BAC Information

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BAC

Clone NameB6Ng01-135O12
Chromosome1 (Build37)
Map Location 19,555,507 - 19,556,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135O12.bB6Ng01-135O12.g
ACCDH935828DH935829
length1,1791,174
definitionDH935828|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O12, 5' end.DH935829|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatatgcccagcttacgtctgttttctgcccttctcatgtctccc
ataggttcaggatatgcatcagtcacgagctgctttctttgtagaagtga
aagtggaattatgaaatatctgcatttaataaactggtatccataaagtt
gcccaattattctaataatcttataatcagacttgtataaattaaatatt
ctgtataaattctttggcttcaaatagacacttttatgtaagaccccatc
catcatatatgaataaaaatttggattaatttaatgaaattggtggcaaa
atatttttttcttcttcttaccatcaatgggatactattaatgtacaaag
acaggaccttgtcatctgtaacagggctaccaaaaactgccaccagctgt
ctgatggtgcctggcattcacagaggcccacgaagctggggagaagagag
caagagataggcagttgcaagccctggagaggcatgccagagtcaaggga
tttgcatagtaaaattgaaagcatatttgcattcaggaatcaaatgcatg
cattaccactgtcctggaaattggctgactcagaccatacgactaagtaa
agaataatgtttactcagaactgatgtacttgtttaaaaagttaatgttt
taagctttctgccttctagcaaaacatctctaatctaattagagtgttcc
aaccccacttggcctgcaagcgggcctgcagtgcatggagcgctcaccag
acaggatggaccccaggccctttctcttcaacccctcagtttaaaaagtt
cagctgtaccctcattctcctcagcaagtgttttcttctcatttcttagc
cagccaccaggcacattctagcactttacgctcttgagaatcccagaaag
caactttatttgggtgataggtccttccctctaagacattcttagagcac
catgcagcagatatctattgcaaagcacagagggtttagcagccacagag
ggagggcattcatatcatacgctgcttcagaaagcctcttaggctcacac
tcagaacttcagcatttagcttttcaacatcccttgactcttttgtttaa
ccggcctacccccttattaagaactgtaagtggacacggcttaagggttg
gatatggagtgtgcaatgggggtggaatt
gaattcaaggatttctcttaaagagaaggtggaaagtttgtaagagccaa
cgagtcatggatgactccgaagaaatggtatcttccagatacaacaggac
taatgtacatatgatctgtggcaactcatacatggcccgcactggtcgaa
gctctgggaaggggaggtggacaagggctctcactcttaaccaagaaact
atctgcagctgatacctacttgtaaaggaaaaatcagtttctccagtgga
gttgcatggaatatattagctttatttcagggaaggccctgggtccagga
gtatttaactgacataaaatgaagtcgatggtatttttagagataaattt
tgccccattttccattgtttgggcattgtttgtctttctggtcttgtgca
ttttttctatgtttcttgttttgtttttgtttattttcagagagataaag
aaaacaataaagttgagtgggtagggaggtggaaagggtctcaggggaat
tggaggaagcaaaaacatgattcaaatagattgtatgaatgatttttttc
tattaaaaaagaaatatataacaaaacaaaaaagaacacaatcagtctga
gcaattcaaaggagaaaagatgaggaggtatcccagcatttaactgcaaa
acttgttgtaaagttgtaataatgaagaatatggtgaatctctaaattgc
acactatattcaaacagaaaagaaaagctaaagattaatccccatacata
tagccagatgatatatagcatagatatgagcagtttaataaaaaaaaaac
caaaccaccaacaacaatgttttcagtaaatgatgctggaaaactggata
tacataaggagaataagaaacctaaaggcctacttgtcaccatcaacaaa
actaatctaattatattaaggcctaaattcttgaaatatgacattattgg
aataaaacatggggacatttaggaatcttgtatatacattctacagagta
caaaagagagaaaatgtaaatagaccaagatatttaattatttttaaaag
agtttgtgcagttggaagaaaaactagcgaatgagagtattttgctagtc
cggagaaattctttaactatccatccaaccagatttatagatttcagact
aacagactattatattaagtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19555507_19556698
seq2: B6Ng01-135O12.b_48_1226

seq1  GAATTCATATGCCCAGCTTACGTCTGTTTTCTGCCCTTCTCATGTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCCCAGCTTACGTCTGTTTTCTGCCCTTCTCATGTCTCCC  50

seq1  ATAGGTTCAGGATATGCATCAGTCACGAGCTGCTTTCTTTGTAGAAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCAGGATATGCATCAGTCACGAGCTGCTTTCTTTGTAGAAGTGA  100

seq1  AAGTGGAATTATGAAATATCTGCATTTAATAAACTGGTATCCATAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATTATGAAATATCTGCATTTAATAAACTGGTATCCATAAAGTT  150

seq1  GCCCAATTATTCTAATAATCTTATAATCAGACTTGTATAAATTAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATTATTCTAATAATCTTATAATCAGACTTGTATAAATTAAATATT  200

