BAC Information

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BAC

Clone NameB6Ng01-136A23
Chromosome1 (Build37)
Map Location 144,925,292 - 145,042,069
singlet/doubletdoublet
Overlap geneLOC545369
Upstream geneLOC639376
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A23.bB6Ng01-136A23.g
ACCDH935942DH935943
length1,1671,160
definitionDH935942|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A23, 5' end.DH935943|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,040,898 - 145,042,069)(144,925,292 - 144,926,453)
sequence
gaattcacttcaggtgggagtatgtgctcttttacagaaccttttactgc
aaagagtttcaaagtcatctcctctaccaccacctcttcctgtgccaggt
tgccattgccatctttctcaatgtcaactcctgtactcttcttgctgctg
gttcaacagcaaatgcaccacccctctggtgttgcctcttgcatgttctc
ataccacatctatcaatgctgctgccttcctcctggccctgccagctgcc
ttcacaacactgccagaaacgttggcattgagtttgttgctcttctttct
caaagagagggaaaagctttccttctttctctaacttcaatagaaggaca
gaaattaaataaaagccccatgctaacaatactgctctcagacattaccc
acagctgaattcttcttcctgttttggacaaatctctcgtttccattcag
tctcggtttcccatcattctgcttttctcatcatcttggggaaactgagg
tattagtactggaagtgaggatttagaaaaggaacttaatagtcatagag
aactttatagaaatttgatgaatagaactgcacttgatgtgaaagctgcc
agaagtagttcagggtatctgggacagcctttgctcatgcaaagccattg
ctttgtataggagtgggagacagatgataaaggtgaagtctctgcctagg
gtgaagttgatctagatattaacaacagtggaaacataaaagaaggctat
gtagagctacagttgagtctgaatttgaagcattttgggctttatgtgtt
aaaaaagagcaaaaacatccaggagcagataattcataaagaggccagca
tgaagatgtagcgtcacctgaattgacaggaaagactaagcatggtaaaa
ctattactttagggaggacagaatgagaaaagctgcatagggcatacagt
aggaggatgtagaagaggaggaggacatgctggtagagtcagaacgatga
tggaggatgtacaggaggctacagaaagaatgaaaggagatttcagtaga
tagggctgctctcacattttacaatcatagtagtggagaatcttgaatgg
accaccagactgatcatcaaatgtacagttgccttgagtagaagcatttt
tactaaaatatgctgac
gaattctctcggggggcagggggagtgccctaggagagatgaaggtgggc
aaggaaggggacagcatttgaaatggaaagaaagaaagagagagagagag
agagagagagagagagagagagaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaaaacaaagacttttttaaaga
aaaatatcacgtgaagacatagacacattaggacacatgaaaattttaga
aactgagtgatgaatgcagatacagggcaaggaacaccaatagtgtcagc
caccatcagaactacgaagggacaaggataaagtcccagtaaagctccgg
ggacagcatggccctcttagcatgtattattttgtacttcagcctccaga
acaatgagaaaagcaaatctgctgtttcaagctgcacagtgtatagaacc
acaacaacaacaacaaaaagtacagtcagaagctgggttcaaaaccctac
atgtgcaggagggggtggagaaagaggagtgactacacacatttgatcag
cttctctgagattcctggtcatgagcagcctctgaactgacttaagcaaa
gggatccctttaatactagttaaatgaagaacagcacatcagatgcatca
gggcttggtggattttacatttaaaaatcatacccttctggttctgtggc
ttactaaaactttgttacacatgcaaggttaacaggataattaaagtcat
tcccagaagatttaggtcagaaaaataattaaccctgaatcacctagata
ataagaagggaaggtattttttctcttgacctgtatataaaaaaaatgct
tcaattttccatgacttttgatgcataggcatagtttatttaaaatctaa
aaaaccaataaataaataaaggtccatataaaatatgcacttgcagtcat
gcctatttttctttggaatatatccaataatcattcaggatggtctgagt
ttcccttaatttaatttcctagtatcccttgccacttttcatctgcaaca
attcattctcttatttttttaaagctagtaaccatacataaagacctgaa
gaccttcaagttcctggagccacttagatgctttagtgtacttgtttttc
tgagaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_145040898_145042069
seq2: B6Ng01-136A23.b_49_1215 (reverse)

