttcctagtatccattcttcacaacggtgaaagccagaagaaa
tcctctggtttgtttaacaagcaaaaatccacgacagacacgtaaacttc
ttccaagagtggtcactaagcacagttcatctgtttgacttttcacattt
gattgttcttcagctccttccaaaccatattcatgttcccaaaggaaaag
accatcacacacacacacacacacacacacactataattgtattattgca
tgtgaggttttacacattctaggcaggcagccatactgaacttaattcct
gagccccaggactgaggctcttccatcacagggcaggtccactcaaaccc
aaggccccaaaatactaaatgaaggagtataagagtcatcagatagagct
gactacctcatggggaattctcagagcgaaaacaatactccatatgatat
tgcagtaccaggagatgacttccattagctcagacctacagaatttacaa
cgccaagagccagccccaatgtagacaattcccctggaggactgaaatgc
atctatagttctcctgaaataagtttaccaccctggaaggagactgctta
cacggagacgcatgtacacaggggagcccatatgggaactcttccttctt
ccagtgaacctaaactgcccttgagacagataagaaagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_121384084_121384158
seq2: B6Ng01-135I05.b_80_174 (reverse)

seq1  GCCTTGTTGGAGTAGGTGTG----TCATA----------------GTGGG  30
      ||||||||||||||||||||    || ||                |||||
seq2  GCCTTGTTGGAGTAGGTGTGGCCTTCTTAGAGGAAGTGTGTGACTGTGGG  50

seq1  TGTGGGCTTTAAGACCCTCATCCTAGTTGCCTGGAAGTCAGTCTT  75
      |||||||||||||| |||| |||||| |||||||||| |||||||
seq2  TGTGGGCTTTAAGATCCTCCTCCTAGCTGCCTGGAAGCCAGTCTT  95

seq1: chr1_192554035_192555085
seq2: B6Ng01-135I05.g_69_1110

seq1  GAATTCTCCTGGAAGTGCTTGCACCAGCCCTGGCCCAGCAACACGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGAAGTGCTTGCACCAGCCCTGGCCCAGCAACACGAGGTG  50

seq1  CAGTCAGAAGGAGAAGACACAGAGAAGACAGCAACCAAGAGCCCAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAAGGAGAAGACACAGAGAAGACAGCAACCAAGAGCCCAGGTGT  100

seq1  CACAGAGGGCCTTCAAAATTAATCTTAGAACCAAGTGCTGACTGAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGCCTTCAAAATTAATCTTAGAACCAAGTGCTGACTGAACCAA  150

seq1  GCTGCTGCTTCTTCAAAGACAACAGGCCTAACCCCACTAGGCTGTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTTCTTCAAAGACAACAGGCCTAACCCCACTAGGCTGTCATTA  200

seq1  GTTTGCTGACTGATGCTGCTAGTCTTACCCCATGCTTGCAGAGGTTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGACTGATGCTGCTAGTCTTACCCCATGCTTGCAGAGGTTGGAC  250

seq1  ATCTAAGATCCAGGATTCTCCTCACTCTAAGGTCCTGCCCTCCTTGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGATCCAGGATTCTCCTCACTCTAAGGTCCTGCCCTCCTTGTAGC  300

seq1  TTAGATGCTTATATGCCCCAGCCATAAGGAAATGACGGCCGAAGAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCTTATATGCCCCAGCCATAAGGAAATGACGGCCGAAGAGATGG  350

seq1  AAAGAGTTTTCCTAGTATCCATTCTTCACAACGGTGAAAGCCAGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTTCCTAGTATCCATTCTTCACAACGGTGAAAGCCAGAAGAAA  400

seq1  TCCTCTGGTTTGTTTAACAAGCAAAAATCCACGACAGACACGTAAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTTTGTTTAACAAGCAAAAATCCACGACAGACACGTAAACTTC  450

seq1  TTCCAAGAGTGGTCACTAAGCACAGTTCATCTGTTTGACTTTTCACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAGTGGTCACTAAGCACAGTTCATCTGTTTGACTTTTCACATTT  500

seq1  GATTGTTCTTCAGCTCCTTCCAAACCATATTCATGTTCCCAAAGGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCTTCAGCTCCTTCCAAACCATATTCATGTTCCCAAAGGAAAAG  550

seq1  ACCATCACACACACACACACACACACACACACTATAATTGTATTATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACACACACACACACACACACACACACTATAATTGTATTATTGCA  600

seq1  TGTGAGGTTTTACACATTCTAGGCAGGCAGCCATACTGAACTTAATTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTTTTACACATTCTAGGCAGGCAGCCATACTGAACTTAATTCCT  650

seq1  GAGCCCCAGGACTGAGGCTCTTCCATCACAGGGCAGGTCCACTCAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAGGACTGAGGCTCTTCCATCACAGGGCAGGTCCACTCAAACCC  700

seq1  AAGGCCCCAAAATACTAAATGAAGGAGTATAAGAGTCATCAGATAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCCAAAATACTAAATGAAGGAGTATAAGAGTCATCAGATAGAGCT  750

seq1  GACTACCTCATGGGGAATTCTCAGAGCGAAAACAATACTCCATATGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCTCATGGGGAATTCTCAGAGCGAAAACAATACTCCATATGATAT  800

seq1  TGCAGTACCAGGAGATGACTTCCATTAGCTCAGACCTACAGAATTTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACCAGGAGATGACTTCCATTAGCTCAGACCTACAGAATTTACAA  850

seq1  CGCCAAGAGCCAGCCCCAATGTAGACAATTCCCCTGGAGGACTGAAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGAGCCAGCCCCAATGTAGACAATTCCCCTGGAGGACTGAAATGC  900

seq1  ATCTATAGTTCTCCTGAAATAAGTTTACCACCCTGGAAGGAGACTGCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGTTCTCCTGAAATAAGTTTACCACCCTGGAAGGAGACTGCTTA  950

seq1  CACGGAGACGCAATGTACAACAGGGGGAGCCCATATGGGAAACTCCTTCC  1000
      ||||||||||| |||||| ||| |||||||||||||||| |||| |||||
seq2  CACGGAGACGC-ATGTAC-ACA-GGGGAGCCCATATGGG-AACT-CTTCC  995

seq1  TTTCTCTCAGTGAACCTAAAACTGCCCTTGAGACAAGATAAGACAAGACA  1050
       ||||  |||||||||| |||||||||||||||| |||||||| ||||||
seq2  -TTCTTCCAGTGAACCT-AAACTGCCCTTGAGAC-AGATAAGA-AAGACA  1041

seq1  A  1051
      |
seq2  A  1042