seq1  CTGTATAAATTCTTTGGCTTCAAATAGACACTTTTATGTAAGACCCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAATTCTTTGGCTTCAAATAGACACTTTTATGTAAGACCCCATC  250

seq1  CATCATATATGAATAAAAATTTGGATTAATTTAATGAAATTGGTGGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATATGAATAAAAATTTGGATTAATTTAATGAAATTGGTGGCAAA  300

seq1  ATATTTTTTTCTTCTTCTTACCATCAATGGGATACTATTAATGTACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTCTTCTTCTTACCATCAATGGGATACTATTAATGTACAAAG  350

seq1  ACAGGACCTTGTCATCTGTAACAGGGCTACCAAAAACTGCCACCAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCTTGTCATCTGTAACAGGGCTACCAAAAACTGCCACCAGCTGT  400

seq1  CTGATGGTGCCTGGCATTCACAGAGGCCCACGAAGCTGGGGAGAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTGCCTGGCATTCACAGAGGCCCACGAAGCTGGGGAGAAGAGAG  450

seq1  CAAGAGATAGGCAGTTGCAAGCCCTGGAGAGGCATGCCAGAGTCAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATAGGCAGTTGCAAGCCCTGGAGAGGCATGCCAGAGTCAAGGGA  500

seq1  TTTGCATAGTAAAATTGAAAGCATATTTGCATTCAGGAATCAAATGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAGTAAAATTGAAAGCATATTTGCATTCAGGAATCAAATGCATG  550

seq1  CATTACCACTGTCCTGGAAATTGGCTGACTCAGACCATACGACTAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACTGTCCTGGAAATTGGCTGACTCAGACCATACGACTAAGTAA  600

seq1  AGAATAATGTTTACTCAGAACTGATGTACTTGTTTAAAAAGTTAATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGTTTACTCAGAACTGATGTACTTGTTTAAAAAGTTAATGTTT  650

seq1  TAAGCTTTCTGCCTTCTAGCAAAACATCTCTAATCTAATTAGAGTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCTGCCTTCTAGCAAAACATCTCTAATCTAATTAGAGTGTTCC  700

seq1  AACCCCACTTGGCCTGCAAGCGGGCCTGCAGTGCATGGAGCGCTCACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTTGGCCTGCAAGCGGGCCTGCAGTGCATGGAGCGCTCACCAG  750

seq1  ACAGGATGGACCCCAGGCCCTTTCTCTTCAACCCCTCAGTTTAAAAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGGACCCCAGGCCCTTTCTCTTCAACCCCTCAGTTTAAAAAGTT  800

seq1  CAGCTGTACCCTCATTCTCCTCAGCAAGTGTTTTCTTCTCATTTCTTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTACCCTCATTCTCCTCAGCAAGTGTTTTCTTCTCATTTCTTAGC  850

seq1  CAGCCACCAGGCACATTCTAGCACTTTACGCTCTTGAGAATCCCAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAGGCACATTCTAGCACTTTACGCTCTTGAGAATCCCAGAAAG  900

seq1  CAACTTTATTTGGGTGATAGGTCCTTCCCTCTAAGACATTCTTAGAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTATTTGGGTGATAGGTCCTTCCCTCTAAGACATTCTTAGAGCAC  950

seq1  CATGCAGCAGATATCTAATTGCAAAAGCACAGAGGGTTTAGCAGCCACAG  1000
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CATGCAGCAGATATCT-ATTGC-AAAGCACAGAGGGTTTAGCAGCCACAG  998

seq1  AGGGAGGGCATTCATATCATTACGGCTGCTTCCAGAAAGCCTCTTTAAGG  1050
      ||||||||||||||||||| ||| ||||||| |||||||||||||  |||
seq2  AGGGAGGGCATTCATATCA-TAC-GCTGCTT-CAGAAAGCCTCTT--AGG  1043

seq1  CTCACAACTCAG-ACTTCAGCAATTTAGCTTTTTCAAACATTCCCTTGAC  1099
      ||||| |||||| |||||||| |||||||||||   |||| |||||||||
seq2  CTCAC-ACTCAGAACTTCAGC-ATTTAGCTTTT--CAACA-TCCCTTGAC  1088

seq1  TCTCCTGTTAAAACCGGCTA-CCTCTTATTAGAGACTGGTAGGTGGACAG  1148
      |||  |||| || | | ||| || ||||||| |||   ||| ||||||| 
seq2  TCTTTTGTTTAACCGGCCTACCCCCTTATTA-AGAACTGTAAGTGGACAC  1137

seq1  CGCTAAAGGTTATGGATAATGGAGT-TGTAGATGGGGGTGGGATT  1192
       ||| |||| | ||||| ||||||| || | |||||||||| |||
seq2  GGCTTAAGGGT-TGGAT-ATGGAGTGTGCA-ATGGGGGTGGAATT  1179