seq1  GTCAGCATTATTTTAGTAAAAATGC-TCTCATCAAGCAAACTGTAACATT  49
      ||||||| ||||||||||||||||| |||  |||||  |||||| |||||
seq2  GTCAGCA-TATTTTAGTAAAAATGCTTCTACTCAAGGCAACTGT-ACATT  48

seq1  TGAATGATCATGTCTGGTTGT-CATTCAAGA-TCT-CACTACTATTGATT  96
      || ||||||| ||||||| || ||||||||| ||| |||||||| |||||
seq2  TG-ATGATCA-GTCTGGTGGTCCATTCAAGATTCTCCACTACTA-TGATT  95

seq1  TGTAAATGTGAGAGCAGCCCTATCTTACTGAAATTCTCCTTTCATTCTTT  146
         ||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTAAAATGTGAGAGCAGCCCTATC-TACTGAAA-TCTCCTTTCATTCTTT  143

seq1  CTGTAGCCTCCTGTACATCCTCCATTCATCGTTCTGACTCTACCAGCATG  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGTAGCCTCCTGTACATCCTCCA-TCATCGTTCTGACTCTACCAGCATG  192

seq1  TCCTCCTCCTCCTTCTACATCCTCCTACTGTATGCCCTATGCAGCTTTTC  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCT-CTTCTACATCCTCCTACTGTATGCCCTATGCAGCTTTTC  241

seq1  TCATTCTGTCCTCCCTAAAGTAATAGTTTTACCATGCTTAGTCTTTCCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTCCTCCCTAAAGTAATAGTTTTACCATGCTTAGTCTTTCCTG  291

seq1  TCAATTCAGGTGACGCTACATCTTCATGCTGGCCTCTTTATGAATTATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAGGTGACGCTACATCTTCATGCTGGCCTCTTTATGAATTATCT  341

seq1  GCTCCTGGATGTTTTTGCTCTTTTTTAACACATAAAGCCCAAAATGCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGATGTTTTTGCTCTTTTTTAACACATAAAGCCCAAAATGCTTC  391

seq1  AAATTCAGACTCAACTGTAGCTCTACATAGCCTTCTTTTATGTTTCCACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGACTCAACTGTAGCTCTACATAGCCTTCTTTTATGTTTCCACT  441

seq1  GTTGTTAATATCTAGATCAACTTCACCCTAGGCAGAGACTTCACCTTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATATCTAGATCAACTTCACCCTAGGCAGAGACTTCACCTTTAT  491

seq1  CATCTGTCTCCCACTCCTATACAAAGCAATGGCTTTGCATGAGCAAAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCTCCCACTCCTATACAAAGCAATGGCTTTGCATGAGCAAAGGC  541

seq1  TGTCCCAGATACCCTGAACTACTTCTGGCAGCTTTCACATCAAGTGCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGATACCCTGAACTACTTCTGGCAGCTTTCACATCAAGTGCAGT  591

seq1  TCTATTCATCAAATTTCTATAAAGTTCTCTATGACTATTAAGTTCCTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATCAAATTTCTATAAAGTTCTCTATGACTATTAAGTTCCTTTT  641

seq1  CTAAATCCTCACTTCCAGTACTAATACCTCAGTTTCCCCAAGATGATGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCTCACTTCCAGTACTAATACCTCAGTTTCCCCAAGATGATGAG  691

seq1  AAAAGCAGAATGATGGGAAACCGAGACTGAATGGAAACGAGAGATTTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAATGATGGGAAACCGAGACTGAATGGAAACGAGAGATTTGTC  741

seq1  CAAAACAGGAAGAAGAATTCAGCTGTGGGTAATGTCTGAGAGCAGTATTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGGAAGAAGAATTCAGCTGTGGGTAATGTCTGAGAGCAGTATTG  791

seq1  TTAGCATGGGGCTTTTATTTAATTTCTGTCCTTCTATTGAAGTTAGAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGGGGCTTTTATTTAATTTCTGTCCTTCTATTGAAGTTAGAGAA  841

seq1  AGAAGGAAAGCTTTTCCCTCTCTTTGAGAAAGAAGAGCAACAAACTCAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAGCTTTTCCCTCTCTTTGAGAAAGAAGAGCAACAAACTCAAT  891

seq1  GCCAACGTTTCTGGCAGTGTTGTGAAGGCAGCTGGCAGGGCCAGGAGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGTTTCTGGCAGTGTTGTGAAGGCAGCTGGCAGGGCCAGGAGGAA  941

seq1  GGCAGCAGCATTGATAGATGTGGTATGAGAACATGCAAGAGGCAACACCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCATTGATAGATGTGGTATGAGAACATGCAAGAGGCAACACCA  991

seq1  GAGGGGTGGTGCATTTGCTGTTGAACCAGCAGCAAGAAGAGTACAGGAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGTGCATTTGCTGTTGAACCAGCAGCAAGAAGAGTACAGGAGT  1041

seq1  TGACATTGAGAAAGATGGCAATGGCAACCTGGCACAGGAAGAGGTGGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGAGAAAGATGGCAATGGCAACCTGGCACAGGAAGAGGTGGTGG  1091

seq1  TAGAGGAGATGACTTTGAAACTCTTTGCAGTAAAAGGTTCTGTAAAAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGATGACTTTGAAACTCTTTGCAGTAAAAGGTTCTGTAAAAGAG  1141

seq1  CACATACTCCCACCTGAAGTGAATTC  1172
      ||||||||||||||||||||||||||
seq2  CACATACTCCCACCTGAAGTGAATTC  1167

seq1: chr1_144925292_144926453
seq2: B6Ng01-136A23.g_61_1220

seq1  GAATTCTCTCGGGGGGCAGGGGGAGTGCCCTAGGAGAGATGAAGGTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGGGGGCAGGGGGAGTGCCCTAGGAGAGATGAAGGTGGGC  50

seq1  AAGGAAGGGGACAGCATTTGAAATGGAAAGAAAGAAAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGGACAGCATTTGAAATGGAAAGAAAGAAAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAG----AAGAAAGAAAGAAAGAAAGAAAGA  146
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAAGAAAGAAAGAAAGAAAGAAAGAAAGA  150

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACAAAGACTTTTTTAAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACAAAGACTTTTTTAAAGA  200

seq1  AAAATATCACGTGAAGACATAGACACATTAGGACACATGAAAATTTTAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCACGTGAAGACATAGACACATTAGGACACATGAAAATTTTAGA  250

seq1  AACTGAGTGATGAATGCAGATACAGGGCAAGGAACACCAATAGTGTCAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTGATGAATGCAGATACAGGGCAAGGAACACCAATAGTGTCAGC  300

seq1  CACCATCAGAACTACGAAGGGACAAGGATAAAGTCCCAGTAAAGCTCCGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGAACTACGAAGGGACAAGGATAAAGTCCCAGTAAAGCTCCGG  350

seq1  GGACAGCATGGCCCTCTTAGCATGTATTATTTTGTACTTCAGCCTCCAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATGGCCCTCTTAGCATGTATTATTTTGTACTTCAGCCTCCAGA  400

seq1  ACAATGAGAAAAGCAAATCTGCTGTTTCAAGCTGCACAGTGTATAGAACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGAAAAGCAAATCTGCTGTTTCAAGCTGCACAGTGTATAGAACC  450

seq1  ACAACAACAACAACAAAAAGTACAGTCAGAAGCTGGGTTCAAAACCCTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAACAAAAAGTACAGTCAGAAGCTGGGTTCAAAACCCTAC  500

seq1  ATGTGCAGGAGGGGGTGGAGAAAGAGGAGTGACTACACACATTTGATCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGAGGGGGTGGAGAAAGAGGAGTGACTACACACATTTGATCAG  550

seq1  CTTCTCTGAGATTCCTGGTCATGAGCAGCCTCTGAACTGACTTAAGCAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAGATTCCTGGTCATGAGCAGCCTCTGAACTGACTTAAGCAAA  600

seq1  GGGATCCCTTTAATACTAGTTAAATGAAGAACAGCACATCAGATGCATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCTTTAATACTAGTTAAATGAAGAACAGCACATCAGATGCATCA  650

seq1  GGGCTTGGTGGATTTTACATTTAAAAATCATACCCTTCTGGTTCTGTGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGTGGATTTTACATTTAAAAATCATACCCTTCTGGTTCTGTGGC  700

seq1  TTACTAAAACTTTGTTACACATGCAAGGTTAACAGGATAATTAAAGTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAACTTTGTTACACATGCAAGGTTAACAGGATAATTAAAGTCAT  750

seq1  TCCCAGAAGATTTAGGTCAGAAAAATAATTAA-CCTGAATCACCTAGATA  795
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCAGAAGATTTAGGTCAGAAAAATAATTAACCCTGAATCACCTAGATA  800

seq1  ATAAGAAGGGAAGGTA-TTTTTCTCTTGACCTGTATAT-AAAAAAATGCT  843
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  ATAAGAAGGGAAGGTATTTTTTCTCTTGACCTGTATATAAAAAAAATGCT  850

seq1  TCAA-TTTCCATGACTTTTGATGCATAGGCATAGTTTTATTTAAAATCTA  892
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAATTTTCCATGACTTTTGATGCATAGGCATAG-TTTATTTAAAATCTA  899

seq1  AAAAACAAATAAATAAATAAAGGTCCATATAAAAATATGCACTTGCAGTC  942
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAACCAATAAATAAATAAAGGTCCATAT-AAAATATGCACTTGCAGTC  948

seq1  ATG-CTA-TTTTCTTTGG-ATATATCCAATAATCATTCA-GAT-GTCTGA  987
      ||| ||| |||||||||| |||||||||||||||||||| ||| ||||||
seq2  ATGCCTATTTTTCTTTGGAATATATCCAATAATCATTCAGGATGGTCTGA  998

seq1  GTTCACATTAA-TTAATTTCCTAGTTATCCTTG-CACTTTTCATCTGCAA  1035
      |||  | |||| |||||||||||||   ||||| |||||||||||||| |
seq2  GTTTCCCTTAATTTAATTTCCTAGTATCCCTTGCCACTTTTCATCTGC-A  1047

seq1  ACAATTCATTCTTCTTTATTTTTTAAGCTAGTTAACCATACATCAAAGAT  1085
      ||||||||||||  | | ||||| ||||||| ||||||||||| ||||| 
seq2  ACAATTCATTCTCTTATTTTTTTAAAGCTAG-TAACCATACAT-AAAGAC  1095

seq1  CTTGGAACAACCTCAAAGTTCTTGGAGCAACCTAGATGCTTTATGTTTGT  1135
      ||  |||  ||||  |||||| |||||| || |||||||||||    |||
seq2  CT--GAA-GACCTTCAAGTTCCTGGAGCCACTTAGATGCTTTA---GTGT  1139

seq1  ACTTTTTTTTTTTCATGAGAGAAAATG  1162
      |||| ||||| |      |||||||||
seq2  ACTTGTTTTTCT------GAGAAAATG  1160